Experiment: NL-CCM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17745 and EX31_RS17750 are separated by 66 nucleotides EX31_RS17750 and EX31_RS17755 are separated by 127 nucleotides
EX31_RS17745: EX31_RS17745 - shikimate transporter, at 103,254 to 104,573
_RS17745
EX31_RS17750: EX31_RS17750 - glutathione S-transferase family protein, at 104,640 to 105,281
_RS17750
EX31_RS17755: EX31_RS17755 - AMP nucleosidase, at 105,409 to 106,857
_RS17755
Position (kb) 104
105
106 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 104.055 kb on + strand, within EX31_RS17745 at 104.055 kb on + strand, within EX31_RS17745 at 104.055 kb on + strand, within EX31_RS17745 at 104.055 kb on + strand, within EX31_RS17745 at 104.055 kb on + strand, within EX31_RS17745 at 104.055 kb on + strand, within EX31_RS17745 at 104.055 kb on + strand, within EX31_RS17745 at 104.055 kb on + strand, within EX31_RS17745 at 104.056 kb on - strand, within EX31_RS17745 at 104.056 kb on - strand, within EX31_RS17745 at 104.056 kb on - strand, within EX31_RS17745 at 104.056 kb on - strand, within EX31_RS17745 at 104.082 kb on + strand, within EX31_RS17745 at 104.082 kb on + strand, within EX31_RS17745 at 104.083 kb on - strand, within EX31_RS17745 at 104.094 kb on - strand, within EX31_RS17745 at 104.148 kb on - strand, within EX31_RS17745 at 104.211 kb on + strand, within EX31_RS17745 at 104.211 kb on + strand, within EX31_RS17745 at 104.211 kb on + strand, within EX31_RS17745 at 104.211 kb on + strand, within EX31_RS17745 at 104.211 kb on + strand, within EX31_RS17745 at 104.212 kb on - strand, within EX31_RS17745 at 104.212 kb on - strand, within EX31_RS17745 at 104.330 kb on + strand, within EX31_RS17745 at 104.330 kb on + strand, within EX31_RS17745 at 104.442 kb on - strand at 104.451 kb on - strand at 104.505 kb on + strand at 104.505 kb on + strand at 104.506 kb on - strand at 104.506 kb on - strand at 104.587 kb on + strand at 104.587 kb on + strand at 104.587 kb on + strand at 104.587 kb on + strand at 104.588 kb on - strand at 104.588 kb on - strand at 104.588 kb on - strand at 104.608 kb on - strand at 104.663 kb on - strand at 104.663 kb on - strand at 104.663 kb on - strand at 104.663 kb on - strand at 104.716 kb on + strand, within EX31_RS17750 at 104.825 kb on - strand, within EX31_RS17750 at 104.825 kb on - strand, within EX31_RS17750 at 104.967 kb on + strand, within EX31_RS17750 at 104.968 kb on - strand, within EX31_RS17750 at 104.997 kb on - strand, within EX31_RS17750 at 105.175 kb on + strand, within EX31_RS17750 at 105.176 kb on - strand, within EX31_RS17750 at 105.176 kb on - strand, within EX31_RS17750 at 105.180 kb on - strand, within EX31_RS17750 at 105.180 kb on - strand, within EX31_RS17750 at 105.203 kb on - strand, within EX31_RS17750 at 105.303 kb on + strand at 105.304 kb on - strand at 105.325 kb on + strand at 105.325 kb on + strand at 105.325 kb on + strand at 105.326 kb on - strand at 105.326 kb on - strand at 105.326 kb on - strand at 105.326 kb on - strand at 105.326 kb on - strand at 105.326 kb on - strand at 105.326 kb on - strand at 105.326 kb on - strand at 105.326 kb on - strand at 105.326 kb on - strand at 105.326 kb on - strand at 105.333 kb on + strand at 105.333 kb on + strand at 105.333 kb on + strand at 105.334 kb on - strand at 105.334 kb on - strand at 105.366 kb on - strand at 105.366 kb on - strand at 105.366 kb on - strand at 105.369 kb on + strand at 105.370 kb on - strand at 105.370 kb on - strand at 105.408 kb on + strand at 105.408 kb on + strand at 105.409 kb on - strand at 105.463 kb on + strand at 105.464 kb on - strand at 105.464 kb on - strand at 105.464 kb on - strand at 105.464 kb on - strand at 105.519 kb on + strand at 105.520 kb on - strand at 105.520 kb on - strand at 105.520 kb on - strand at 105.532 kb on - strand at 105.532 kb on - strand at 105.688 kb on + strand, within EX31_RS17755 at 105.689 kb on - strand, within EX31_RS17755 at 105.724 kb on + strand, within EX31_RS17755 at 105.725 kb on - strand, within EX31_RS17755 at 105.725 kb on - strand, within EX31_RS17755 at 105.775 kb on + strand, within EX31_RS17755 at 105.775 kb on + strand, within EX31_RS17755 at 105.776 kb on - strand, within EX31_RS17755 at 105.776 kb on - strand, within EX31_RS17755 at 105.776 kb on - strand, within EX31_RS17755 at 105.776 kb on - strand, within EX31_RS17755 at 105.864 kb on - strand, within EX31_RS17755 at 105.968 kb on - strand, within EX31_RS17755 at 106.000 kb on + strand, within EX31_RS17755 at 106.000 kb on + strand, within EX31_RS17755 at 106.000 kb on + strand, within EX31_RS17755 at 106.000 kb on + strand, within EX31_RS17755 at 106.001 kb on - strand, within EX31_RS17755 at 106.001 kb on - strand, within EX31_RS17755 at 106.001 kb on - strand, within EX31_RS17755 at 106.001 kb on - strand, within EX31_RS17755 at 106.001 kb on - strand, within EX31_RS17755 at 106.001 kb on - strand, within EX31_RS17755 at 106.007 kb on + strand, within EX31_RS17755 at 106.008 kb on - strand, within EX31_RS17755 at 106.008 kb on - strand, within EX31_RS17755 at 106.018 kb on + strand, within EX31_RS17755 at 106.018 kb on + strand, within EX31_RS17755 at 106.018 kb on + strand, within EX31_RS17755 at 106.019 kb on - strand, within EX31_RS17755 at 106.112 kb on + strand, within EX31_RS17755 at 106.112 kb on + strand, within EX31_RS17755 at 106.112 kb on + strand, within EX31_RS17755 at 106.112 kb on + strand, within EX31_RS17755 at 106.113 kb on - strand, within EX31_RS17755 at 106.113 kb on - strand, within EX31_RS17755 at 106.113 kb on - strand, within EX31_RS17755 at 106.113 kb on - strand, within EX31_RS17755 at 106.117 kb on - strand, within EX31_RS17755 at 106.189 kb on + strand, within EX31_RS17755 at 106.189 kb on + strand, within EX31_RS17755 at 106.190 kb on - strand, within EX31_RS17755 at 106.221 kb on + strand, within EX31_RS17755 at 106.221 kb on + strand, within EX31_RS17755 at 106.221 kb on + strand, within EX31_RS17755 at 106.222 kb on - strand, within EX31_RS17755 at 106.222 kb on - strand, within EX31_RS17755 at 106.222 kb on - strand, within EX31_RS17755 at 106.222 kb on - strand, within EX31_RS17755 at 106.222 kb on - strand, within EX31_RS17755 at 106.222 kb on - strand, within EX31_RS17755
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM remove 104,055 + EX31_RS17745 0.61 +0.9 104,055 + EX31_RS17745 0.61 -1.4 104,055 + EX31_RS17745 0.61 -0.6 104,055 + EX31_RS17745 0.61 +0.2 104,055 + EX31_RS17745 0.61 +0.4 104,055 + EX31_RS17745 0.61 -0.2 104,055 + EX31_RS17745 0.61 +0.5 104,055 + EX31_RS17745 0.61 +0.4 104,056 - EX31_RS17745 0.61 +1.2 104,056 - EX31_RS17745 0.61 -0.3 104,056 - EX31_RS17745 0.61 -0.0 104,056 - EX31_RS17745 0.61 -0.6 104,082 + EX31_RS17745 0.63 -0.3 104,082 + EX31_RS17745 0.63 -0.1 104,083 - EX31_RS17745 0.63 -0.3 104,094 - EX31_RS17745 0.64 -0.2 104,148 - EX31_RS17745 0.68 +0.1 104,211 + EX31_RS17745 0.72 +0.7 104,211 + EX31_RS17745 0.72 +0.2 104,211 + EX31_RS17745 0.72 +1.4 104,211 + EX31_RS17745 0.72 +0.5 104,211 + EX31_RS17745 0.72 +0.3 104,212 - EX31_RS17745 0.73 +0.5 104,212 - EX31_RS17745 0.73 -0.0 104,330 + EX31_RS17745 0.82 -0.9 104,330 + EX31_RS17745 0.82 -0.4 104,442 - +0.8 104,451 - +0.5 104,505 + +1.4 104,505 + +0.3 104,506 - -0.1 104,506 - -0.2 104,587 + +0.0 104,587 + +0.2 104,587 + -0.3 104,587 + +0.9 104,588 - +0.5 104,588 - +0.8 104,588 - +0.6 104,608 - +0.3 104,663 - +0.1 104,663 - +0.6 104,663 - +0.1 104,663 - -0.4 104,716 + EX31_RS17750 0.12 -0.5 104,825 - EX31_RS17750 0.29 -0.5 104,825 - EX31_RS17750 0.29 -0.6 104,967 + EX31_RS17750 0.51 +0.2 104,968 - EX31_RS17750 0.51 -0.2 104,997 - EX31_RS17750 0.56 -0.7 105,175 + EX31_RS17750 0.83 -0.6 105,176 - EX31_RS17750 0.83 -0.5 105,176 - EX31_RS17750 0.83 -0.3 105,180 - EX31_RS17750 0.84 +0.0 105,180 - EX31_RS17750 0.84 -1.0 105,203 - EX31_RS17750 0.88 -0.4 105,303 + -0.2 105,304 - -0.2 105,325 + +0.1 105,325 + -0.4 105,325 + -0.4 105,326 - +0.4 105,326 - +0.6 105,326 - -0.0 105,326 - +0.2 105,326 - +1.6 105,326 - -0.4 105,326 - -0.1 105,326 - -1.0 105,326 - +0.8 105,326 - +0.4 105,326 - -0.0 105,333 + -0.1 105,333 + -0.8 105,333 + +0.7 105,334 - +0.1 105,334 - -2.1 105,366 - +0.4 105,366 - +0.3 105,366 - -0.5 105,369 + -0.1 105,370 - -0.0 105,370 - +0.7 105,408 + -0.0 105,408 + +1.1 105,409 - -0.3 105,463 + -0.5 105,464 - -0.7 105,464 - -0.2 105,464 - +1.0 105,464 - -0.9 105,519 + -0.5 105,520 - +0.3 105,520 - +0.7 105,520 - -0.6 105,532 - +0.8 105,532 - -1.3 105,688 + EX31_RS17755 0.19 -0.8 105,689 - EX31_RS17755 0.19 -0.3 105,724 + EX31_RS17755 0.22 -0.6 105,725 - EX31_RS17755 0.22 -0.3 105,725 - EX31_RS17755 0.22 -0.2 105,775 + EX31_RS17755 0.25 -0.4 105,775 + EX31_RS17755 0.25 -0.4 105,776 - EX31_RS17755 0.25 +0.0 105,776 - EX31_RS17755 0.25 +1.3 105,776 - EX31_RS17755 0.25 -1.5 105,776 - EX31_RS17755 0.25 -0.9 105,864 - EX31_RS17755 0.31 -1.5 105,968 - EX31_RS17755 0.39 -0.2 106,000 + EX31_RS17755 0.41 +0.7 106,000 + EX31_RS17755 0.41 +1.2 106,000 + EX31_RS17755 0.41 -0.9 106,000 + EX31_RS17755 0.41 +0.4 106,001 - EX31_RS17755 0.41 +0.6 106,001 - EX31_RS17755 0.41 -1.8 106,001 - EX31_RS17755 0.41 -0.4 106,001 - EX31_RS17755 0.41 +3.1 106,001 - EX31_RS17755 0.41 +0.1 106,001 - EX31_RS17755 0.41 -1.2 106,007 + EX31_RS17755 0.41 -1.7 106,008 - EX31_RS17755 0.41 -0.1 106,008 - EX31_RS17755 0.41 -0.6 106,018 + EX31_RS17755 0.42 +1.2 106,018 + EX31_RS17755 0.42 +0.6 106,018 + EX31_RS17755 0.42 +0.5 106,019 - EX31_RS17755 0.42 -0.5 106,112 + EX31_RS17755 0.49 +0.1 106,112 + EX31_RS17755 0.49 -0.2 106,112 + EX31_RS17755 0.49 -0.4 106,112 + EX31_RS17755 0.49 +1.4 106,113 - EX31_RS17755 0.49 -1.3 106,113 - EX31_RS17755 0.49 +2.0 106,113 - EX31_RS17755 0.49 +1.2 106,113 - EX31_RS17755 0.49 -0.3 106,117 - EX31_RS17755 0.49 +0.0 106,189 + EX31_RS17755 0.54 -0.5 106,189 + EX31_RS17755 0.54 -0.2 106,190 - EX31_RS17755 0.54 -0.0 106,221 + EX31_RS17755 0.56 +0.6 106,221 + EX31_RS17755 0.56 +0.8 106,221 + EX31_RS17755 0.56 +0.4 106,222 - EX31_RS17755 0.56 +1.4 106,222 - EX31_RS17755 0.56 +0.6 106,222 - EX31_RS17755 0.56 +0.5 106,222 - EX31_RS17755 0.56 -0.1 106,222 - EX31_RS17755 0.56 -1.3 106,222 - EX31_RS17755 0.56 +0.2
Or see this region's nucleotide sequence