Experiment: NL-CCM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS05915 and EX31_RS05920 are separated by 43 nucleotides EX31_RS05920 and EX31_RS05925 overlap by 4 nucleotides
EX31_RS05915: EX31_RS05915 - xylose isomerase, at 339,549 to 340,298
_RS05915
EX31_RS05920: EX31_RS05920 - MFS transporter, at 340,342 to 341,634
_RS05920
EX31_RS05925: EX31_RS05925 - glyoxylate/hydroxypyruvate reductase GhrB, at 341,631 to 342,608
_RS05925
Position (kb) 340
341
342 Strain fitness (log2 ratio) -2
-1
0
1 at 339.384 kb on - strand at 339.384 kb on - strand at 339.384 kb on - strand at 339.384 kb on - strand at 339.426 kb on - strand at 339.432 kb on + strand at 339.432 kb on + strand at 339.434 kb on + strand at 339.435 kb on - strand at 339.483 kb on + strand at 339.488 kb on + strand at 339.488 kb on + strand at 339.488 kb on + strand at 339.488 kb on + strand at 339.489 kb on - strand at 339.520 kb on + strand at 339.521 kb on - strand at 339.521 kb on - strand at 339.540 kb on + strand at 339.540 kb on + strand at 339.540 kb on + strand at 339.540 kb on + strand at 339.541 kb on - strand at 339.541 kb on - strand at 339.541 kb on - strand at 339.544 kb on + strand at 339.544 kb on + strand at 339.544 kb on + strand at 339.545 kb on - strand at 339.545 kb on - strand at 339.545 kb on - strand at 339.545 kb on - strand at 339.545 kb on - strand at 339.545 kb on - strand at 339.545 kb on - strand at 339.598 kb on + strand at 339.598 kb on + strand at 339.598 kb on + strand at 339.598 kb on + strand at 339.599 kb on - strand at 339.647 kb on + strand, within EX31_RS05915 at 339.647 kb on + strand, within EX31_RS05915 at 339.648 kb on - strand, within EX31_RS05915 at 339.753 kb on + strand, within EX31_RS05915 at 339.753 kb on + strand, within EX31_RS05915 at 339.753 kb on + strand, within EX31_RS05915 at 339.753 kb on + strand, within EX31_RS05915 at 339.753 kb on + strand, within EX31_RS05915 at 339.754 kb on - strand, within EX31_RS05915 at 339.754 kb on - strand, within EX31_RS05915 at 339.754 kb on - strand, within EX31_RS05915 at 339.754 kb on - strand, within EX31_RS05915 at 339.794 kb on + strand, within EX31_RS05915 at 339.795 kb on - strand, within EX31_RS05915 at 339.795 kb on - strand, within EX31_RS05915 at 339.795 kb on - strand, within EX31_RS05915 at 339.795 kb on - strand, within EX31_RS05915 at 339.813 kb on + strand, within EX31_RS05915 at 339.851 kb on + strand, within EX31_RS05915 at 339.851 kb on + strand, within EX31_RS05915 at 339.852 kb on - strand, within EX31_RS05915 at 339.907 kb on + strand, within EX31_RS05915 at 339.908 kb on - strand, within EX31_RS05915 at 339.908 kb on - strand, within EX31_RS05915 at 339.989 kb on + strand, within EX31_RS05915 at 339.989 kb on + strand, within EX31_RS05915 at 339.990 kb on - strand, within EX31_RS05915 at 339.990 kb on - strand, within EX31_RS05915 at 339.990 kb on - strand, within EX31_RS05915 at 339.990 kb on - strand, within EX31_RS05915 at 339.990 kb on - strand, within EX31_RS05915 at 340.107 kb on + strand, within EX31_RS05915 at 340.108 kb on - strand, within EX31_RS05915 at 340.108 kb on - strand, within EX31_RS05915 at 340.108 kb on - strand, within EX31_RS05915 at 340.192 kb on + strand, within EX31_RS05915 at 340.276 kb on - strand at 340.279 kb on + strand at 340.279 kb on + strand at 340.279 kb on + strand at 340.280 kb on - strand at 340.280 kb on - strand at 340.280 kb on - strand at 340.280 kb on - strand at 340.280 kb on - strand at 340.280 kb on - strand at 340.280 kb on - strand at 340.288 kb on + strand at 340.289 kb on - strand at 340.289 kb on - strand at 340.289 kb on - strand at 340.325 kb on + strand at 340.325 kb on + strand at 340.326 kb on - strand at 340.326 kb on - strand at 340.341 kb on + strand at 340.341 kb on + strand at 340.341 kb on + strand at 340.342 kb on - strand at 340.342 kb on - strand at 340.342 kb on - strand at 340.378 kb on + strand at 340.378 kb on + strand at 340.378 kb on + strand at 340.378 kb on + strand at 340.378 kb on + strand at 340.378 kb on + strand at 340.378 kb on + strand at 340.378 kb on + strand at 340.379 kb on - strand at 340.379 kb on - strand at 340.379 kb on - strand at 340.379 kb on - strand at 340.379 kb on - strand at 340.379 kb on - strand at 340.379 kb on - strand at 340.379 kb on - strand at 340.379 kb on - strand at 340.405 kb on + strand at 340.405 kb on + strand at 340.405 kb on + strand at 340.405 kb on + strand at 340.405 kb on + strand at 340.406 kb on - strand at 340.406 kb on - strand at 340.406 kb on - strand at 340.406 kb on - strand at 340.406 kb on - strand at 340.417 kb on + strand at 340.417 kb on + strand at 340.417 kb on + strand at 340.418 kb on - strand at 340.418 kb on - strand at 340.418 kb on - strand at 340.418 kb on - strand at 340.479 kb on + strand, within EX31_RS05920 at 340.480 kb on - strand, within EX31_RS05920 at 340.525 kb on + strand, within EX31_RS05920 at 340.526 kb on - strand, within EX31_RS05920 at 340.555 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.717 kb on + strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.718 kb on - strand, within EX31_RS05920 at 340.719 kb on + strand, within EX31_RS05920 at 340.720 kb on - strand, within EX31_RS05920 at 340.720 kb on - strand, within EX31_RS05920 at 340.720 kb on - strand, within EX31_RS05920 at 340.759 kb on - strand, within EX31_RS05920 at 340.891 kb on - strand, within EX31_RS05920 at 340.914 kb on + strand, within EX31_RS05920 at 340.914 kb on + strand, within EX31_RS05920 at 340.914 kb on + strand, within EX31_RS05920 at 340.914 kb on + strand, within EX31_RS05920 at 340.915 kb on - strand, within EX31_RS05920 at 340.915 kb on - strand, within EX31_RS05920 at 340.915 kb on - strand, within EX31_RS05920 at 341.059 kb on + strand, within EX31_RS05920 at 341.060 kb on - strand, within EX31_RS05920 at 341.060 kb on - strand, within EX31_RS05920 at 341.084 kb on - strand, within EX31_RS05920 at 341.084 kb on - strand, within EX31_RS05920 at 341.170 kb on + strand, within EX31_RS05920 at 341.171 kb on - strand, within EX31_RS05920 at 341.184 kb on + strand, within EX31_RS05920 at 341.232 kb on + strand, within EX31_RS05920 at 341.232 kb on + strand, within EX31_RS05920 at 341.232 kb on + strand, within EX31_RS05920 at 341.233 kb on - strand, within EX31_RS05920 at 341.320 kb on + strand, within EX31_RS05920 at 341.353 kb on + strand, within EX31_RS05920 at 341.353 kb on + strand, within EX31_RS05920 at 341.353 kb on + strand, within EX31_RS05920 at 341.353 kb on + strand, within EX31_RS05920 at 341.353 kb on + strand, within EX31_RS05920 at 341.353 kb on + strand, within EX31_RS05920 at 341.354 kb on - strand, within EX31_RS05920 at 341.354 kb on - strand, within EX31_RS05920 at 341.354 kb on - strand, within EX31_RS05920 at 341.354 kb on - strand, within EX31_RS05920 at 341.354 kb on - strand, within EX31_RS05920 at 341.382 kb on + strand, within EX31_RS05920 at 341.383 kb on - strand, within EX31_RS05920 at 341.496 kb on + strand, within EX31_RS05920 at 341.496 kb on + strand, within EX31_RS05920 at 341.496 kb on + strand, within EX31_RS05920 at 341.496 kb on + strand, within EX31_RS05920 at 341.496 kb on + strand, within EX31_RS05920 at 341.520 kb on + strand at 341.625 kb on + strand at 341.626 kb on - strand at 341.626 kb on - strand at 341.626 kb on - strand at 341.642 kb on + strand at 341.650 kb on + strand at 341.651 kb on - strand at 341.651 kb on - strand at 341.653 kb on - strand at 341.801 kb on + strand, within EX31_RS05925 at 341.860 kb on - strand, within EX31_RS05925 at 341.864 kb on + strand, within EX31_RS05925 at 341.912 kb on + strand, within EX31_RS05925 at 341.912 kb on + strand, within EX31_RS05925 at 341.912 kb on + strand, within EX31_RS05925 at 341.986 kb on + strand, within EX31_RS05925 at 341.986 kb on + strand, within EX31_RS05925 at 341.987 kb on - strand, within EX31_RS05925 at 342.004 kb on + strand, within EX31_RS05925 at 342.005 kb on - strand, within EX31_RS05925 at 342.005 kb on - strand, within EX31_RS05925 at 342.065 kb on + strand, within EX31_RS05925 at 342.065 kb on + strand, within EX31_RS05925 at 342.066 kb on - strand, within EX31_RS05925 at 342.066 kb on - strand, within EX31_RS05925 at 342.077 kb on + strand, within EX31_RS05925 at 342.078 kb on - strand, within EX31_RS05925 at 342.150 kb on + strand, within EX31_RS05925 at 342.170 kb on + strand, within EX31_RS05925 at 342.170 kb on + strand, within EX31_RS05925 at 342.200 kb on + strand, within EX31_RS05925 at 342.201 kb on - strand, within EX31_RS05925 at 342.245 kb on + strand, within EX31_RS05925 at 342.245 kb on + strand, within EX31_RS05925 at 342.245 kb on + strand, within EX31_RS05925 at 342.245 kb on + strand, within EX31_RS05925 at 342.246 kb on - strand, within EX31_RS05925 at 342.246 kb on - strand, within EX31_RS05925 at 342.246 kb on - strand, within EX31_RS05925 at 342.246 kb on - strand, within EX31_RS05925 at 342.246 kb on - strand, within EX31_RS05925 at 342.288 kb on - strand, within EX31_RS05925 at 342.396 kb on + strand, within EX31_RS05925 at 342.408 kb on - strand, within EX31_RS05925 at 342.514 kb on - strand at 342.606 kb on + strand at 342.606 kb on + strand at 342.606 kb on + strand at 342.606 kb on + strand at 342.606 kb on + strand at 342.606 kb on + strand at 342.606 kb on + strand at 342.607 kb on - strand at 342.607 kb on - strand at 342.607 kb on - strand at 342.607 kb on - strand at 342.612 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM remove 339,384 - +0.1 339,384 - +0.4 339,384 - -0.1 339,384 - +0.5 339,426 - -0.0 339,432 + +0.3 339,432 + -0.3 339,434 + +0.2 339,435 - +0.2 339,483 + +0.0 339,488 + +1.1 339,488 + +0.5 339,488 + -0.0 339,488 + -0.3 339,489 - -0.1 339,520 + -0.0 339,521 - +0.2 339,521 - -0.5 339,540 + -1.3 339,540 + -0.4 339,540 + +0.3 339,540 + +0.5 339,541 - +0.3 339,541 - +0.6 339,541 - +0.2 339,544 + -0.6 339,544 + -0.4 339,544 + -0.1 339,545 - -0.2 339,545 - +0.7 339,545 - +0.2 339,545 - -0.8 339,545 - -0.9 339,545 - +0.5 339,545 - +0.7 339,598 + -0.0 339,598 + +0.1 339,598 + +0.5 339,598 + -0.3 339,599 - +0.0 339,647 + EX31_RS05915 0.13 +0.6 339,647 + EX31_RS05915 0.13 +0.5 339,648 - EX31_RS05915 0.13 -1.0 339,753 + EX31_RS05915 0.27 +0.1 339,753 + EX31_RS05915 0.27 -0.2 339,753 + EX31_RS05915 0.27 -0.3 339,753 + EX31_RS05915 0.27 -0.6 339,753 + EX31_RS05915 0.27 -0.1 339,754 - EX31_RS05915 0.27 +0.4 339,754 - EX31_RS05915 0.27 -1.3 339,754 - EX31_RS05915 0.27 +0.0 339,754 - EX31_RS05915 0.27 +0.9 339,794 + EX31_RS05915 0.33 +0.2 339,795 - EX31_RS05915 0.33 -0.8 339,795 - EX31_RS05915 0.33 +0.1 339,795 - EX31_RS05915 0.33 -0.1 339,795 - EX31_RS05915 0.33 +0.2 339,813 + EX31_RS05915 0.35 -0.9 339,851 + EX31_RS05915 0.40 -0.2 339,851 + EX31_RS05915 0.40 +0.2 339,852 - EX31_RS05915 0.40 +0.1 339,907 + EX31_RS05915 0.48 +0.1 339,908 - EX31_RS05915 0.48 -0.4 339,908 - EX31_RS05915 0.48 -0.3 339,989 + EX31_RS05915 0.59 +0.3 339,989 + EX31_RS05915 0.59 -0.4 339,990 - EX31_RS05915 0.59 +1.2 339,990 - EX31_RS05915 0.59 -0.1 339,990 - EX31_RS05915 0.59 -0.6 339,990 - EX31_RS05915 0.59 -2.1 339,990 - EX31_RS05915 0.59 +0.8 340,107 + EX31_RS05915 0.74 -0.2 340,108 - EX31_RS05915 0.75 -0.0 340,108 - EX31_RS05915 0.75 +0.4 340,108 - EX31_RS05915 0.75 -2.0 340,192 + EX31_RS05915 0.86 +0.2 340,276 - -1.5 340,279 + -0.5 340,279 + +0.3 340,279 + -0.3 340,280 - +0.6 340,280 - -0.1 340,280 - -0.8 340,280 - +0.4 340,280 - +0.8 340,280 - -0.8 340,280 - +0.6 340,288 + +0.2 340,289 - +1.1 340,289 - -0.4 340,289 - -0.3 340,325 + +0.4 340,325 + -0.1 340,326 - +0.2 340,326 - +0.1 340,341 + +0.0 340,341 + +0.5 340,341 + +0.4 340,342 - +0.8 340,342 - -0.1 340,342 - +0.3 340,378 + -0.5 340,378 + +0.1 340,378 + +0.1 340,378 + -0.0 340,378 + -0.2 340,378 + +0.3 340,378 + -0.2 340,378 + -0.4 340,379 - +0.4 340,379 - -0.2 340,379 - +0.3 340,379 - +0.4 340,379 - +1.0 340,379 - +1.0 340,379 - +0.1 340,379 - +0.6 340,379 - -0.8 340,405 + +0.1 340,405 + -0.2 340,405 + +0.3 340,405 + -0.4 340,405 + +0.2 340,406 - +0.2 340,406 - -0.0 340,406 - -0.4 340,406 - +0.2 340,406 - +0.5 340,417 + -0.0 340,417 + +0.4 340,417 + +0.2 340,418 - -0.1 340,418 - -0.1 340,418 - -0.2 340,418 - -0.1 340,479 + EX31_RS05920 0.11 +0.2 340,480 - EX31_RS05920 0.11 -0.1 340,525 + EX31_RS05920 0.14 +0.1 340,526 - EX31_RS05920 0.14 +0.0 340,555 + EX31_RS05920 0.16 +0.3 340,717 + EX31_RS05920 0.29 +0.4 340,717 + EX31_RS05920 0.29 +0.3 340,717 + EX31_RS05920 0.29 +0.7 340,717 + EX31_RS05920 0.29 -0.7 340,717 + EX31_RS05920 0.29 -0.2 340,717 + EX31_RS05920 0.29 +0.3 340,717 + EX31_RS05920 0.29 +0.4 340,717 + EX31_RS05920 0.29 +0.1 340,717 + EX31_RS05920 0.29 -0.2 340,717 + EX31_RS05920 0.29 +0.3 340,717 + EX31_RS05920 0.29 +1.1 340,717 + EX31_RS05920 0.29 +0.5 340,718 - EX31_RS05920 0.29 +0.0 340,718 - EX31_RS05920 0.29 +0.3 340,718 - EX31_RS05920 0.29 -1.0 340,718 - EX31_RS05920 0.29 +0.4 340,718 - EX31_RS05920 0.29 +0.4 340,718 - EX31_RS05920 0.29 -0.3 340,718 - EX31_RS05920 0.29 +0.4 340,718 - EX31_RS05920 0.29 -0.3 340,718 - EX31_RS05920 0.29 +0.1 340,718 - EX31_RS05920 0.29 +0.0 340,718 - EX31_RS05920 0.29 +0.2 340,718 - EX31_RS05920 0.29 -0.5 340,718 - EX31_RS05920 0.29 -0.3 340,718 - EX31_RS05920 0.29 +0.6 340,718 - EX31_RS05920 0.29 -0.3 340,718 - EX31_RS05920 0.29 +0.3 340,718 - EX31_RS05920 0.29 +0.1 340,719 + EX31_RS05920 0.29 +0.3 340,720 - EX31_RS05920 0.29 +0.2 340,720 - EX31_RS05920 0.29 +0.3 340,720 - EX31_RS05920 0.29 -0.1 340,759 - EX31_RS05920 0.32 +1.1 340,891 - EX31_RS05920 0.42 -0.8 340,914 + EX31_RS05920 0.44 -0.3 340,914 + EX31_RS05920 0.44 +0.0 340,914 + EX31_RS05920 0.44 -0.0 340,914 + EX31_RS05920 0.44 -0.7 340,915 - EX31_RS05920 0.44 +0.8 340,915 - EX31_RS05920 0.44 -0.0 340,915 - EX31_RS05920 0.44 -0.2 341,059 + EX31_RS05920 0.55 +0.4 341,060 - EX31_RS05920 0.56 +0.5 341,060 - EX31_RS05920 0.56 -0.1 341,084 - EX31_RS05920 0.57 -0.8 341,084 - EX31_RS05920 0.57 -0.2 341,170 + EX31_RS05920 0.64 -0.4 341,171 - EX31_RS05920 0.64 +0.6 341,184 + EX31_RS05920 0.65 -0.6 341,232 + EX31_RS05920 0.69 -0.0 341,232 + EX31_RS05920 0.69 +0.1 341,232 + EX31_RS05920 0.69 -0.5 341,233 - EX31_RS05920 0.69 +0.5 341,320 + EX31_RS05920 0.76 -0.4 341,353 + EX31_RS05920 0.78 -0.6 341,353 + EX31_RS05920 0.78 +0.4 341,353 + EX31_RS05920 0.78 -0.2 341,353 + EX31_RS05920 0.78 -0.7 341,353 + EX31_RS05920 0.78 +0.0 341,353 + EX31_RS05920 0.78 -0.1 341,354 - EX31_RS05920 0.78 -0.3 341,354 - EX31_RS05920 0.78 -0.1 341,354 - EX31_RS05920 0.78 +0.1 341,354 - EX31_RS05920 0.78 +0.3 341,354 - EX31_RS05920 0.78 +0.8 341,382 + EX31_RS05920 0.80 +0.4 341,383 - EX31_RS05920 0.81 -0.6 341,496 + EX31_RS05920 0.89 +0.4 341,496 + EX31_RS05920 0.89 +0.1 341,496 + EX31_RS05920 0.89 +0.8 341,496 + EX31_RS05920 0.89 -0.4 341,496 + EX31_RS05920 0.89 -0.6 341,520 + -0.5 341,625 + -0.7 341,626 - -0.3 341,626 - +0.2 341,626 - +0.8 341,642 + +0.0 341,650 + -0.5 341,651 - -0.1 341,651 - +0.1 341,653 - +0.2 341,801 + EX31_RS05925 0.17 +1.3 341,860 - EX31_RS05925 0.23 +0.1 341,864 + EX31_RS05925 0.24 -1.3 341,912 + EX31_RS05925 0.29 -0.2 341,912 + EX31_RS05925 0.29 +1.5 341,912 + EX31_RS05925 0.29 +0.3 341,986 + EX31_RS05925 0.36 +0.6 341,986 + EX31_RS05925 0.36 -0.3 341,987 - EX31_RS05925 0.36 -0.1 342,004 + EX31_RS05925 0.38 -0.1 342,005 - EX31_RS05925 0.38 +0.7 342,005 - EX31_RS05925 0.38 -0.4 342,065 + EX31_RS05925 0.44 -0.2 342,065 + EX31_RS05925 0.44 +0.2 342,066 - EX31_RS05925 0.44 -0.5 342,066 - EX31_RS05925 0.44 +0.0 342,077 + EX31_RS05925 0.46 -0.1 342,078 - EX31_RS05925 0.46 +0.1 342,150 + EX31_RS05925 0.53 +0.3 342,170 + EX31_RS05925 0.55 -0.3 342,170 + EX31_RS05925 0.55 -0.6 342,200 + EX31_RS05925 0.58 +0.3 342,201 - EX31_RS05925 0.58 -1.2 342,245 + EX31_RS05925 0.63 -0.1 342,245 + EX31_RS05925 0.63 +0.5 342,245 + EX31_RS05925 0.63 -0.0 342,245 + EX31_RS05925 0.63 +0.3 342,246 - EX31_RS05925 0.63 +0.1 342,246 - EX31_RS05925 0.63 +0.3 342,246 - EX31_RS05925 0.63 +0.5 342,246 - EX31_RS05925 0.63 -0.4 342,246 - EX31_RS05925 0.63 +0.5 342,288 - EX31_RS05925 0.67 +0.3 342,396 + EX31_RS05925 0.78 +0.1 342,408 - EX31_RS05925 0.79 +0.0 342,514 - -1.0 342,606 + -0.1 342,606 + +0.7 342,606 + +0.0 342,606 + -0.0 342,606 + +0.0 342,606 + -0.2 342,606 + +0.1 342,607 - -1.7 342,607 - +0.5 342,607 - +0.5 342,607 - +0.7 342,612 - -0.6
Or see this region's nucleotide sequence