Experiment: NL-CCM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03365 and EX31_RS03370 are separated by 210 nucleotides EX31_RS03370 and EX31_RS03375 are separated by 214 nucleotides
EX31_RS03365: EX31_RS03365 - multicopper oxidase CueO, at 160,334 to 161,938
_RS03365
EX31_RS03370: EX31_RS03370 - YacC family pilotin-like protein, at 162,149 to 162,496
_RS03370
EX31_RS03375: EX31_RS03375 - polyamine aminopropyltransferase, at 162,711 to 163,586
_RS03375
Position (kb) 162
163 Strain fitness (log2 ratio) -2
-1
0
1
2 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.172 kb on + strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.173 kb on - strand, within EX31_RS03365 at 161.218 kb on + strand, within EX31_RS03365 at 161.218 kb on + strand, within EX31_RS03365 at 161.218 kb on + strand, within EX31_RS03365 at 161.218 kb on + strand, within EX31_RS03365 at 161.219 kb on - strand, within EX31_RS03365 at 161.219 kb on - strand, within EX31_RS03365 at 161.219 kb on - strand, within EX31_RS03365 at 161.219 kb on - strand, within EX31_RS03365 at 161.219 kb on - strand, within EX31_RS03365 at 161.219 kb on - strand, within EX31_RS03365 at 161.232 kb on - strand, within EX31_RS03365 at 161.274 kb on + strand, within EX31_RS03365 at 161.374 kb on + strand, within EX31_RS03365 at 161.375 kb on - strand, within EX31_RS03365 at 161.395 kb on + strand, within EX31_RS03365 at 161.396 kb on - strand, within EX31_RS03365 at 161.396 kb on - strand, within EX31_RS03365 at 161.729 kb on + strand, within EX31_RS03365 at 161.730 kb on - strand, within EX31_RS03365 at 161.730 kb on - strand, within EX31_RS03365 at 161.783 kb on + strand at 161.783 kb on + strand at 161.784 kb on - strand at 161.784 kb on - strand at 161.784 kb on - strand at 161.795 kb on - strand at 161.795 kb on - strand at 161.887 kb on + strand at 161.991 kb on - strand at 161.991 kb on - strand at 161.993 kb on + strand at 161.993 kb on + strand at 161.993 kb on + strand at 161.993 kb on + strand at 161.993 kb on + strand at 161.993 kb on + strand at 161.993 kb on + strand at 161.993 kb on + strand at 161.993 kb on + strand at 161.993 kb on + strand at 161.994 kb on - strand at 161.994 kb on - strand at 161.994 kb on - strand at 161.994 kb on - strand at 161.994 kb on - strand at 161.996 kb on + strand at 161.997 kb on - strand at 161.997 kb on - strand at 161.997 kb on - strand at 162.006 kb on + strand at 162.006 kb on + strand at 162.007 kb on - strand at 162.018 kb on + strand at 162.018 kb on + strand at 162.076 kb on - strand at 162.076 kb on - strand at 162.076 kb on - strand at 162.076 kb on - strand at 162.080 kb on + strand at 162.092 kb on - strand at 162.092 kb on - strand at 162.129 kb on - strand at 162.129 kb on - strand at 162.174 kb on + strand at 162.174 kb on + strand at 162.174 kb on + strand at 162.174 kb on + strand at 162.175 kb on - strand at 162.175 kb on - strand at 162.177 kb on + strand at 162.177 kb on + strand at 162.177 kb on + strand at 162.178 kb on - strand at 162.178 kb on - strand at 162.178 kb on - strand at 162.178 kb on - strand at 162.266 kb on + strand, within EX31_RS03370 at 162.287 kb on + strand, within EX31_RS03370 at 162.365 kb on + strand, within EX31_RS03370 at 162.365 kb on + strand, within EX31_RS03370 at 162.365 kb on + strand, within EX31_RS03370 at 162.365 kb on + strand, within EX31_RS03370 at 162.366 kb on - strand, within EX31_RS03370 at 162.366 kb on - strand, within EX31_RS03370 at 162.366 kb on - strand, within EX31_RS03370 at 162.366 kb on - strand, within EX31_RS03370 at 162.366 kb on - strand, within EX31_RS03370 at 162.366 kb on - strand, within EX31_RS03370 at 162.366 kb on - strand, within EX31_RS03370 at 162.366 kb on - strand, within EX31_RS03370 at 162.376 kb on + strand, within EX31_RS03370 at 162.376 kb on + strand, within EX31_RS03370 at 162.376 kb on + strand, within EX31_RS03370 at 162.433 kb on + strand, within EX31_RS03370 at 162.448 kb on + strand, within EX31_RS03370 at 162.448 kb on + strand, within EX31_RS03370 at 162.448 kb on + strand, within EX31_RS03370 at 162.449 kb on - strand, within EX31_RS03370 at 162.449 kb on - strand, within EX31_RS03370 at 162.486 kb on - strand at 162.486 kb on - strand at 162.600 kb on + strand at 162.600 kb on + strand at 162.601 kb on - strand at 162.601 kb on - strand at 162.601 kb on - strand at 162.606 kb on + strand at 162.606 kb on + strand at 162.607 kb on - strand at 162.607 kb on - strand at 162.611 kb on + strand at 162.611 kb on + strand at 162.611 kb on + strand at 162.611 kb on + strand at 162.611 kb on + strand at 162.611 kb on + strand at 162.611 kb on + strand at 162.611 kb on + strand at 162.611 kb on + strand at 162.612 kb on - strand at 162.612 kb on - strand at 162.612 kb on - strand at 162.612 kb on - strand at 162.612 kb on - strand at 162.612 kb on - strand at 162.612 kb on - strand at 162.612 kb on - strand at 162.612 kb on - strand at 162.612 kb on - strand at 162.612 kb on - strand at 162.612 kb on - strand at 162.612 kb on - strand at 162.656 kb on + strand at 162.656 kb on + strand at 162.656 kb on + strand at 162.657 kb on - strand at 162.657 kb on - strand at 162.657 kb on - strand at 162.657 kb on - strand at 162.660 kb on + strand at 162.660 kb on + strand at 162.660 kb on + strand at 162.661 kb on - strand at 162.740 kb on - strand at 162.740 kb on - strand at 162.744 kb on + strand at 162.744 kb on + strand at 162.744 kb on + strand at 162.744 kb on + strand at 162.744 kb on + strand at 162.744 kb on + strand at 162.745 kb on - strand at 162.774 kb on + strand at 162.796 kb on + strand at 162.796 kb on + strand at 162.797 kb on - strand at 162.798 kb on + strand at 162.798 kb on + strand at 163.080 kb on + strand, within EX31_RS03375 at 163.080 kb on + strand, within EX31_RS03375 at 163.095 kb on - strand, within EX31_RS03375 at 163.095 kb on - strand, within EX31_RS03375 at 163.107 kb on + strand, within EX31_RS03375 at 163.108 kb on - strand, within EX31_RS03375 at 163.108 kb on - strand, within EX31_RS03375 at 163.233 kb on - strand, within EX31_RS03375 at 163.245 kb on + strand, within EX31_RS03375 at 163.245 kb on + strand, within EX31_RS03375 at 163.246 kb on - strand, within EX31_RS03375 at 163.246 kb on - strand, within EX31_RS03375 at 163.357 kb on - strand, within EX31_RS03375 at 163.398 kb on + strand, within EX31_RS03375 at 163.398 kb on + strand, within EX31_RS03375 at 163.398 kb on + strand, within EX31_RS03375 at 163.399 kb on - strand, within EX31_RS03375 at 163.399 kb on - strand, within EX31_RS03375 at 163.402 kb on - strand, within EX31_RS03375 at 163.402 kb on - strand, within EX31_RS03375
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM remove 161,172 + EX31_RS03365 0.52 +0.1 161,172 + EX31_RS03365 0.52 +0.4 161,172 + EX31_RS03365 0.52 +0.5 161,172 + EX31_RS03365 0.52 -0.1 161,172 + EX31_RS03365 0.52 +1.2 161,172 + EX31_RS03365 0.52 -0.3 161,172 + EX31_RS03365 0.52 +0.5 161,172 + EX31_RS03365 0.52 +0.0 161,172 + EX31_RS03365 0.52 +0.0 161,172 + EX31_RS03365 0.52 -1.2 161,172 + EX31_RS03365 0.52 +0.6 161,172 + EX31_RS03365 0.52 -0.6 161,172 + EX31_RS03365 0.52 +0.3 161,172 + EX31_RS03365 0.52 -0.1 161,172 + EX31_RS03365 0.52 +0.5 161,172 + EX31_RS03365 0.52 +0.1 161,172 + EX31_RS03365 0.52 -0.2 161,173 - EX31_RS03365 0.52 +0.5 161,173 - EX31_RS03365 0.52 +0.3 161,173 - EX31_RS03365 0.52 +0.5 161,173 - EX31_RS03365 0.52 +0.4 161,173 - EX31_RS03365 0.52 -0.4 161,173 - EX31_RS03365 0.52 +0.2 161,173 - EX31_RS03365 0.52 -0.3 161,173 - EX31_RS03365 0.52 -0.1 161,173 - EX31_RS03365 0.52 -0.1 161,173 - EX31_RS03365 0.52 -0.0 161,173 - EX31_RS03365 0.52 +0.1 161,173 - EX31_RS03365 0.52 -0.2 161,173 - EX31_RS03365 0.52 -1.4 161,173 - EX31_RS03365 0.52 -0.5 161,173 - EX31_RS03365 0.52 -1.1 161,173 - EX31_RS03365 0.52 -2.0 161,173 - EX31_RS03365 0.52 -0.4 161,173 - EX31_RS03365 0.52 +1.6 161,173 - EX31_RS03365 0.52 -0.7 161,173 - EX31_RS03365 0.52 +0.7 161,218 + EX31_RS03365 0.55 +0.3 161,218 + EX31_RS03365 0.55 -1.1 161,218 + EX31_RS03365 0.55 -0.1 161,218 + EX31_RS03365 0.55 +0.2 161,219 - EX31_RS03365 0.55 +0.3 161,219 - EX31_RS03365 0.55 -1.4 161,219 - EX31_RS03365 0.55 +0.0 161,219 - EX31_RS03365 0.55 +0.4 161,219 - EX31_RS03365 0.55 +0.5 161,219 - EX31_RS03365 0.55 +0.2 161,232 - EX31_RS03365 0.56 -0.8 161,274 + EX31_RS03365 0.59 +0.2 161,374 + EX31_RS03365 0.65 +0.7 161,375 - EX31_RS03365 0.65 -0.5 161,395 + EX31_RS03365 0.66 -0.0 161,396 - EX31_RS03365 0.66 -0.5 161,396 - EX31_RS03365 0.66 +0.4 161,729 + EX31_RS03365 0.87 -0.1 161,730 - EX31_RS03365 0.87 +0.2 161,730 - EX31_RS03365 0.87 -0.1 161,783 + +0.9 161,783 + -0.1 161,784 - -0.6 161,784 - +0.1 161,784 - -0.7 161,795 - -1.0 161,795 - +0.4 161,887 + -1.0 161,991 - -0.0 161,991 - +0.5 161,993 + -1.2 161,993 + -0.2 161,993 + -0.7 161,993 + -0.4 161,993 + -0.8 161,993 + -0.4 161,993 + -0.6 161,993 + +1.2 161,993 + +0.1 161,993 + -0.7 161,994 - +0.2 161,994 - -0.3 161,994 - -0.2 161,994 - -0.3 161,994 - -0.9 161,996 + +1.4 161,997 - +0.5 161,997 - -0.5 161,997 - +0.8 162,006 + -0.2 162,006 + +0.1 162,007 - +0.1 162,018 + +0.5 162,018 + +0.3 162,076 - +0.3 162,076 - +0.4 162,076 - -0.2 162,076 - -0.5 162,080 + -0.6 162,092 - +0.1 162,092 - +0.7 162,129 - +0.3 162,129 - -0.1 162,174 + +1.2 162,174 + -0.1 162,174 + +0.7 162,174 + +0.2 162,175 - +0.6 162,175 - -0.4 162,177 + -0.6 162,177 + +0.3 162,177 + -0.9 162,178 - +0.5 162,178 - -0.0 162,178 - -0.7 162,178 - -0.4 162,266 + EX31_RS03370 0.34 -0.5 162,287 + EX31_RS03370 0.40 +0.8 162,365 + EX31_RS03370 0.62 +0.0 162,365 + EX31_RS03370 0.62 -0.3 162,365 + EX31_RS03370 0.62 -0.3 162,365 + EX31_RS03370 0.62 -0.5 162,366 - EX31_RS03370 0.62 +0.1 162,366 - EX31_RS03370 0.62 -0.7 162,366 - EX31_RS03370 0.62 -0.8 162,366 - EX31_RS03370 0.62 +1.0 162,366 - EX31_RS03370 0.62 +0.3 162,366 - EX31_RS03370 0.62 -0.2 162,366 - EX31_RS03370 0.62 -0.0 162,366 - EX31_RS03370 0.62 -0.4 162,376 + EX31_RS03370 0.65 -1.1 162,376 + EX31_RS03370 0.65 -0.4 162,376 + EX31_RS03370 0.65 -0.9 162,433 + EX31_RS03370 0.82 -0.5 162,448 + EX31_RS03370 0.86 -0.9 162,448 + EX31_RS03370 0.86 -0.9 162,448 + EX31_RS03370 0.86 +0.5 162,449 - EX31_RS03370 0.86 -0.1 162,449 - EX31_RS03370 0.86 +0.5 162,486 - +0.1 162,486 - -0.4 162,600 + -1.0 162,600 + +2.0 162,601 - -0.5 162,601 - +0.9 162,601 - -0.7 162,606 + -0.5 162,606 + +0.1 162,607 - -0.5 162,607 - +0.1 162,611 + -0.0 162,611 + -0.1 162,611 + -0.3 162,611 + -0.2 162,611 + +0.3 162,611 + +0.0 162,611 + +0.3 162,611 + +0.5 162,611 + +0.2 162,612 - -0.0 162,612 - -0.2 162,612 - +0.6 162,612 - +0.9 162,612 - -1.3 162,612 - +1.0 162,612 - +0.4 162,612 - +0.4 162,612 - -1.6 162,612 - -0.8 162,612 - -0.2 162,612 - +0.0 162,612 - -0.5 162,656 + -0.2 162,656 + +0.4 162,656 + -0.3 162,657 - +0.3 162,657 - +0.1 162,657 - -0.7 162,657 - +0.4 162,660 + -0.4 162,660 + -0.0 162,660 + -0.9 162,661 - +0.4 162,740 - +0.6 162,740 - +0.1 162,744 + +0.3 162,744 + -0.3 162,744 + -0.2 162,744 + -0.2 162,744 + +0.4 162,744 + -0.2 162,745 - -1.4 162,774 + -0.1 162,796 + +0.0 162,796 + -0.2 162,797 - +0.3 162,798 + -0.3 162,798 + -0.2 163,080 + EX31_RS03375 0.42 -0.0 163,080 + EX31_RS03375 0.42 +1.8 163,095 - EX31_RS03375 0.44 +0.0 163,095 - EX31_RS03375 0.44 +0.3 163,107 + EX31_RS03375 0.45 -0.1 163,108 - EX31_RS03375 0.45 +0.2 163,108 - EX31_RS03375 0.45 +0.6 163,233 - EX31_RS03375 0.60 +0.2 163,245 + EX31_RS03375 0.61 +0.0 163,245 + EX31_RS03375 0.61 -0.5 163,246 - EX31_RS03375 0.61 +0.8 163,246 - EX31_RS03375 0.61 -0.4 163,357 - EX31_RS03375 0.74 -0.1 163,398 + EX31_RS03375 0.78 +0.2 163,398 + EX31_RS03375 0.78 +0.9 163,398 + EX31_RS03375 0.78 +0.0 163,399 - EX31_RS03375 0.79 +0.4 163,399 - EX31_RS03375 0.79 -0.3 163,402 - EX31_RS03375 0.79 -0.3 163,402 - EX31_RS03375 0.79 +0.0
Or see this region's nucleotide sequence