Strain Fitness in Rahnella sp. WP5 around EX31_RS18080

Experiment: NL-CCM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS18075 and EX31_RS18080 are separated by 5 nucleotidesEX31_RS18080 and EX31_RS18085 are separated by 110 nucleotides EX31_RS18075: EX31_RS18075 - ABC transporter ATP-binding protein, at 174,590 to 176,494 _RS18075 EX31_RS18080: EX31_RS18080 - bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL, at 176,500 to 178,620 _RS18080 EX31_RS18085: EX31_RS18085 - MOSC domain-containing protein, at 178,731 to 179,834 _RS18085 Position (kb) 176 177 178 179Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 175.516 kb on - strand, within EX31_RS18075at 175.518 kb on + strand, within EX31_RS18075at 175.618 kb on + strand, within EX31_RS18075at 175.773 kb on + strand, within EX31_RS18075at 175.774 kb on - strand, within EX31_RS18075at 175.774 kb on - strand, within EX31_RS18075at 175.782 kb on + strand, within EX31_RS18075at 175.783 kb on - strand, within EX31_RS18075at 175.787 kb on - strand, within EX31_RS18075at 175.795 kb on - strand, within EX31_RS18075at 175.795 kb on - strand, within EX31_RS18075at 175.876 kb on + strand, within EX31_RS18075at 175.877 kb on - strand, within EX31_RS18075at 175.922 kb on - strand, within EX31_RS18075at 176.041 kb on + strand, within EX31_RS18075at 176.042 kb on - strand, within EX31_RS18075at 176.042 kb on - strand, within EX31_RS18075at 176.042 kb on - strand, within EX31_RS18075at 176.042 kb on - strand, within EX31_RS18075at 176.070 kb on - strand, within EX31_RS18075at 176.194 kb on - strand, within EX31_RS18075at 176.251 kb on + strand, within EX31_RS18075at 176.252 kb on - strand, within EX31_RS18075at 176.252 kb on - strand, within EX31_RS18075at 176.252 kb on - strand, within EX31_RS18075at 176.252 kb on - strand, within EX31_RS18075at 176.252 kb on - strand, within EX31_RS18075at 176.252 kb on - strand, within EX31_RS18075at 176.311 kb on - strandat 176.318 kb on - strandat 176.318 kb on - strandat 176.423 kb on + strandat 176.423 kb on + strandat 176.480 kb on - strandat 176.480 kb on - strandat 176.482 kb on + strandat 176.483 kb on - strandat 176.483 kb on - strandat 176.487 kb on - strandat 176.494 kb on + strandat 176.495 kb on - strandat 176.495 kb on - strandat 176.495 kb on - strandat 176.538 kb on + strandat 176.538 kb on + strandat 176.664 kb on + strandat 176.665 kb on - strandat 176.665 kb on - strandat 176.665 kb on - strandat 176.665 kb on - strandat 176.665 kb on - strandat 176.665 kb on - strandat 176.665 kb on - strandat 176.665 kb on - strandat 176.665 kb on - strandat 176.684 kb on - strandat 176.728 kb on + strand, within EX31_RS18080at 176.729 kb on - strand, within EX31_RS18080at 176.729 kb on - strand, within EX31_RS18080at 176.729 kb on - strand, within EX31_RS18080at 176.729 kb on - strand, within EX31_RS18080at 176.729 kb on - strand, within EX31_RS18080at 176.749 kb on - strand, within EX31_RS18080at 176.749 kb on - strand, within EX31_RS18080at 176.819 kb on + strand, within EX31_RS18080at 176.820 kb on - strand, within EX31_RS18080at 176.820 kb on - strand, within EX31_RS18080at 176.820 kb on - strand, within EX31_RS18080at 176.842 kb on - strand, within EX31_RS18080at 176.842 kb on - strand, within EX31_RS18080at 176.842 kb on - strand, within EX31_RS18080at 176.904 kb on - strand, within EX31_RS18080at 176.916 kb on + strand, within EX31_RS18080at 176.916 kb on + strand, within EX31_RS18080at 176.916 kb on + strand, within EX31_RS18080at 176.917 kb on - strand, within EX31_RS18080at 176.917 kb on - strand, within EX31_RS18080at 176.917 kb on - strand, within EX31_RS18080at 176.917 kb on - strand, within EX31_RS18080at 176.917 kb on - strand, within EX31_RS18080at 176.917 kb on - strand, within EX31_RS18080at 176.917 kb on - strand, within EX31_RS18080at 176.917 kb on - strand, within EX31_RS18080at 176.917 kb on - strand, within EX31_RS18080at 176.917 kb on - strand, within EX31_RS18080at 176.921 kb on - strand, within EX31_RS18080at 176.921 kb on - strand, within EX31_RS18080at 176.921 kb on - strand, within EX31_RS18080at 176.979 kb on - strand, within EX31_RS18080at 176.979 kb on - strand, within EX31_RS18080at 176.979 kb on - strand, within EX31_RS18080at 177.096 kb on + strand, within EX31_RS18080at 177.208 kb on - strand, within EX31_RS18080at 177.208 kb on - strand, within EX31_RS18080at 177.233 kb on - strand, within EX31_RS18080at 177.318 kb on - strand, within EX31_RS18080at 177.337 kb on - strand, within EX31_RS18080at 177.338 kb on + strand, within EX31_RS18080at 177.339 kb on - strand, within EX31_RS18080at 177.360 kb on - strand, within EX31_RS18080at 177.360 kb on - strand, within EX31_RS18080at 177.360 kb on - strand, within EX31_RS18080at 177.625 kb on - strand, within EX31_RS18080at 177.625 kb on - strand, within EX31_RS18080at 177.643 kb on - strand, within EX31_RS18080at 177.643 kb on - strand, within EX31_RS18080at 177.643 kb on - strand, within EX31_RS18080at 177.818 kb on - strand, within EX31_RS18080at 177.967 kb on + strand, within EX31_RS18080at 177.968 kb on - strand, within EX31_RS18080at 177.968 kb on - strand, within EX31_RS18080at 177.968 kb on - strand, within EX31_RS18080at 178.075 kb on + strand, within EX31_RS18080at 178.076 kb on - strand, within EX31_RS18080at 178.076 kb on - strand, within EX31_RS18080at 178.076 kb on - strand, within EX31_RS18080at 178.183 kb on - strand, within EX31_RS18080at 178.404 kb on - strand, within EX31_RS18080at 178.477 kb on + strandat 178.477 kb on + strandat 178.477 kb on + strandat 178.477 kb on + strandat 178.478 kb on - strandat 178.629 kb on - strandat 178.629 kb on - strandat 178.629 kb on - strandat 178.629 kb on - strandat 178.629 kb on - strandat 178.657 kb on - strandat 178.657 kb on - strandat 178.658 kb on + strandat 178.659 kb on - strandat 178.659 kb on - strandat 178.659 kb on - strandat 178.659 kb on - strandat 178.662 kb on + strandat 178.662 kb on + strandat 178.662 kb on + strandat 178.663 kb on - strandat 178.663 kb on - strandat 178.663 kb on - strandat 178.663 kb on - strandat 178.681 kb on + strandat 178.682 kb on - strandat 178.700 kb on + strandat 178.708 kb on + strandat 178.709 kb on - strandat 178.709 kb on - strandat 178.709 kb on - strandat 178.750 kb on + strandat 178.751 kb on - strandat 178.751 kb on - strandat 178.794 kb on + strandat 178.844 kb on + strand, within EX31_RS18085at 178.868 kb on + strand, within EX31_RS18085at 178.869 kb on - strand, within EX31_RS18085at 179.022 kb on - strand, within EX31_RS18085at 179.059 kb on + strand, within EX31_RS18085at 179.060 kb on - strand, within EX31_RS18085at 179.060 kb on - strand, within EX31_RS18085at 179.067 kb on + strand, within EX31_RS18085at 179.067 kb on + strand, within EX31_RS18085at 179.067 kb on + strand, within EX31_RS18085at 179.067 kb on + strand, within EX31_RS18085at 179.067 kb on + strand, within EX31_RS18085at 179.068 kb on - strand, within EX31_RS18085at 179.068 kb on - strand, within EX31_RS18085at 179.071 kb on + strand, within EX31_RS18085at 179.071 kb on + strand, within EX31_RS18085at 179.072 kb on - strand, within EX31_RS18085at 179.072 kb on - strand, within EX31_RS18085at 179.169 kb on + strand, within EX31_RS18085at 179.203 kb on + strand, within EX31_RS18085at 179.203 kb on + strand, within EX31_RS18085at 179.277 kb on + strand, within EX31_RS18085at 179.278 kb on - strand, within EX31_RS18085at 179.352 kb on - strand, within EX31_RS18085at 179.555 kb on + strand, within EX31_RS18085at 179.606 kb on + strand, within EX31_RS18085at 179.606 kb on + strand, within EX31_RS18085at 179.606 kb on + strand, within EX31_RS18085at 179.607 kb on - strand, within EX31_RS18085at 179.607 kb on - strand, within EX31_RS18085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
remove
175,516 - EX31_RS18075 0.49 +0.1
175,518 + EX31_RS18075 0.49 -1.1
175,618 + EX31_RS18075 0.54 +0.5
175,773 + EX31_RS18075 0.62 +0.3
175,774 - EX31_RS18075 0.62 +0.6
175,774 - EX31_RS18075 0.62 -0.7
175,782 + EX31_RS18075 0.63 +0.8
175,783 - EX31_RS18075 0.63 -2.3
175,787 - EX31_RS18075 0.63 +0.2
175,795 - EX31_RS18075 0.63 +0.5
175,795 - EX31_RS18075 0.63 +0.5
175,876 + EX31_RS18075 0.68 -0.4
175,877 - EX31_RS18075 0.68 +0.3
175,922 - EX31_RS18075 0.70 +0.3
176,041 + EX31_RS18075 0.76 +0.3
176,042 - EX31_RS18075 0.76 +0.8
176,042 - EX31_RS18075 0.76 -0.3
176,042 - EX31_RS18075 0.76 +0.8
176,042 - EX31_RS18075 0.76 +0.3
176,070 - EX31_RS18075 0.78 -0.6
176,194 - EX31_RS18075 0.84 +0.5
176,251 + EX31_RS18075 0.87 -0.8
176,252 - EX31_RS18075 0.87 -1.5
176,252 - EX31_RS18075 0.87 +0.1
176,252 - EX31_RS18075 0.87 -0.3
176,252 - EX31_RS18075 0.87 -0.0
176,252 - EX31_RS18075 0.87 -1.0
176,252 - EX31_RS18075 0.87 -0.6
176,311 - -0.7
176,318 - +1.9
176,318 - -0.2
176,423 + +0.7
176,423 + +0.4
176,480 - +0.7
176,480 - +0.1
176,482 + +0.5
176,483 - +0.3
176,483 - -2.8
176,487 - +0.9
176,494 + -0.2
176,495 - -0.1
176,495 - -1.0
176,495 - -0.3
176,538 + +0.0
176,538 + +0.3
176,664 + +0.2
176,665 - +0.2
176,665 - -0.2
176,665 - -0.3
176,665 - -0.8
176,665 - +0.2
176,665 - -1.8
176,665 - +0.0
176,665 - -0.3
176,665 - -0.8
176,684 - -0.2
176,728 + EX31_RS18080 0.11 +0.1
176,729 - EX31_RS18080 0.11 -0.9
176,729 - EX31_RS18080 0.11 -0.8
176,729 - EX31_RS18080 0.11 -0.1
176,729 - EX31_RS18080 0.11 +0.4
176,729 - EX31_RS18080 0.11 +0.2
176,749 - EX31_RS18080 0.12 -0.1
176,749 - EX31_RS18080 0.12 +0.5
176,819 + EX31_RS18080 0.15 -0.6
176,820 - EX31_RS18080 0.15 -0.0
176,820 - EX31_RS18080 0.15 -0.2
176,820 - EX31_RS18080 0.15 +1.0
176,842 - EX31_RS18080 0.16 -2.1
176,842 - EX31_RS18080 0.16 -0.7
176,842 - EX31_RS18080 0.16 -0.7
176,904 - EX31_RS18080 0.19 -1.0
176,916 + EX31_RS18080 0.20 -0.9
176,916 + EX31_RS18080 0.20 -1.3
176,916 + EX31_RS18080 0.20 -0.9
176,917 - EX31_RS18080 0.20 -0.1
176,917 - EX31_RS18080 0.20 +0.4
176,917 - EX31_RS18080 0.20 -0.6
176,917 - EX31_RS18080 0.20 -0.2
176,917 - EX31_RS18080 0.20 -0.9
176,917 - EX31_RS18080 0.20 -0.5
176,917 - EX31_RS18080 0.20 -0.2
176,917 - EX31_RS18080 0.20 -0.1
176,917 - EX31_RS18080 0.20 -1.0
176,917 - EX31_RS18080 0.20 +0.7
176,921 - EX31_RS18080 0.20 +0.3
176,921 - EX31_RS18080 0.20 -0.9
176,921 - EX31_RS18080 0.20 +0.0
176,979 - EX31_RS18080 0.23 -1.1
176,979 - EX31_RS18080 0.23 +1.0
176,979 - EX31_RS18080 0.23 -0.7
177,096 + EX31_RS18080 0.28 -0.7
177,208 - EX31_RS18080 0.33 +0.8
177,208 - EX31_RS18080 0.33 +0.9
177,233 - EX31_RS18080 0.35 -0.4
177,318 - EX31_RS18080 0.39 +0.2
177,337 - EX31_RS18080 0.39 +0.0
177,338 + EX31_RS18080 0.40 +1.2
177,339 - EX31_RS18080 0.40 -0.1
177,360 - EX31_RS18080 0.41 +1.0
177,360 - EX31_RS18080 0.41 -0.3
177,360 - EX31_RS18080 0.41 +0.6
177,625 - EX31_RS18080 0.53 -0.4
177,625 - EX31_RS18080 0.53 +0.2
177,643 - EX31_RS18080 0.54 -1.0
177,643 - EX31_RS18080 0.54 -1.8
177,643 - EX31_RS18080 0.54 -0.5
177,818 - EX31_RS18080 0.62 -0.6
177,967 + EX31_RS18080 0.69 +0.7
177,968 - EX31_RS18080 0.69 -0.5
177,968 - EX31_RS18080 0.69 -0.3
177,968 - EX31_RS18080 0.69 -1.1
178,075 + EX31_RS18080 0.74 +0.3
178,076 - EX31_RS18080 0.74 -0.8
178,076 - EX31_RS18080 0.74 +0.1
178,076 - EX31_RS18080 0.74 -0.1
178,183 - EX31_RS18080 0.79 +0.2
178,404 - EX31_RS18080 0.90 +0.2
178,477 + +1.5
178,477 + -1.3
178,477 + -0.7
178,477 + -1.8
178,478 - +0.2
178,629 - -0.5
178,629 - +0.5
178,629 - -0.3
178,629 - +0.2
178,629 - +0.7
178,657 - -1.3
178,657 - +2.7
178,658 + +0.6
178,659 - +0.3
178,659 - -0.6
178,659 - +0.8
178,659 - +0.6
178,662 + +0.7
178,662 + -1.1
178,662 + -0.8
178,663 - +0.4
178,663 - +1.1
178,663 - -0.3
178,663 - +0.4
178,681 + +0.4
178,682 - +0.6
178,700 + +0.9
178,708 + +0.4
178,709 - -0.2
178,709 - -0.2
178,709 - +0.4
178,750 + +0.8
178,751 - -0.2
178,751 - +0.0
178,794 + -1.4
178,844 + EX31_RS18085 0.10 -0.2
178,868 + EX31_RS18085 0.12 -0.5
178,869 - EX31_RS18085 0.12 -0.3
179,022 - EX31_RS18085 0.26 +0.2
179,059 + EX31_RS18085 0.30 +0.2
179,060 - EX31_RS18085 0.30 +0.4
179,060 - EX31_RS18085 0.30 -1.1
179,067 + EX31_RS18085 0.30 +0.3
179,067 + EX31_RS18085 0.30 -0.2
179,067 + EX31_RS18085 0.30 +0.6
179,067 + EX31_RS18085 0.30 -0.7
179,067 + EX31_RS18085 0.30 +0.5
179,068 - EX31_RS18085 0.31 -0.0
179,068 - EX31_RS18085 0.31 -0.2
179,071 + EX31_RS18085 0.31 -0.5
179,071 + EX31_RS18085 0.31 +0.1
179,072 - EX31_RS18085 0.31 +1.4
179,072 - EX31_RS18085 0.31 -0.8
179,169 + EX31_RS18085 0.40 +0.5
179,203 + EX31_RS18085 0.43 +0.4
179,203 + EX31_RS18085 0.43 -0.1
179,277 + EX31_RS18085 0.49 -0.3
179,278 - EX31_RS18085 0.50 +0.8
179,352 - EX31_RS18085 0.56 +0.8
179,555 + EX31_RS18085 0.75 +0.6
179,606 + EX31_RS18085 0.79 +0.2
179,606 + EX31_RS18085 0.79 +0.3
179,606 + EX31_RS18085 0.79 -1.7
179,607 - EX31_RS18085 0.79 +0.5
179,607 - EX31_RS18085 0.79 +1.2

Or see this region's nucleotide sequence