Strain Fitness in Rahnella sp. WP5 around EX31_RS19260

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19255 and EX31_RS19260 are separated by 17 nucleotidesEX31_RS19260 and EX31_RS19265 are separated by 50 nucleotides EX31_RS19255: EX31_RS19255 - HlyD family efflux transporter periplasmic adaptor subunit, at 450,925 to 452,094 _RS19255 EX31_RS19260: EX31_RS19260 - type I secretion system permease/ATPase, at 452,112 to 454,289 _RS19260 EX31_RS19265: EX31_RS19265 - TolC family outer membrane protein, at 454,340 to 455,716 _RS19265 Position (kb) 452 453 454 455Strain fitness (log2 ratio) -1 0 1 2at 451.135 kb on - strand, within EX31_RS19255at 451.175 kb on + strand, within EX31_RS19255at 451.176 kb on - strand, within EX31_RS19255at 451.190 kb on + strand, within EX31_RS19255at 451.190 kb on + strand, within EX31_RS19255at 451.190 kb on + strand, within EX31_RS19255at 451.190 kb on + strand, within EX31_RS19255at 451.191 kb on - strand, within EX31_RS19255at 451.191 kb on - strand, within EX31_RS19255at 451.191 kb on - strand, within EX31_RS19255at 451.191 kb on - strand, within EX31_RS19255at 451.232 kb on + strand, within EX31_RS19255at 451.232 kb on + strand, within EX31_RS19255at 451.232 kb on + strand, within EX31_RS19255at 451.232 kb on + strand, within EX31_RS19255at 451.233 kb on - strand, within EX31_RS19255at 451.233 kb on - strand, within EX31_RS19255at 451.233 kb on - strand, within EX31_RS19255at 451.233 kb on - strand, within EX31_RS19255at 451.251 kb on + strand, within EX31_RS19255at 451.354 kb on - strand, within EX31_RS19255at 451.376 kb on + strand, within EX31_RS19255at 451.488 kb on + strand, within EX31_RS19255at 451.633 kb on - strand, within EX31_RS19255at 451.659 kb on + strand, within EX31_RS19255at 451.660 kb on - strand, within EX31_RS19255at 451.666 kb on + strand, within EX31_RS19255at 451.670 kb on + strand, within EX31_RS19255at 451.670 kb on + strand, within EX31_RS19255at 451.670 kb on + strand, within EX31_RS19255at 451.670 kb on + strand, within EX31_RS19255at 451.671 kb on - strand, within EX31_RS19255at 451.671 kb on - strand, within EX31_RS19255at 451.671 kb on - strand, within EX31_RS19255at 451.671 kb on - strand, within EX31_RS19255at 451.671 kb on - strand, within EX31_RS19255at 451.671 kb on - strand, within EX31_RS19255at 451.671 kb on - strand, within EX31_RS19255at 451.671 kb on - strand, within EX31_RS19255at 451.671 kb on - strand, within EX31_RS19255at 451.672 kb on + strand, within EX31_RS19255at 451.673 kb on - strand, within EX31_RS19255at 451.673 kb on - strand, within EX31_RS19255at 451.673 kb on - strand, within EX31_RS19255at 451.673 kb on - strand, within EX31_RS19255at 451.673 kb on - strand, within EX31_RS19255at 451.673 kb on - strand, within EX31_RS19255at 451.673 kb on - strand, within EX31_RS19255at 451.777 kb on + strand, within EX31_RS19255at 451.777 kb on + strand, within EX31_RS19255at 451.778 kb on - strand, within EX31_RS19255at 451.778 kb on - strand, within EX31_RS19255at 451.778 kb on - strand, within EX31_RS19255at 451.778 kb on - strand, within EX31_RS19255at 451.966 kb on + strand, within EX31_RS19255at 451.966 kb on + strand, within EX31_RS19255at 451.967 kb on - strand, within EX31_RS19255at 452.133 kb on - strandat 452.175 kb on + strandat 452.309 kb on + strandat 452.309 kb on + strandat 452.309 kb on + strandat 452.309 kb on + strandat 452.309 kb on + strandat 452.309 kb on + strandat 452.309 kb on + strandat 452.309 kb on + strandat 452.310 kb on - strandat 452.310 kb on - strandat 452.310 kb on - strandat 452.310 kb on - strandat 452.310 kb on - strandat 452.310 kb on - strandat 452.310 kb on - strandat 452.310 kb on - strandat 452.310 kb on - strandat 452.313 kb on + strandat 452.313 kb on + strandat 452.313 kb on + strandat 452.314 kb on - strandat 452.314 kb on - strandat 452.314 kb on - strandat 452.314 kb on - strandat 452.314 kb on - strandat 452.314 kb on - strandat 452.314 kb on - strandat 452.314 kb on - strandat 452.314 kb on - strandat 452.329 kb on + strandat 452.330 kb on - strand, within EX31_RS19260at 452.516 kb on + strand, within EX31_RS19260at 452.516 kb on + strand, within EX31_RS19260at 452.516 kb on + strand, within EX31_RS19260at 452.517 kb on - strand, within EX31_RS19260at 452.517 kb on - strand, within EX31_RS19260at 452.517 kb on - strand, within EX31_RS19260at 452.654 kb on + strand, within EX31_RS19260at 452.654 kb on + strand, within EX31_RS19260at 452.830 kb on + strand, within EX31_RS19260at 452.831 kb on - strand, within EX31_RS19260at 452.831 kb on - strand, within EX31_RS19260at 452.831 kb on - strand, within EX31_RS19260at 452.831 kb on - strand, within EX31_RS19260at 452.831 kb on - strand, within EX31_RS19260at 452.836 kb on + strand, within EX31_RS19260at 452.836 kb on + strand, within EX31_RS19260at 452.836 kb on + strand, within EX31_RS19260at 452.837 kb on - strand, within EX31_RS19260at 452.837 kb on - strand, within EX31_RS19260at 452.837 kb on - strand, within EX31_RS19260at 452.837 kb on - strand, within EX31_RS19260at 452.837 kb on - strand, within EX31_RS19260at 452.847 kb on - strand, within EX31_RS19260at 453.073 kb on + strand, within EX31_RS19260at 453.074 kb on - strand, within EX31_RS19260at 453.074 kb on - strand, within EX31_RS19260at 453.101 kb on - strand, within EX31_RS19260at 453.101 kb on - strand, within EX31_RS19260at 453.215 kb on - strand, within EX31_RS19260at 453.299 kb on + strand, within EX31_RS19260at 453.300 kb on - strand, within EX31_RS19260at 453.513 kb on - strand, within EX31_RS19260at 453.513 kb on - strand, within EX31_RS19260at 453.552 kb on - strand, within EX31_RS19260at 453.626 kb on + strand, within EX31_RS19260at 453.627 kb on - strand, within EX31_RS19260at 453.627 kb on - strand, within EX31_RS19260at 453.646 kb on + strand, within EX31_RS19260at 453.646 kb on + strand, within EX31_RS19260at 453.646 kb on + strand, within EX31_RS19260at 453.646 kb on + strand, within EX31_RS19260at 453.646 kb on + strand, within EX31_RS19260at 453.646 kb on + strand, within EX31_RS19260at 453.647 kb on - strand, within EX31_RS19260at 453.647 kb on - strand, within EX31_RS19260at 453.647 kb on - strand, within EX31_RS19260at 453.647 kb on - strand, within EX31_RS19260at 453.647 kb on - strand, within EX31_RS19260at 453.647 kb on - strand, within EX31_RS19260at 453.647 kb on - strand, within EX31_RS19260at 453.647 kb on - strand, within EX31_RS19260at 453.647 kb on - strand, within EX31_RS19260at 453.647 kb on - strand, within EX31_RS19260at 453.727 kb on + strand, within EX31_RS19260at 453.728 kb on - strand, within EX31_RS19260at 453.728 kb on - strand, within EX31_RS19260at 453.780 kb on - strand, within EX31_RS19260at 453.963 kb on + strand, within EX31_RS19260at 453.963 kb on + strand, within EX31_RS19260at 453.964 kb on - strand, within EX31_RS19260at 453.964 kb on - strand, within EX31_RS19260at 453.988 kb on + strand, within EX31_RS19260at 453.988 kb on + strand, within EX31_RS19260at 454.049 kb on + strand, within EX31_RS19260at 454.050 kb on - strand, within EX31_RS19260at 454.050 kb on - strand, within EX31_RS19260at 454.050 kb on - strand, within EX31_RS19260at 454.062 kb on + strand, within EX31_RS19260at 454.211 kb on + strandat 454.283 kb on + strandat 454.319 kb on + strandat 454.341 kb on + strandat 454.341 kb on + strandat 454.342 kb on - strandat 454.389 kb on - strandat 454.389 kb on - strandat 454.389 kb on - strandat 454.393 kb on + strandat 454.393 kb on + strandat 454.393 kb on + strandat 454.393 kb on + strandat 454.394 kb on - strandat 454.394 kb on - strandat 454.449 kb on + strandat 454.449 kb on + strandat 454.449 kb on + strandat 454.450 kb on - strandat 454.472 kb on - strandat 454.536 kb on + strand, within EX31_RS19265at 454.536 kb on + strand, within EX31_RS19265at 454.536 kb on + strand, within EX31_RS19265at 454.537 kb on - strand, within EX31_RS19265at 454.537 kb on - strand, within EX31_RS19265at 454.537 kb on - strand, within EX31_RS19265at 454.561 kb on + strand, within EX31_RS19265at 454.629 kb on + strand, within EX31_RS19265at 454.629 kb on + strand, within EX31_RS19265at 454.630 kb on - strand, within EX31_RS19265at 454.630 kb on - strand, within EX31_RS19265at 454.743 kb on + strand, within EX31_RS19265at 454.743 kb on + strand, within EX31_RS19265at 454.770 kb on - strand, within EX31_RS19265at 454.820 kb on - strand, within EX31_RS19265at 454.820 kb on - strand, within EX31_RS19265at 454.820 kb on - strand, within EX31_RS19265at 454.820 kb on - strand, within EX31_RS19265at 454.820 kb on - strand, within EX31_RS19265at 454.820 kb on - strand, within EX31_RS19265at 454.870 kb on + strand, within EX31_RS19265at 454.870 kb on + strand, within EX31_RS19265at 454.871 kb on - strand, within EX31_RS19265at 454.897 kb on + strand, within EX31_RS19265at 455.055 kb on + strand, within EX31_RS19265at 455.055 kb on + strand, within EX31_RS19265at 455.229 kb on + strand, within EX31_RS19265at 455.230 kb on - strand, within EX31_RS19265at 455.230 kb on - strand, within EX31_RS19265at 455.271 kb on + strand, within EX31_RS19265at 455.271 kb on + strand, within EX31_RS19265at 455.271 kb on + strand, within EX31_RS19265at 455.272 kb on - strand, within EX31_RS19265at 455.272 kb on - strand, within EX31_RS19265at 455.280 kb on + strand, within EX31_RS19265

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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451,135 - EX31_RS19255 0.18 -0.2
451,175 + EX31_RS19255 0.21 +0.8
451,176 - EX31_RS19255 0.21 +0.5
451,190 + EX31_RS19255 0.23 +0.6
451,190 + EX31_RS19255 0.23 +1.7
451,190 + EX31_RS19255 0.23 +0.3
451,190 + EX31_RS19255 0.23 +0.9
451,191 - EX31_RS19255 0.23 +0.3
451,191 - EX31_RS19255 0.23 -0.3
451,191 - EX31_RS19255 0.23 +0.6
451,191 - EX31_RS19255 0.23 +0.0
451,232 + EX31_RS19255 0.26 -0.9
451,232 + EX31_RS19255 0.26 +0.1
451,232 + EX31_RS19255 0.26 +2.1
451,232 + EX31_RS19255 0.26 +0.8
451,233 - EX31_RS19255 0.26 +0.4
451,233 - EX31_RS19255 0.26 +0.4
451,233 - EX31_RS19255 0.26 +1.0
451,233 - EX31_RS19255 0.26 +0.3
451,251 + EX31_RS19255 0.28 +0.2
451,354 - EX31_RS19255 0.37 +0.9
451,376 + EX31_RS19255 0.39 -0.2
451,488 + EX31_RS19255 0.48 -0.2
451,633 - EX31_RS19255 0.61 +0.9
451,659 + EX31_RS19255 0.63 +0.1
451,660 - EX31_RS19255 0.63 -0.2
451,666 + EX31_RS19255 0.63 +1.1
451,670 + EX31_RS19255 0.64 +0.1
451,670 + EX31_RS19255 0.64 +0.1
451,670 + EX31_RS19255 0.64 -0.5
451,670 + EX31_RS19255 0.64 +0.8
451,671 - EX31_RS19255 0.64 -1.6
451,671 - EX31_RS19255 0.64 -0.1
451,671 - EX31_RS19255 0.64 +0.5
451,671 - EX31_RS19255 0.64 +0.4
451,671 - EX31_RS19255 0.64 +0.7
451,671 - EX31_RS19255 0.64 +0.3
451,671 - EX31_RS19255 0.64 +0.6
451,671 - EX31_RS19255 0.64 +0.9
451,671 - EX31_RS19255 0.64 +1.0
451,672 + EX31_RS19255 0.64 +0.8
451,673 - EX31_RS19255 0.64 -0.5
451,673 - EX31_RS19255 0.64 +0.6
451,673 - EX31_RS19255 0.64 +1.4
451,673 - EX31_RS19255 0.64 +1.0
451,673 - EX31_RS19255 0.64 +1.0
451,673 - EX31_RS19255 0.64 -0.0
451,673 - EX31_RS19255 0.64 +0.6
451,777 + EX31_RS19255 0.73 -0.7
451,777 + EX31_RS19255 0.73 +0.8
451,778 - EX31_RS19255 0.73 -0.7
451,778 - EX31_RS19255 0.73 +0.4
451,778 - EX31_RS19255 0.73 +0.3
451,778 - EX31_RS19255 0.73 +0.8
451,966 + EX31_RS19255 0.89 +0.3
451,966 + EX31_RS19255 0.89 +1.4
451,967 - EX31_RS19255 0.89 -0.8
452,133 - -0.3
452,175 + -0.0
452,309 + +1.0
452,309 + +0.6
452,309 + +0.1
452,309 + +0.3
452,309 + +2.0
452,309 + -0.7
452,309 + +0.3
452,309 + +0.2
452,310 - +0.4
452,310 - +0.8
452,310 - -0.1
452,310 - +0.8
452,310 - +0.7
452,310 - +0.2
452,310 - +1.5
452,310 - +1.5
452,310 - +0.4
452,313 + +0.3
452,313 + +0.4
452,313 + -0.5
452,314 - +0.7
452,314 - +1.0
452,314 - +0.7
452,314 - +0.3
452,314 - -0.0
452,314 - +0.6
452,314 - +0.0
452,314 - +0.5
452,314 - +0.3
452,329 + +0.2
452,330 - EX31_RS19260 0.10 -0.6
452,516 + EX31_RS19260 0.19 +0.4
452,516 + EX31_RS19260 0.19 +1.3
452,516 + EX31_RS19260 0.19 +0.2
452,517 - EX31_RS19260 0.19 +0.1
452,517 - EX31_RS19260 0.19 -0.1
452,517 - EX31_RS19260 0.19 +0.5
452,654 + EX31_RS19260 0.25 +0.4
452,654 + EX31_RS19260 0.25 +1.5
452,830 + EX31_RS19260 0.33 +0.9
452,831 - EX31_RS19260 0.33 +1.5
452,831 - EX31_RS19260 0.33 +0.8
452,831 - EX31_RS19260 0.33 -0.2
452,831 - EX31_RS19260 0.33 +0.5
452,831 - EX31_RS19260 0.33 +0.8
452,836 + EX31_RS19260 0.33 +0.2
452,836 + EX31_RS19260 0.33 +0.5
452,836 + EX31_RS19260 0.33 +0.5
452,837 - EX31_RS19260 0.33 +0.9
452,837 - EX31_RS19260 0.33 +0.6
452,837 - EX31_RS19260 0.33 -0.1
452,837 - EX31_RS19260 0.33 -0.1
452,837 - EX31_RS19260 0.33 +0.8
452,847 - EX31_RS19260 0.34 +0.4
453,073 + EX31_RS19260 0.44 +0.1
453,074 - EX31_RS19260 0.44 -0.4
453,074 - EX31_RS19260 0.44 +1.3
453,101 - EX31_RS19260 0.45 +0.8
453,101 - EX31_RS19260 0.45 +0.3
453,215 - EX31_RS19260 0.51 +1.2
453,299 + EX31_RS19260 0.54 +0.0
453,300 - EX31_RS19260 0.55 +0.6
453,513 - EX31_RS19260 0.64 -0.6
453,513 - EX31_RS19260 0.64 -0.6
453,552 - EX31_RS19260 0.66 -0.3
453,626 + EX31_RS19260 0.70 -0.4
453,627 - EX31_RS19260 0.70 +0.4
453,627 - EX31_RS19260 0.70 -0.1
453,646 + EX31_RS19260 0.70 +1.0
453,646 + EX31_RS19260 0.70 +0.5
453,646 + EX31_RS19260 0.70 +0.8
453,646 + EX31_RS19260 0.70 +0.4
453,646 + EX31_RS19260 0.70 +0.4
453,646 + EX31_RS19260 0.70 +0.8
453,647 - EX31_RS19260 0.70 +0.1
453,647 - EX31_RS19260 0.70 +1.5
453,647 - EX31_RS19260 0.70 +0.6
453,647 - EX31_RS19260 0.70 -1.2
453,647 - EX31_RS19260 0.70 -0.4
453,647 - EX31_RS19260 0.70 +0.8
453,647 - EX31_RS19260 0.70 +0.2
453,647 - EX31_RS19260 0.70 +1.4
453,647 - EX31_RS19260 0.70 +0.6
453,647 - EX31_RS19260 0.70 +0.4
453,727 + EX31_RS19260 0.74 +1.6
453,728 - EX31_RS19260 0.74 +0.1
453,728 - EX31_RS19260 0.74 +0.0
453,780 - EX31_RS19260 0.77 -0.5
453,963 + EX31_RS19260 0.85 -0.2
453,963 + EX31_RS19260 0.85 +0.1
453,964 - EX31_RS19260 0.85 +0.4
453,964 - EX31_RS19260 0.85 +0.0
453,988 + EX31_RS19260 0.86 +0.9
453,988 + EX31_RS19260 0.86 +0.7
454,049 + EX31_RS19260 0.89 +0.5
454,050 - EX31_RS19260 0.89 +1.1
454,050 - EX31_RS19260 0.89 +0.5
454,050 - EX31_RS19260 0.89 +0.1
454,062 + EX31_RS19260 0.90 +0.7
454,211 + +0.4
454,283 + +1.0
454,319 + -1.5
454,341 + +0.5
454,341 + +0.1
454,342 - +0.1
454,389 - +0.1
454,389 - -0.8
454,389 - +1.4
454,393 + -0.2
454,393 + -0.5
454,393 + -0.2
454,393 + +0.8
454,394 - -0.1
454,394 - +0.4
454,449 + +0.4
454,449 + +0.4
454,449 + +0.3
454,450 - +1.0
454,472 - +0.9
454,536 + EX31_RS19265 0.14 +0.8
454,536 + EX31_RS19265 0.14 +0.2
454,536 + EX31_RS19265 0.14 +0.1
454,537 - EX31_RS19265 0.14 -0.2
454,537 - EX31_RS19265 0.14 +0.7
454,537 - EX31_RS19265 0.14 +0.4
454,561 + EX31_RS19265 0.16 -0.4
454,629 + EX31_RS19265 0.21 +0.5
454,629 + EX31_RS19265 0.21 +0.8
454,630 - EX31_RS19265 0.21 -1.0
454,630 - EX31_RS19265 0.21 +0.3
454,743 + EX31_RS19265 0.29 +0.8
454,743 + EX31_RS19265 0.29 -0.5
454,770 - EX31_RS19265 0.31 +0.3
454,820 - EX31_RS19265 0.35 +0.7
454,820 - EX31_RS19265 0.35 +0.4
454,820 - EX31_RS19265 0.35 +0.3
454,820 - EX31_RS19265 0.35 +1.0
454,820 - EX31_RS19265 0.35 -1.1
454,820 - EX31_RS19265 0.35 +0.7
454,870 + EX31_RS19265 0.38 -0.6
454,870 + EX31_RS19265 0.38 +0.9
454,871 - EX31_RS19265 0.39 +0.3
454,897 + EX31_RS19265 0.40 +1.2
455,055 + EX31_RS19265 0.52 +0.3
455,055 + EX31_RS19265 0.52 +0.8
455,229 + EX31_RS19265 0.65 -0.1
455,230 - EX31_RS19265 0.65 +0.4
455,230 - EX31_RS19265 0.65 +0.4
455,271 + EX31_RS19265 0.68 -0.6
455,271 + EX31_RS19265 0.68 +0.3
455,271 + EX31_RS19265 0.68 +0.9
455,272 - EX31_RS19265 0.68 +0.3
455,272 - EX31_RS19265 0.68 +0.8
455,280 + EX31_RS19265 0.68 +0.1

Or see this region's nucleotide sequence