Strain Fitness in Rahnella sp. WP5 around EX31_RS06515

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06510 and EX31_RS06515 overlap by 17 nucleotidesEX31_RS06515 and EX31_RS06520 overlap by 4 nucleotidesEX31_RS06520 and EX31_RS06525 are separated by 217 nucleotides EX31_RS06510: EX31_RS06510 - carboxypeptidase M32, at 75,191 to 76,672 _RS06510 EX31_RS06515: EX31_RS06515 - two-component system sensor histidine kinase RstB, at 76,656 to 77,999 _RS06515 EX31_RS06520: EX31_RS06520 - two-component system response regulator RstA, at 77,996 to 78,727 _RS06520 EX31_RS06525: EX31_RS06525 - hypothetical protein, at 78,945 to 79,364 _RS06525 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1at 75.868 kb on - strand, within EX31_RS06510at 75.931 kb on - strand, within EX31_RS06510at 75.947 kb on + strand, within EX31_RS06510at 75.947 kb on + strand, within EX31_RS06510at 75.947 kb on + strand, within EX31_RS06510at 75.948 kb on - strand, within EX31_RS06510at 75.948 kb on - strand, within EX31_RS06510at 75.948 kb on - strand, within EX31_RS06510at 75.948 kb on - strand, within EX31_RS06510at 75.948 kb on - strand, within EX31_RS06510at 75.948 kb on - strand, within EX31_RS06510at 75.948 kb on - strand, within EX31_RS06510at 76.024 kb on + strand, within EX31_RS06510at 76.025 kb on - strand, within EX31_RS06510at 76.200 kb on - strand, within EX31_RS06510at 76.200 kb on - strand, within EX31_RS06510at 76.200 kb on - strand, within EX31_RS06510at 76.453 kb on + strand, within EX31_RS06510at 76.453 kb on + strand, within EX31_RS06510at 76.453 kb on + strand, within EX31_RS06510at 76.454 kb on - strand, within EX31_RS06510at 76.454 kb on - strand, within EX31_RS06510at 76.604 kb on - strandat 76.610 kb on + strandat 76.611 kb on - strandat 76.968 kb on + strand, within EX31_RS06515at 77.093 kb on - strand, within EX31_RS06515at 77.174 kb on + strand, within EX31_RS06515at 77.206 kb on + strand, within EX31_RS06515at 77.206 kb on + strand, within EX31_RS06515at 77.206 kb on + strand, within EX31_RS06515at 77.206 kb on + strand, within EX31_RS06515at 77.206 kb on + strand, within EX31_RS06515at 77.206 kb on + strand, within EX31_RS06515at 77.207 kb on - strand, within EX31_RS06515at 77.207 kb on - strand, within EX31_RS06515at 77.207 kb on - strand, within EX31_RS06515at 77.207 kb on - strand, within EX31_RS06515at 77.207 kb on - strand, within EX31_RS06515at 77.207 kb on - strand, within EX31_RS06515at 77.316 kb on + strand, within EX31_RS06515at 77.316 kb on + strand, within EX31_RS06515at 77.316 kb on + strand, within EX31_RS06515at 77.328 kb on - strand, within EX31_RS06515at 77.382 kb on - strand, within EX31_RS06515at 77.453 kb on + strand, within EX31_RS06515at 77.453 kb on + strand, within EX31_RS06515at 77.453 kb on + strand, within EX31_RS06515at 77.453 kb on + strand, within EX31_RS06515at 77.610 kb on - strand, within EX31_RS06515at 77.611 kb on + strand, within EX31_RS06515at 77.611 kb on + strand, within EX31_RS06515at 77.612 kb on - strand, within EX31_RS06515at 77.612 kb on - strand, within EX31_RS06515at 77.612 kb on - strand, within EX31_RS06515at 77.612 kb on - strand, within EX31_RS06515at 77.612 kb on - strand, within EX31_RS06515at 77.612 kb on - strand, within EX31_RS06515at 77.612 kb on - strand, within EX31_RS06515at 77.647 kb on + strand, within EX31_RS06515at 77.648 kb on - strand, within EX31_RS06515at 77.680 kb on + strand, within EX31_RS06515at 77.680 kb on + strand, within EX31_RS06515at 77.799 kb on - strand, within EX31_RS06515at 77.858 kb on - strand, within EX31_RS06515at 77.920 kb on + strandat 78.006 kb on - strandat 78.036 kb on + strandat 78.044 kb on - strandat 78.044 kb on - strandat 78.088 kb on - strand, within EX31_RS06520at 78.088 kb on - strand, within EX31_RS06520at 78.088 kb on - strand, within EX31_RS06520at 78.088 kb on - strand, within EX31_RS06520at 78.089 kb on + strand, within EX31_RS06520at 78.089 kb on + strand, within EX31_RS06520at 78.090 kb on - strand, within EX31_RS06520at 78.090 kb on - strand, within EX31_RS06520at 78.090 kb on - strand, within EX31_RS06520at 78.090 kb on - strand, within EX31_RS06520at 78.144 kb on + strand, within EX31_RS06520at 78.144 kb on + strand, within EX31_RS06520at 78.144 kb on + strand, within EX31_RS06520at 78.144 kb on + strand, within EX31_RS06520at 78.145 kb on - strand, within EX31_RS06520at 78.145 kb on - strand, within EX31_RS06520at 78.145 kb on - strand, within EX31_RS06520at 78.187 kb on + strand, within EX31_RS06520at 78.358 kb on + strand, within EX31_RS06520at 78.358 kb on + strand, within EX31_RS06520at 78.381 kb on - strand, within EX31_RS06520at 78.381 kb on - strand, within EX31_RS06520at 78.435 kb on + strand, within EX31_RS06520at 78.435 kb on + strand, within EX31_RS06520at 78.435 kb on + strand, within EX31_RS06520at 78.436 kb on - strand, within EX31_RS06520at 78.436 kb on - strand, within EX31_RS06520at 78.436 kb on - strand, within EX31_RS06520at 78.528 kb on - strand, within EX31_RS06520at 78.539 kb on + strand, within EX31_RS06520at 78.539 kb on + strand, within EX31_RS06520at 78.540 kb on - strand, within EX31_RS06520at 78.540 kb on - strand, within EX31_RS06520at 78.540 kb on - strand, within EX31_RS06520at 78.540 kb on - strand, within EX31_RS06520at 78.540 kb on - strand, within EX31_RS06520at 78.572 kb on - strand, within EX31_RS06520at 78.708 kb on - strandat 78.742 kb on - strandat 78.757 kb on + strandat 78.758 kb on - strandat 78.758 kb on - strandat 78.763 kb on - strandat 78.794 kb on - strandat 78.799 kb on - strandat 78.801 kb on + strandat 78.802 kb on - strandat 78.802 kb on - strandat 78.854 kb on + strandat 78.862 kb on + strandat 78.863 kb on - strandat 78.870 kb on + strandat 78.870 kb on + strandat 78.870 kb on + strandat 78.870 kb on + strandat 78.870 kb on + strandat 78.871 kb on - strandat 78.871 kb on - strandat 78.871 kb on - strandat 78.871 kb on - strandat 78.871 kb on - strandat 78.871 kb on - strandat 78.871 kb on - strandat 78.872 kb on + strandat 78.872 kb on + strandat 78.872 kb on + strandat 78.872 kb on + strandat 78.872 kb on + strandat 78.872 kb on + strandat 78.873 kb on - strandat 78.873 kb on - strandat 78.873 kb on - strandat 78.873 kb on - strandat 78.873 kb on - strandat 78.873 kb on - strandat 78.873 kb on - strandat 78.874 kb on + strandat 78.874 kb on + strandat 78.874 kb on + strandat 78.874 kb on + strandat 78.874 kb on + strandat 78.874 kb on + strandat 78.882 kb on + strandat 78.882 kb on + strandat 78.894 kb on + strandat 78.895 kb on - strandat 78.895 kb on - strandat 78.896 kb on + strandat 78.896 kb on + strandat 78.896 kb on + strandat 78.896 kb on + strandat 78.896 kb on + strandat 78.896 kb on + strandat 78.896 kb on + strandat 78.896 kb on + strandat 78.897 kb on - strandat 78.897 kb on - strandat 78.905 kb on + strandat 78.905 kb on + strandat 78.906 kb on - strandat 78.909 kb on + strandat 78.999 kb on + strand, within EX31_RS06525at 78.999 kb on + strand, within EX31_RS06525at 78.999 kb on + strand, within EX31_RS06525at 78.999 kb on + strand, within EX31_RS06525

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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75,868 - EX31_RS06510 0.46 +0.4
75,931 - EX31_RS06510 0.50 -1.7
75,947 + EX31_RS06510 0.51 -0.3
75,947 + EX31_RS06510 0.51 -0.2
75,947 + EX31_RS06510 0.51 -1.1
75,948 - EX31_RS06510 0.51 -0.2
75,948 - EX31_RS06510 0.51 +0.7
75,948 - EX31_RS06510 0.51 +0.1
75,948 - EX31_RS06510 0.51 +0.0
75,948 - EX31_RS06510 0.51 +0.1
75,948 - EX31_RS06510 0.51 +0.5
75,948 - EX31_RS06510 0.51 -0.2
76,024 + EX31_RS06510 0.56 +0.9
76,025 - EX31_RS06510 0.56 +1.4
76,200 - EX31_RS06510 0.68 -1.3
76,200 - EX31_RS06510 0.68 +0.5
76,200 - EX31_RS06510 0.68 -0.8
76,453 + EX31_RS06510 0.85 -0.3
76,453 + EX31_RS06510 0.85 +0.0
76,453 + EX31_RS06510 0.85 -0.5
76,454 - EX31_RS06510 0.85 -0.1
76,454 - EX31_RS06510 0.85 +1.5
76,604 - +0.2
76,610 + -1.1
76,611 - -0.7
76,968 + EX31_RS06515 0.23 +0.8
77,093 - EX31_RS06515 0.33 -0.8
77,174 + EX31_RS06515 0.39 -0.9
77,206 + EX31_RS06515 0.41 -1.4
77,206 + EX31_RS06515 0.41 +0.3
77,206 + EX31_RS06515 0.41 -0.7
77,206 + EX31_RS06515 0.41 -0.6
77,206 + EX31_RS06515 0.41 -0.8
77,206 + EX31_RS06515 0.41 +0.1
77,207 - EX31_RS06515 0.41 +1.7
77,207 - EX31_RS06515 0.41 -0.7
77,207 - EX31_RS06515 0.41 -0.5
77,207 - EX31_RS06515 0.41 -0.8
77,207 - EX31_RS06515 0.41 -1.3
77,207 - EX31_RS06515 0.41 -0.3
77,316 + EX31_RS06515 0.49 -0.8
77,316 + EX31_RS06515 0.49 +0.4
77,316 + EX31_RS06515 0.49 +0.0
77,328 - EX31_RS06515 0.50 -0.3
77,382 - EX31_RS06515 0.54 +0.1
77,453 + EX31_RS06515 0.59 -0.7
77,453 + EX31_RS06515 0.59 -0.8
77,453 + EX31_RS06515 0.59 +0.5
77,453 + EX31_RS06515 0.59 +0.3
77,610 - EX31_RS06515 0.71 +0.4
77,611 + EX31_RS06515 0.71 -0.3
77,611 + EX31_RS06515 0.71 +0.3
77,612 - EX31_RS06515 0.71 -1.0
77,612 - EX31_RS06515 0.71 -0.6
77,612 - EX31_RS06515 0.71 -0.6
77,612 - EX31_RS06515 0.71 -0.5
77,612 - EX31_RS06515 0.71 -1.9
77,612 - EX31_RS06515 0.71 -1.5
77,612 - EX31_RS06515 0.71 -0.4
77,647 + EX31_RS06515 0.74 -0.7
77,648 - EX31_RS06515 0.74 +0.2
77,680 + EX31_RS06515 0.76 -1.0
77,680 + EX31_RS06515 0.76 -0.6
77,799 - EX31_RS06515 0.85 -1.6
77,858 - EX31_RS06515 0.89 +0.3
77,920 + -0.3
78,006 - -1.3
78,036 + +1.0
78,044 - -0.3
78,044 - -0.4
78,088 - EX31_RS06520 0.13 -0.5
78,088 - EX31_RS06520 0.13 -1.0
78,088 - EX31_RS06520 0.13 -0.3
78,088 - EX31_RS06520 0.13 -0.2
78,089 + EX31_RS06520 0.13 -0.2
78,089 + EX31_RS06520 0.13 -1.6
78,090 - EX31_RS06520 0.13 -0.7
78,090 - EX31_RS06520 0.13 -0.8
78,090 - EX31_RS06520 0.13 +0.6
78,090 - EX31_RS06520 0.13 -0.5
78,144 + EX31_RS06520 0.20 -1.1
78,144 + EX31_RS06520 0.20 +0.7
78,144 + EX31_RS06520 0.20 -1.3
78,144 + EX31_RS06520 0.20 -1.1
78,145 - EX31_RS06520 0.20 +1.5
78,145 - EX31_RS06520 0.20 +0.2
78,145 - EX31_RS06520 0.20 +0.2
78,187 + EX31_RS06520 0.26 -1.8
78,358 + EX31_RS06520 0.49 -0.5
78,358 + EX31_RS06520 0.49 -0.7
78,381 - EX31_RS06520 0.53 -0.1
78,381 - EX31_RS06520 0.53 +0.3
78,435 + EX31_RS06520 0.60 -1.3
78,435 + EX31_RS06520 0.60 -0.7
78,435 + EX31_RS06520 0.60 +0.8
78,436 - EX31_RS06520 0.60 -0.2
78,436 - EX31_RS06520 0.60 +0.6
78,436 - EX31_RS06520 0.60 -0.2
78,528 - EX31_RS06520 0.73 +0.2
78,539 + EX31_RS06520 0.74 +0.6
78,539 + EX31_RS06520 0.74 -1.6
78,540 - EX31_RS06520 0.74 +0.0
78,540 - EX31_RS06520 0.74 -0.4
78,540 - EX31_RS06520 0.74 +0.5
78,540 - EX31_RS06520 0.74 -1.3
78,540 - EX31_RS06520 0.74 +0.7
78,572 - EX31_RS06520 0.79 +0.2
78,708 - -0.5
78,742 - +0.7
78,757 + -1.2
78,758 - +0.0
78,758 - -0.0
78,763 - +0.1
78,794 - -0.2
78,799 - -0.5
78,801 + +0.2
78,802 - +0.4
78,802 - -0.1
78,854 + -0.9
78,862 + -0.7
78,863 - -1.4
78,870 + +1.0
78,870 + +1.1
78,870 + -1.2
78,870 + +0.2
78,870 + +1.0
78,871 - +0.8
78,871 - +0.2
78,871 - +0.5
78,871 - -0.4
78,871 - -0.2
78,871 - -0.5
78,871 - -0.7
78,872 + +0.3
78,872 + -0.8
78,872 + +0.0
78,872 + -0.3
78,872 + +0.6
78,872 + -0.1
78,873 - +0.1
78,873 - +0.2
78,873 - -1.0
78,873 - -0.3
78,873 - -0.1
78,873 - +0.6
78,873 - -0.5
78,874 + -0.9
78,874 + -0.4
78,874 + -1.3
78,874 + +1.2
78,874 + +0.1
78,874 + +0.3
78,882 + +0.2
78,882 + -0.2
78,894 + +0.3
78,895 - -0.0
78,895 - +0.3
78,896 + -0.8
78,896 + +0.0
78,896 + -0.3
78,896 + +0.5
78,896 + -0.1
78,896 + -0.8
78,896 + -1.1
78,896 + -0.1
78,897 - -1.2
78,897 - -1.8
78,905 + -0.0
78,905 + +0.6
78,906 - +0.2
78,909 + +0.6
78,999 + EX31_RS06525 0.13 -0.2
78,999 + EX31_RS06525 0.13 -0.3
78,999 + EX31_RS06525 0.13 +0.0
78,999 + EX31_RS06525 0.13 +0.2

Or see this region's nucleotide sequence