Strain Fitness in Rahnella sp. WP5 around EX31_RS02605

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02600 and EX31_RS02605 are separated by 140 nucleotidesEX31_RS02605 and EX31_RS02610 are separated by 397 nucleotides EX31_RS02600: EX31_RS02600 - ABC transporter substrate-binding protein, at 551,612 to 553,171 _RS02600 EX31_RS02605: EX31_RS02605 - LysR family transcriptional regulator, at 553,312 to 554,199 _RS02605 EX31_RS02610: EX31_RS02610 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 554,597 to 557,074 _RS02610 Position (kb) 553 554 555Strain fitness (log2 ratio) -2 -1 0 1 2 3at 552.365 kb on + strand, within EX31_RS02600at 552.366 kb on - strand, within EX31_RS02600at 552.366 kb on - strand, within EX31_RS02600at 552.369 kb on + strand, within EX31_RS02600at 552.369 kb on + strand, within EX31_RS02600at 552.376 kb on + strand, within EX31_RS02600at 552.377 kb on - strand, within EX31_RS02600at 552.460 kb on + strand, within EX31_RS02600at 552.461 kb on - strand, within EX31_RS02600at 552.461 kb on - strand, within EX31_RS02600at 552.530 kb on - strand, within EX31_RS02600at 552.688 kb on + strand, within EX31_RS02600at 552.689 kb on - strand, within EX31_RS02600at 552.689 kb on - strand, within EX31_RS02600at 552.689 kb on - strand, within EX31_RS02600at 552.701 kb on + strand, within EX31_RS02600at 552.702 kb on - strand, within EX31_RS02600at 552.709 kb on + strand, within EX31_RS02600at 552.709 kb on + strand, within EX31_RS02600at 552.710 kb on - strand, within EX31_RS02600at 552.710 kb on - strand, within EX31_RS02600at 552.710 kb on - strand, within EX31_RS02600at 552.710 kb on - strand, within EX31_RS02600at 552.713 kb on + strand, within EX31_RS02600at 552.713 kb on + strand, within EX31_RS02600at 552.713 kb on + strand, within EX31_RS02600at 552.713 kb on + strand, within EX31_RS02600at 552.714 kb on - strand, within EX31_RS02600at 552.714 kb on - strand, within EX31_RS02600at 552.716 kb on + strand, within EX31_RS02600at 552.716 kb on + strand, within EX31_RS02600at 552.717 kb on - strand, within EX31_RS02600at 552.793 kb on - strand, within EX31_RS02600at 552.793 kb on - strand, within EX31_RS02600at 552.800 kb on - strand, within EX31_RS02600at 552.800 kb on - strand, within EX31_RS02600at 552.802 kb on - strand, within EX31_RS02600at 552.966 kb on - strand, within EX31_RS02600at 553.004 kb on + strand, within EX31_RS02600at 553.004 kb on + strand, within EX31_RS02600at 553.005 kb on - strand, within EX31_RS02600at 553.041 kb on + strandat 553.057 kb on + strandat 553.087 kb on + strandat 553.088 kb on - strandat 553.088 kb on - strandat 553.088 kb on - strandat 553.104 kb on - strandat 553.177 kb on + strandat 553.177 kb on + strandat 553.189 kb on - strandat 553.189 kb on - strandat 553.189 kb on - strandat 553.189 kb on - strandat 553.213 kb on - strandat 553.223 kb on - strandat 553.235 kb on - strandat 553.282 kb on - strandat 553.311 kb on + strandat 553.334 kb on + strandat 553.335 kb on - strandat 553.531 kb on + strand, within EX31_RS02605at 553.531 kb on + strand, within EX31_RS02605at 553.548 kb on + strand, within EX31_RS02605at 553.548 kb on + strand, within EX31_RS02605at 553.548 kb on + strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.549 kb on - strand, within EX31_RS02605at 553.557 kb on + strand, within EX31_RS02605at 553.571 kb on + strand, within EX31_RS02605at 553.572 kb on - strand, within EX31_RS02605at 553.572 kb on - strand, within EX31_RS02605at 553.572 kb on - strand, within EX31_RS02605at 553.572 kb on - strand, within EX31_RS02605at 553.665 kb on + strand, within EX31_RS02605at 553.674 kb on + strand, within EX31_RS02605at 553.675 kb on - strand, within EX31_RS02605at 553.890 kb on + strand, within EX31_RS02605at 553.893 kb on + strand, within EX31_RS02605at 553.893 kb on + strand, within EX31_RS02605at 553.894 kb on - strand, within EX31_RS02605at 553.894 kb on - strand, within EX31_RS02605at 553.894 kb on - strand, within EX31_RS02605at 553.896 kb on - strand, within EX31_RS02605at 553.955 kb on + strand, within EX31_RS02605at 553.955 kb on + strand, within EX31_RS02605at 553.955 kb on + strand, within EX31_RS02605at 553.955 kb on + strand, within EX31_RS02605at 553.956 kb on - strand, within EX31_RS02605at 553.956 kb on - strand, within EX31_RS02605at 553.956 kb on - strand, within EX31_RS02605at 553.956 kb on - strand, within EX31_RS02605at 553.956 kb on - strand, within EX31_RS02605at 553.957 kb on + strand, within EX31_RS02605at 553.957 kb on + strand, within EX31_RS02605at 553.957 kb on + strand, within EX31_RS02605at 553.957 kb on + strand, within EX31_RS02605at 553.957 kb on + strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.958 kb on - strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.959 kb on + strand, within EX31_RS02605at 553.960 kb on - strand, within EX31_RS02605at 553.960 kb on - strand, within EX31_RS02605at 554.157 kb on + strandat 554.157 kb on + strandat 554.158 kb on - strandat 554.180 kb on + strandat 554.180 kb on + strandat 554.180 kb on + strandat 554.191 kb on + strandat 554.426 kb on + strandat 554.473 kb on + strandat 554.473 kb on + strandat 554.525 kb on + strandat 554.526 kb on - strandat 554.526 kb on - strandat 554.557 kb on + strandat 554.557 kb on + strandat 554.557 kb on + strandat 554.557 kb on + strandat 554.557 kb on + strandat 554.558 kb on - strandat 554.558 kb on - strandat 554.558 kb on - strandat 554.564 kb on + strandat 554.564 kb on + strandat 554.564 kb on + strandat 554.571 kb on + strandat 554.611 kb on + strandat 554.690 kb on + strandat 554.690 kb on + strandat 554.691 kb on - strandat 554.691 kb on - strandat 554.703 kb on + strandat 554.703 kb on + strandat 554.704 kb on - strandat 554.717 kb on + strandat 554.774 kb on - strandat 554.818 kb on + strandat 554.818 kb on + strandat 554.822 kb on - strandat 554.953 kb on + strand, within EX31_RS02610at 555.016 kb on + strand, within EX31_RS02610at 555.016 kb on + strand, within EX31_RS02610at 555.017 kb on - strand, within EX31_RS02610at 555.079 kb on + strand, within EX31_RS02610at 555.079 kb on + strand, within EX31_RS02610at 555.080 kb on - strand, within EX31_RS02610at 555.080 kb on - strand, within EX31_RS02610

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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552,365 + EX31_RS02600 0.48 +0.5
552,366 - EX31_RS02600 0.48 -0.0
552,366 - EX31_RS02600 0.48 +0.3
552,369 + EX31_RS02600 0.49 -0.6
552,369 + EX31_RS02600 0.49 +0.1
552,376 + EX31_RS02600 0.49 -0.3
552,377 - EX31_RS02600 0.49 +0.8
552,460 + EX31_RS02600 0.54 -0.6
552,461 - EX31_RS02600 0.54 -0.3
552,461 - EX31_RS02600 0.54 +0.5
552,530 - EX31_RS02600 0.59 +0.1
552,688 + EX31_RS02600 0.69 -0.4
552,689 - EX31_RS02600 0.69 +0.2
552,689 - EX31_RS02600 0.69 +0.1
552,689 - EX31_RS02600 0.69 +0.1
552,701 + EX31_RS02600 0.70 +0.4
552,702 - EX31_RS02600 0.70 +0.3
552,709 + EX31_RS02600 0.70 +1.0
552,709 + EX31_RS02600 0.70 -0.1
552,710 - EX31_RS02600 0.70 +0.7
552,710 - EX31_RS02600 0.70 +0.5
552,710 - EX31_RS02600 0.70 -0.4
552,710 - EX31_RS02600 0.70 +1.1
552,713 + EX31_RS02600 0.71 +0.4
552,713 + EX31_RS02600 0.71 -0.1
552,713 + EX31_RS02600 0.71 +0.3
552,713 + EX31_RS02600 0.71 -0.0
552,714 - EX31_RS02600 0.71 +1.4
552,714 - EX31_RS02600 0.71 +2.2
552,716 + EX31_RS02600 0.71 +0.4
552,716 + EX31_RS02600 0.71 -0.4
552,717 - EX31_RS02600 0.71 -0.1
552,793 - EX31_RS02600 0.76 -0.2
552,793 - EX31_RS02600 0.76 +0.4
552,800 - EX31_RS02600 0.76 -0.1
552,800 - EX31_RS02600 0.76 +0.4
552,802 - EX31_RS02600 0.76 -0.1
552,966 - EX31_RS02600 0.87 +0.6
553,004 + EX31_RS02600 0.89 +0.9
553,004 + EX31_RS02600 0.89 -2.2
553,005 - EX31_RS02600 0.89 +1.2
553,041 + -2.0
553,057 + -0.2
553,087 + -0.5
553,088 - -2.1
553,088 - +1.0
553,088 - +3.0
553,104 - -0.5
553,177 + -0.1
553,177 + +0.9
553,189 - +0.2
553,189 - +0.1
553,189 - -1.2
553,189 - +1.2
553,213 - +0.7
553,223 - -0.1
553,235 - +0.9
553,282 - +0.9
553,311 + +0.3
553,334 + -0.1
553,335 - +0.9
553,531 + EX31_RS02605 0.25 +0.4
553,531 + EX31_RS02605 0.25 +0.2
553,548 + EX31_RS02605 0.27 -0.7
553,548 + EX31_RS02605 0.27 +0.2
553,548 + EX31_RS02605 0.27 +0.3
553,549 - EX31_RS02605 0.27 +0.4
553,549 - EX31_RS02605 0.27 -0.2
553,549 - EX31_RS02605 0.27 -0.4
553,549 - EX31_RS02605 0.27 +0.0
553,549 - EX31_RS02605 0.27 +0.8
553,549 - EX31_RS02605 0.27 -1.0
553,549 - EX31_RS02605 0.27 +0.3
553,549 - EX31_RS02605 0.27 +1.6
553,557 + EX31_RS02605 0.28 -0.1
553,571 + EX31_RS02605 0.29 +0.3
553,572 - EX31_RS02605 0.29 +1.0
553,572 - EX31_RS02605 0.29 -0.2
553,572 - EX31_RS02605 0.29 -1.4
553,572 - EX31_RS02605 0.29 +0.0
553,665 + EX31_RS02605 0.40 +0.2
553,674 + EX31_RS02605 0.41 -1.4
553,675 - EX31_RS02605 0.41 +0.6
553,890 + EX31_RS02605 0.65 -0.4
553,893 + EX31_RS02605 0.65 -0.4
553,893 + EX31_RS02605 0.65 -0.5
553,894 - EX31_RS02605 0.66 -1.2
553,894 - EX31_RS02605 0.66 +0.8
553,894 - EX31_RS02605 0.66 -0.6
553,896 - EX31_RS02605 0.66 +0.0
553,955 + EX31_RS02605 0.72 -0.2
553,955 + EX31_RS02605 0.72 -0.0
553,955 + EX31_RS02605 0.72 +0.0
553,955 + EX31_RS02605 0.72 +0.0
553,956 - EX31_RS02605 0.73 -0.2
553,956 - EX31_RS02605 0.73 -0.1
553,956 - EX31_RS02605 0.73 +0.2
553,956 - EX31_RS02605 0.73 -0.9
553,956 - EX31_RS02605 0.73 -0.3
553,957 + EX31_RS02605 0.73 +0.1
553,957 + EX31_RS02605 0.73 +0.5
553,957 + EX31_RS02605 0.73 +0.5
553,957 + EX31_RS02605 0.73 -0.1
553,957 + EX31_RS02605 0.73 +0.3
553,958 - EX31_RS02605 0.73 +1.9
553,958 - EX31_RS02605 0.73 +0.4
553,958 - EX31_RS02605 0.73 +0.4
553,958 - EX31_RS02605 0.73 +1.7
553,958 - EX31_RS02605 0.73 +0.4
553,958 - EX31_RS02605 0.73 +0.2
553,958 - EX31_RS02605 0.73 -0.2
553,958 - EX31_RS02605 0.73 -0.4
553,958 - EX31_RS02605 0.73 +0.7
553,959 + EX31_RS02605 0.73 -1.0
553,959 + EX31_RS02605 0.73 -1.3
553,959 + EX31_RS02605 0.73 -0.1
553,959 + EX31_RS02605 0.73 -0.2
553,959 + EX31_RS02605 0.73 +1.3
553,959 + EX31_RS02605 0.73 +0.1
553,959 + EX31_RS02605 0.73 -1.1
553,959 + EX31_RS02605 0.73 -1.1
553,959 + EX31_RS02605 0.73 +0.1
553,959 + EX31_RS02605 0.73 -0.7
553,959 + EX31_RS02605 0.73 -0.6
553,960 - EX31_RS02605 0.73 +1.3
553,960 - EX31_RS02605 0.73 -0.8
554,157 + -0.4
554,157 + -2.1
554,158 - +0.6
554,180 + +1.0
554,180 + -1.0
554,180 + +0.2
554,191 + +0.3
554,426 + +0.5
554,473 + +0.3
554,473 + -0.4
554,525 + -0.7
554,526 - +0.7
554,526 - +0.5
554,557 + +1.0
554,557 + -0.8
554,557 + -1.4
554,557 + +0.2
554,557 + +0.5
554,558 - -0.2
554,558 - +0.1
554,558 - -0.7
554,564 + -0.8
554,564 + -0.6
554,564 + +0.6
554,571 + +0.5
554,611 + -0.2
554,690 + -1.0
554,690 + +0.7
554,691 - +0.2
554,691 - -0.5
554,703 + +0.7
554,703 + -0.1
554,704 - -0.0
554,717 + -0.5
554,774 - +0.3
554,818 + +1.7
554,818 + +0.8
554,822 - +0.6
554,953 + EX31_RS02610 0.14 -0.3
555,016 + EX31_RS02610 0.17 -0.6
555,016 + EX31_RS02610 0.17 +0.0
555,017 - EX31_RS02610 0.17 +0.9
555,079 + EX31_RS02610 0.19 -1.3
555,079 + EX31_RS02610 0.19 -0.2
555,080 - EX31_RS02610 0.19 -0.4
555,080 - EX31_RS02610 0.19 -2.5

Or see this region's nucleotide sequence