Experiment: NL-CCM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08075 and EX31_RS08080 are separated by 116 nucleotides EX31_RS08080 and EX31_RS25975 overlap by 4 nucleotides EX31_RS25975 and EX31_RS25980 are separated by 27 nucleotides
EX31_RS08075: EX31_RS08075 - DNA topoisomerase IV subunit B, at 106,823 to 108,718
_RS08075
EX31_RS08080: EX31_RS08080 - esterase YqiA, at 108,835 to 109,416
_RS08080
EX31_RS25975: EX31_RS25975 - 3',5'-cyclic-AMP phosphodiesterase, at 109,413 to 110,243
_RS25975
EX31_RS25980: EX31_RS25980 - DUF1249 family protein, at 110,271 to 110,696
_RS25980
Position (kb) 108
109
110 Strain fitness (log2 ratio) -2
-1
0
1
2 at 108.759 kb on - strand at 108.759 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.764 kb on - strand at 108.802 kb on - strand at 108.802 kb on - strand at 108.804 kb on - strand at 108.804 kb on - strand at 108.837 kb on - strand at 108.837 kb on - strand at 108.837 kb on - strand at 108.837 kb on - strand at 108.942 kb on - strand, within EX31_RS08080 at 108.942 kb on - strand, within EX31_RS08080 at 109.067 kb on - strand, within EX31_RS08080 at 109.067 kb on - strand, within EX31_RS08080 at 109.067 kb on - strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.073 kb on + strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.074 kb on - strand, within EX31_RS08080 at 109.089 kb on - strand, within EX31_RS08080 at 109.130 kb on + strand, within EX31_RS08080 at 109.130 kb on + strand, within EX31_RS08080 at 109.130 kb on + strand, within EX31_RS08080 at 109.130 kb on + strand, within EX31_RS08080 at 109.131 kb on - strand, within EX31_RS08080 at 109.131 kb on - strand, within EX31_RS08080 at 109.131 kb on - strand, within EX31_RS08080 at 109.191 kb on + strand, within EX31_RS08080 at 109.191 kb on + strand, within EX31_RS08080 at 109.192 kb on - strand, within EX31_RS08080 at 109.196 kb on + strand, within EX31_RS08080 at 109.196 kb on + strand, within EX31_RS08080 at 109.196 kb on + strand, within EX31_RS08080 at 109.196 kb on + strand, within EX31_RS08080 at 109.196 kb on + strand, within EX31_RS08080 at 109.196 kb on + strand, within EX31_RS08080 at 109.196 kb on + strand, within EX31_RS08080 at 109.197 kb on - strand, within EX31_RS08080 at 109.197 kb on - strand, within EX31_RS08080 at 109.197 kb on - strand, within EX31_RS08080 at 109.197 kb on - strand, within EX31_RS08080 at 109.199 kb on + strand, within EX31_RS08080 at 109.297 kb on + strand, within EX31_RS08080 at 109.315 kb on - strand, within EX31_RS08080 at 109.351 kb on + strand, within EX31_RS08080 at 109.400 kb on + strand at 109.400 kb on + strand at 109.400 kb on + strand at 109.401 kb on - strand at 109.405 kb on + strand at 109.405 kb on + strand at 109.405 kb on + strand at 109.405 kb on + strand at 109.405 kb on + strand at 109.405 kb on + strand at 109.405 kb on + strand at 109.405 kb on + strand at 109.406 kb on - strand at 109.406 kb on - strand at 109.406 kb on - strand at 109.406 kb on - strand at 109.406 kb on - strand at 109.406 kb on - strand at 109.406 kb on - strand at 109.406 kb on - strand at 109.406 kb on - strand at 109.569 kb on + strand, within EX31_RS25975 at 109.570 kb on - strand, within EX31_RS25975 at 109.570 kb on - strand, within EX31_RS25975 at 109.592 kb on - strand, within EX31_RS25975 at 109.592 kb on - strand, within EX31_RS25975 at 109.606 kb on + strand, within EX31_RS25975 at 109.634 kb on + strand, within EX31_RS25975 at 109.634 kb on + strand, within EX31_RS25975 at 109.634 kb on + strand, within EX31_RS25975 at 109.634 kb on + strand, within EX31_RS25975 at 109.634 kb on + strand, within EX31_RS25975 at 109.634 kb on + strand, within EX31_RS25975 at 109.634 kb on + strand, within EX31_RS25975 at 109.634 kb on + strand, within EX31_RS25975 at 109.634 kb on + strand, within EX31_RS25975 at 109.635 kb on - strand, within EX31_RS25975 at 109.635 kb on - strand, within EX31_RS25975 at 109.635 kb on - strand, within EX31_RS25975 at 109.635 kb on - strand, within EX31_RS25975 at 109.635 kb on - strand, within EX31_RS25975 at 109.635 kb on - strand, within EX31_RS25975 at 109.653 kb on - strand, within EX31_RS25975 at 109.672 kb on - strand, within EX31_RS25975 at 109.672 kb on - strand, within EX31_RS25975 at 109.691 kb on + strand, within EX31_RS25975 at 109.691 kb on + strand, within EX31_RS25975 at 109.692 kb on - strand, within EX31_RS25975 at 109.692 kb on - strand, within EX31_RS25975 at 109.692 kb on - strand, within EX31_RS25975 at 109.692 kb on - strand, within EX31_RS25975 at 109.692 kb on - strand, within EX31_RS25975 at 109.692 kb on - strand, within EX31_RS25975 at 109.755 kb on + strand, within EX31_RS25975 at 109.755 kb on + strand, within EX31_RS25975 at 109.755 kb on + strand, within EX31_RS25975 at 109.755 kb on + strand, within EX31_RS25975 at 109.755 kb on + strand, within EX31_RS25975 at 109.755 kb on + strand, within EX31_RS25975 at 109.755 kb on + strand, within EX31_RS25975 at 109.755 kb on + strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.756 kb on - strand, within EX31_RS25975 at 109.820 kb on - strand, within EX31_RS25975 at 109.860 kb on - strand, within EX31_RS25975 at 109.860 kb on - strand, within EX31_RS25975 at 109.904 kb on + strand, within EX31_RS25975 at 109.905 kb on - strand, within EX31_RS25975 at 109.905 kb on - strand, within EX31_RS25975 at 110.024 kb on - strand, within EX31_RS25975 at 110.072 kb on + strand, within EX31_RS25975 at 110.119 kb on + strand, within EX31_RS25975 at 110.120 kb on - strand, within EX31_RS25975 at 110.127 kb on - strand, within EX31_RS25975 at 110.133 kb on - strand, within EX31_RS25975 at 110.142 kb on + strand, within EX31_RS25975 at 110.143 kb on - strand, within EX31_RS25975 at 110.183 kb on + strand at 110.184 kb on - strand at 110.184 kb on - strand at 110.184 kb on - strand at 110.191 kb on - strand at 110.191 kb on - strand at 110.228 kb on + strand at 110.228 kb on + strand at 110.228 kb on + strand at 110.228 kb on + strand at 110.228 kb on + strand at 110.229 kb on - strand at 110.229 kb on - strand at 110.273 kb on - strand at 110.339 kb on + strand, within EX31_RS25980 at 110.384 kb on - strand, within EX31_RS25980 at 110.390 kb on - strand, within EX31_RS25980 at 110.390 kb on - strand, within EX31_RS25980 at 110.399 kb on + strand, within EX31_RS25980
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM remove 108,759 - -0.1 108,759 - -0.3 108,764 - +0.6 108,764 - +0.6 108,764 - -0.1 108,764 - +0.1 108,764 - +0.3 108,764 - -0.9 108,764 - -0.4 108,764 - -0.6 108,764 - +0.4 108,764 - -0.4 108,764 - -0.3 108,764 - -0.4 108,764 - -0.3 108,764 - +0.0 108,764 - -0.5 108,764 - +0.6 108,764 - +0.3 108,764 - -0.7 108,764 - -0.1 108,764 - -0.4 108,764 - +0.4 108,764 - +0.2 108,764 - -0.3 108,764 - -0.1 108,802 - -0.3 108,802 - -0.1 108,804 - +1.5 108,804 - -0.3 108,837 - +0.4 108,837 - -0.1 108,837 - -0.5 108,837 - +0.2 108,942 - EX31_RS08080 0.18 +0.9 108,942 - EX31_RS08080 0.18 +0.3 109,067 - EX31_RS08080 0.40 +2.0 109,067 - EX31_RS08080 0.40 -0.1 109,067 - EX31_RS08080 0.40 +0.1 109,073 + EX31_RS08080 0.41 -0.1 109,073 + EX31_RS08080 0.41 +0.1 109,073 + EX31_RS08080 0.41 -0.4 109,073 + EX31_RS08080 0.41 +0.1 109,073 + EX31_RS08080 0.41 +1.5 109,073 + EX31_RS08080 0.41 +0.1 109,073 + EX31_RS08080 0.41 +0.7 109,073 + EX31_RS08080 0.41 +0.3 109,073 + EX31_RS08080 0.41 +0.4 109,073 + EX31_RS08080 0.41 +0.3 109,073 + EX31_RS08080 0.41 +0.8 109,073 + EX31_RS08080 0.41 +0.0 109,073 + EX31_RS08080 0.41 +0.4 109,073 + EX31_RS08080 0.41 -0.2 109,073 + EX31_RS08080 0.41 +0.1 109,073 + EX31_RS08080 0.41 +0.8 109,073 + EX31_RS08080 0.41 -0.4 109,073 + EX31_RS08080 0.41 -0.7 109,073 + EX31_RS08080 0.41 +0.5 109,074 - EX31_RS08080 0.41 +0.5 109,074 - EX31_RS08080 0.41 +0.3 109,074 - EX31_RS08080 0.41 +1.4 109,074 - EX31_RS08080 0.41 +0.5 109,074 - EX31_RS08080 0.41 +0.4 109,074 - EX31_RS08080 0.41 +0.3 109,074 - EX31_RS08080 0.41 +0.9 109,074 - EX31_RS08080 0.41 +0.4 109,074 - EX31_RS08080 0.41 +0.3 109,074 - EX31_RS08080 0.41 +1.1 109,074 - EX31_RS08080 0.41 +0.2 109,074 - EX31_RS08080 0.41 -0.1 109,074 - EX31_RS08080 0.41 -0.3 109,074 - EX31_RS08080 0.41 -0.5 109,074 - EX31_RS08080 0.41 +0.0 109,074 - EX31_RS08080 0.41 -0.2 109,074 - EX31_RS08080 0.41 +0.5 109,074 - EX31_RS08080 0.41 +0.7 109,074 - EX31_RS08080 0.41 +0.3 109,089 - EX31_RS08080 0.44 +0.1 109,130 + EX31_RS08080 0.51 +1.0 109,130 + EX31_RS08080 0.51 +0.0 109,130 + EX31_RS08080 0.51 +0.2 109,130 + EX31_RS08080 0.51 +0.2 109,131 - EX31_RS08080 0.51 +1.0 109,131 - EX31_RS08080 0.51 +0.3 109,131 - EX31_RS08080 0.51 -0.6 109,191 + EX31_RS08080 0.61 +0.5 109,191 + EX31_RS08080 0.61 +0.2 109,192 - EX31_RS08080 0.61 +1.0 109,196 + EX31_RS08080 0.62 +0.2 109,196 + EX31_RS08080 0.62 +1.1 109,196 + EX31_RS08080 0.62 +0.4 109,196 + EX31_RS08080 0.62 +0.2 109,196 + EX31_RS08080 0.62 -0.1 109,196 + EX31_RS08080 0.62 -0.0 109,196 + EX31_RS08080 0.62 -0.2 109,197 - EX31_RS08080 0.62 +0.2 109,197 - EX31_RS08080 0.62 +0.2 109,197 - EX31_RS08080 0.62 -0.9 109,197 - EX31_RS08080 0.62 +0.2 109,199 + EX31_RS08080 0.63 +0.4 109,297 + EX31_RS08080 0.79 -0.8 109,315 - EX31_RS08080 0.82 +0.2 109,351 + EX31_RS08080 0.89 -0.2 109,400 + +0.4 109,400 + +0.8 109,400 + +0.1 109,401 - +0.4 109,405 + +0.2 109,405 + +0.9 109,405 + +0.1 109,405 + -0.2 109,405 + +0.2 109,405 + -0.7 109,405 + -0.3 109,405 + +0.3 109,406 - -0.1 109,406 - +0.3 109,406 - +0.0 109,406 - +0.4 109,406 - -0.1 109,406 - -0.1 109,406 - +1.1 109,406 - -1.0 109,406 - +0.3 109,569 + EX31_RS25975 0.19 +0.5 109,570 - EX31_RS25975 0.19 -0.1 109,570 - EX31_RS25975 0.19 -0.1 109,592 - EX31_RS25975 0.22 +0.3 109,592 - EX31_RS25975 0.22 -0.6 109,606 + EX31_RS25975 0.23 -0.3 109,634 + EX31_RS25975 0.27 -0.4 109,634 + EX31_RS25975 0.27 -0.9 109,634 + EX31_RS25975 0.27 -0.2 109,634 + EX31_RS25975 0.27 -0.5 109,634 + EX31_RS25975 0.27 +0.3 109,634 + EX31_RS25975 0.27 -0.2 109,634 + EX31_RS25975 0.27 +0.8 109,634 + EX31_RS25975 0.27 -0.1 109,634 + EX31_RS25975 0.27 +0.0 109,635 - EX31_RS25975 0.27 -0.7 109,635 - EX31_RS25975 0.27 -0.2 109,635 - EX31_RS25975 0.27 -0.2 109,635 - EX31_RS25975 0.27 +0.6 109,635 - EX31_RS25975 0.27 -0.8 109,635 - EX31_RS25975 0.27 +0.7 109,653 - EX31_RS25975 0.29 +0.1 109,672 - EX31_RS25975 0.31 -0.3 109,672 - EX31_RS25975 0.31 -0.3 109,691 + EX31_RS25975 0.33 +1.2 109,691 + EX31_RS25975 0.33 -0.8 109,692 - EX31_RS25975 0.34 -0.7 109,692 - EX31_RS25975 0.34 +0.1 109,692 - EX31_RS25975 0.34 -0.1 109,692 - EX31_RS25975 0.34 +0.1 109,692 - EX31_RS25975 0.34 -0.3 109,692 - EX31_RS25975 0.34 +0.1 109,755 + EX31_RS25975 0.41 -1.1 109,755 + EX31_RS25975 0.41 -1.9 109,755 + EX31_RS25975 0.41 +0.8 109,755 + EX31_RS25975 0.41 +0.0 109,755 + EX31_RS25975 0.41 +0.1 109,755 + EX31_RS25975 0.41 -0.1 109,755 + EX31_RS25975 0.41 -0.1 109,755 + EX31_RS25975 0.41 -0.2 109,756 - EX31_RS25975 0.41 +0.1 109,756 - EX31_RS25975 0.41 -0.2 109,756 - EX31_RS25975 0.41 +0.6 109,756 - EX31_RS25975 0.41 -0.9 109,756 - EX31_RS25975 0.41 -0.2 109,756 - EX31_RS25975 0.41 -1.5 109,756 - EX31_RS25975 0.41 +0.4 109,756 - EX31_RS25975 0.41 -0.4 109,756 - EX31_RS25975 0.41 +0.1 109,756 - EX31_RS25975 0.41 +0.4 109,756 - EX31_RS25975 0.41 -0.3 109,756 - EX31_RS25975 0.41 -0.3 109,756 - EX31_RS25975 0.41 +0.8 109,756 - EX31_RS25975 0.41 +0.2 109,756 - EX31_RS25975 0.41 -2.3 109,756 - EX31_RS25975 0.41 +0.6 109,756 - EX31_RS25975 0.41 -0.3 109,820 - EX31_RS25975 0.49 -0.4 109,860 - EX31_RS25975 0.54 -0.2 109,860 - EX31_RS25975 0.54 -1.4 109,904 + EX31_RS25975 0.59 +0.3 109,905 - EX31_RS25975 0.59 +0.4 109,905 - EX31_RS25975 0.59 +1.3 110,024 - EX31_RS25975 0.74 +0.3 110,072 + EX31_RS25975 0.79 +0.6 110,119 + EX31_RS25975 0.85 -1.2 110,120 - EX31_RS25975 0.85 -0.5 110,127 - EX31_RS25975 0.86 +0.1 110,133 - EX31_RS25975 0.87 -0.6 110,142 + EX31_RS25975 0.88 +1.1 110,143 - EX31_RS25975 0.88 -0.3 110,183 + +0.6 110,184 - -0.8 110,184 - +0.6 110,184 - -0.7 110,191 - -0.4 110,191 - +0.2 110,228 + +0.6 110,228 + +0.2 110,228 + +0.2 110,228 + +0.1 110,228 + -0.9 110,229 - -0.0 110,229 - -0.4 110,273 - -0.8 110,339 + EX31_RS25980 0.16 -0.7 110,384 - EX31_RS25980 0.27 +0.6 110,390 - EX31_RS25980 0.28 +0.4 110,390 - EX31_RS25980 0.28 +0.5 110,399 + EX31_RS25980 0.30 -0.8
Or see this region's nucleotide sequence