Strain Fitness in Rahnella sp. WP5 around EX31_RS02575

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02570 and EX31_RS02575 are separated by 2 nucleotidesEX31_RS02575 and EX31_RS02580 overlap by 1 nucleotidesEX31_RS02580 and EX31_RS02585 overlap by 4 nucleotides EX31_RS02570: EX31_RS02570 - ABC transporter ATP-binding protein, at 545,030 to 546,829 _RS02570 EX31_RS02575: EX31_RS02575 - ABC transporter permease, at 546,832 to 547,749 _RS02575 EX31_RS02580: EX31_RS02580 - ABC transporter permease, at 547,749 to 548,723 _RS02580 EX31_RS02585: EX31_RS02585 - nucleoside hydrolase, at 548,720 to 549,682 _RS02585 Position (kb) 546 547 548Strain fitness (log2 ratio) -2 -1 0 1at 546.076 kb on + strand, within EX31_RS02570at 546.328 kb on + strand, within EX31_RS02570at 546.328 kb on + strand, within EX31_RS02570at 546.406 kb on + strand, within EX31_RS02570at 546.406 kb on + strand, within EX31_RS02570at 546.410 kb on + strand, within EX31_RS02570at 546.410 kb on + strand, within EX31_RS02570at 546.410 kb on + strand, within EX31_RS02570at 546.452 kb on - strand, within EX31_RS02570at 546.793 kb on + strandat 546.840 kb on + strandat 546.841 kb on - strandat 546.880 kb on + strandat 547.044 kb on + strand, within EX31_RS02575at 547.045 kb on - strand, within EX31_RS02575at 547.052 kb on + strand, within EX31_RS02575at 547.053 kb on - strand, within EX31_RS02575at 547.059 kb on + strand, within EX31_RS02575at 547.163 kb on + strand, within EX31_RS02575at 547.163 kb on + strand, within EX31_RS02575at 547.163 kb on + strand, within EX31_RS02575at 547.211 kb on + strand, within EX31_RS02575at 547.330 kb on - strand, within EX31_RS02575at 547.330 kb on - strand, within EX31_RS02575at 547.364 kb on + strand, within EX31_RS02575at 547.364 kb on + strand, within EX31_RS02575at 547.364 kb on + strand, within EX31_RS02575at 547.365 kb on - strand, within EX31_RS02575at 547.365 kb on - strand, within EX31_RS02575at 547.365 kb on - strand, within EX31_RS02575at 547.503 kb on - strand, within EX31_RS02575at 547.567 kb on + strand, within EX31_RS02575at 547.568 kb on - strand, within EX31_RS02575at 547.648 kb on + strand, within EX31_RS02575at 547.689 kb on - strandat 547.792 kb on + strandat 547.792 kb on + strandat 547.792 kb on + strandat 547.792 kb on + strandat 547.792 kb on + strandat 547.792 kb on + strandat 547.793 kb on - strandat 547.815 kb on - strandat 547.849 kb on + strand, within EX31_RS02580at 547.921 kb on + strand, within EX31_RS02580at 547.922 kb on - strand, within EX31_RS02580at 547.938 kb on + strand, within EX31_RS02580at 548.010 kb on + strand, within EX31_RS02580at 548.011 kb on - strand, within EX31_RS02580at 548.040 kb on + strand, within EX31_RS02580at 548.373 kb on + strand, within EX31_RS02580at 548.445 kb on - strand, within EX31_RS02580at 548.445 kb on - strand, within EX31_RS02580at 548.445 kb on - strand, within EX31_RS02580at 548.479 kb on + strand, within EX31_RS02580at 548.492 kb on + strand, within EX31_RS02580at 548.641 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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546,076 + EX31_RS02570 0.58 -1.4
546,328 + EX31_RS02570 0.72 -0.2
546,328 + EX31_RS02570 0.72 -0.3
546,406 + EX31_RS02570 0.76 +0.3
546,406 + EX31_RS02570 0.76 -0.6
546,410 + EX31_RS02570 0.77 +0.7
546,410 + EX31_RS02570 0.77 -0.9
546,410 + EX31_RS02570 0.77 +0.4
546,452 - EX31_RS02570 0.79 +0.1
546,793 + -0.0
546,840 + +0.9
546,841 - +0.2
546,880 + -0.6
547,044 + EX31_RS02575 0.23 -1.0
547,045 - EX31_RS02575 0.23 -1.6
547,052 + EX31_RS02575 0.24 -0.4
547,053 - EX31_RS02575 0.24 +0.9
547,059 + EX31_RS02575 0.25 +0.4
547,163 + EX31_RS02575 0.36 -0.0
547,163 + EX31_RS02575 0.36 -1.5
547,163 + EX31_RS02575 0.36 +0.4
547,211 + EX31_RS02575 0.41 -0.5
547,330 - EX31_RS02575 0.54 +0.7
547,330 - EX31_RS02575 0.54 -2.1
547,364 + EX31_RS02575 0.58 +0.2
547,364 + EX31_RS02575 0.58 -0.4
547,364 + EX31_RS02575 0.58 -0.1
547,365 - EX31_RS02575 0.58 -0.7
547,365 - EX31_RS02575 0.58 -1.9
547,365 - EX31_RS02575 0.58 -0.9
547,503 - EX31_RS02575 0.73 -0.8
547,567 + EX31_RS02575 0.80 -0.2
547,568 - EX31_RS02575 0.80 +0.1
547,648 + EX31_RS02575 0.89 -0.3
547,689 - +1.1
547,792 + -0.0
547,792 + -0.5
547,792 + -0.1
547,792 + -0.6
547,792 + +0.4
547,792 + -0.4
547,793 - -0.1
547,815 - -0.6
547,849 + EX31_RS02580 0.10 -0.7
547,921 + EX31_RS02580 0.18 +0.3
547,922 - EX31_RS02580 0.18 +1.3
547,938 + EX31_RS02580 0.19 +0.8
548,010 + EX31_RS02580 0.27 -0.1
548,011 - EX31_RS02580 0.27 -0.1
548,040 + EX31_RS02580 0.30 -0.1
548,373 + EX31_RS02580 0.64 -1.0
548,445 - EX31_RS02580 0.71 +0.8
548,445 - EX31_RS02580 0.71 -0.2
548,445 - EX31_RS02580 0.71 +0.2
548,479 + EX31_RS02580 0.75 +0.3
548,492 + EX31_RS02580 0.76 +0.3
548,641 + -0.3

Or see this region's nucleotide sequence