Strain Fitness in Rahnella sp. WP5 around EX31_RS15645

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15640 and EX31_RS15645 are separated by 215 nucleotidesEX31_RS15645 and EX31_RS15650 overlap by 14 nucleotides EX31_RS15640: EX31_RS15640 - porphobilinogen synthase, at 26,214 to 27,188 _RS15640 EX31_RS15645: EX31_RS15645 - peptidase domain-containing ABC transporter, at 27,404 to 29,503 _RS15645 EX31_RS15650: EX31_RS15650 - HlyD family secretion protein, at 29,490 to 30,836 _RS15650 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2at 27.300 kb on + strandat 27.306 kb on - strandat 27.344 kb on + strandat 27.344 kb on + strandat 27.345 kb on - strandat 27.460 kb on + strandat 27.473 kb on - strandat 27.686 kb on - strand, within EX31_RS15645at 27.686 kb on - strand, within EX31_RS15645at 27.758 kb on - strand, within EX31_RS15645at 28.226 kb on - strand, within EX31_RS15645at 28.324 kb on + strand, within EX31_RS15645at 28.351 kb on + strand, within EX31_RS15645at 28.395 kb on - strand, within EX31_RS15645at 28.503 kb on + strand, within EX31_RS15645at 28.503 kb on + strand, within EX31_RS15645at 28.503 kb on + strand, within EX31_RS15645at 28.503 kb on + strand, within EX31_RS15645at 28.503 kb on + strand, within EX31_RS15645at 28.504 kb on - strand, within EX31_RS15645at 28.504 kb on - strand, within EX31_RS15645at 28.504 kb on - strand, within EX31_RS15645at 28.504 kb on - strand, within EX31_RS15645at 28.527 kb on + strand, within EX31_RS15645at 28.527 kb on + strand, within EX31_RS15645at 28.528 kb on - strand, within EX31_RS15645at 28.528 kb on - strand, within EX31_RS15645at 28.528 kb on - strand, within EX31_RS15645at 28.573 kb on - strand, within EX31_RS15645at 28.573 kb on - strand, within EX31_RS15645at 28.606 kb on + strand, within EX31_RS15645at 28.606 kb on + strand, within EX31_RS15645at 28.606 kb on + strand, within EX31_RS15645at 28.606 kb on + strand, within EX31_RS15645at 28.607 kb on - strand, within EX31_RS15645at 28.607 kb on - strand, within EX31_RS15645at 28.607 kb on - strand, within EX31_RS15645at 28.607 kb on - strand, within EX31_RS15645at 28.607 kb on - strand, within EX31_RS15645at 28.607 kb on - strand, within EX31_RS15645at 28.622 kb on - strand, within EX31_RS15645at 28.622 kb on - strand, within EX31_RS15645at 28.673 kb on - strand, within EX31_RS15645at 28.673 kb on - strand, within EX31_RS15645at 28.778 kb on - strand, within EX31_RS15645at 28.845 kb on - strand, within EX31_RS15645at 28.869 kb on - strand, within EX31_RS15645at 29.051 kb on - strand, within EX31_RS15645at 29.150 kb on - strand, within EX31_RS15645at 29.213 kb on - strand, within EX31_RS15645at 29.213 kb on - strand, within EX31_RS15645at 29.213 kb on - strand, within EX31_RS15645at 29.256 kb on - strand, within EX31_RS15645at 29.327 kb on + strandat 29.328 kb on - strandat 29.335 kb on - strandat 29.458 kb on + strandat 29.561 kb on - strandat 29.561 kb on - strandat 29.675 kb on - strand, within EX31_RS15650at 29.848 kb on + strand, within EX31_RS15650at 29.864 kb on + strand, within EX31_RS15650at 29.865 kb on - strand, within EX31_RS15650at 29.897 kb on + strand, within EX31_RS15650at 29.897 kb on + strand, within EX31_RS15650at 30.194 kb on - strand, within EX31_RS15650at 30.194 kb on - strand, within EX31_RS15650at 30.218 kb on + strand, within EX31_RS15650at 30.218 kb on + strand, within EX31_RS15650at 30.241 kb on + strand, within EX31_RS15650at 30.377 kb on + strand, within EX31_RS15650at 30.428 kb on + strand, within EX31_RS15650at 30.449 kb on + strand, within EX31_RS15650at 30.496 kb on - strand, within EX31_RS15650at 30.496 kb on - strand, within EX31_RS15650

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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27,300 + +1.9
27,306 - +0.1
27,344 + -0.4
27,344 + -2.4
27,345 - -0.8
27,460 + +0.3
27,473 - +0.0
27,686 - EX31_RS15645 0.13 -0.4
27,686 - EX31_RS15645 0.13 +0.0
27,758 - EX31_RS15645 0.17 +0.4
28,226 - EX31_RS15645 0.39 +0.4
28,324 + EX31_RS15645 0.44 -0.1
28,351 + EX31_RS15645 0.45 +0.4
28,395 - EX31_RS15645 0.47 -1.6
28,503 + EX31_RS15645 0.52 -0.1
28,503 + EX31_RS15645 0.52 +0.5
28,503 + EX31_RS15645 0.52 +0.3
28,503 + EX31_RS15645 0.52 -2.2
28,503 + EX31_RS15645 0.52 -0.7
28,504 - EX31_RS15645 0.52 +1.2
28,504 - EX31_RS15645 0.52 +1.3
28,504 - EX31_RS15645 0.52 +1.0
28,504 - EX31_RS15645 0.52 +1.0
28,527 + EX31_RS15645 0.53 -0.6
28,527 + EX31_RS15645 0.53 -0.2
28,528 - EX31_RS15645 0.54 +1.1
28,528 - EX31_RS15645 0.54 -0.4
28,528 - EX31_RS15645 0.54 -0.1
28,573 - EX31_RS15645 0.56 +0.3
28,573 - EX31_RS15645 0.56 -1.2
28,606 + EX31_RS15645 0.57 +0.8
28,606 + EX31_RS15645 0.57 +0.7
28,606 + EX31_RS15645 0.57 +1.1
28,606 + EX31_RS15645 0.57 +0.4
28,607 - EX31_RS15645 0.57 +1.3
28,607 - EX31_RS15645 0.57 -1.5
28,607 - EX31_RS15645 0.57 -0.4
28,607 - EX31_RS15645 0.57 +0.7
28,607 - EX31_RS15645 0.57 +0.1
28,607 - EX31_RS15645 0.57 -1.6
28,622 - EX31_RS15645 0.58 -0.3
28,622 - EX31_RS15645 0.58 -1.3
28,673 - EX31_RS15645 0.60 +0.0
28,673 - EX31_RS15645 0.60 +1.1
28,778 - EX31_RS15645 0.65 -0.2
28,845 - EX31_RS15645 0.69 -0.4
28,869 - EX31_RS15645 0.70 -0.1
29,051 - EX31_RS15645 0.78 +1.3
29,150 - EX31_RS15645 0.83 +0.8
29,213 - EX31_RS15645 0.86 +0.6
29,213 - EX31_RS15645 0.86 -1.2
29,213 - EX31_RS15645 0.86 +0.1
29,256 - EX31_RS15645 0.88 -0.4
29,327 + -1.1
29,328 - -0.8
29,335 - -1.8
29,458 + +0.1
29,561 - -0.7
29,561 - -0.4
29,675 - EX31_RS15650 0.14 -0.6
29,848 + EX31_RS15650 0.27 +0.2
29,864 + EX31_RS15650 0.28 +0.7
29,865 - EX31_RS15650 0.28 -0.3
29,897 + EX31_RS15650 0.30 -0.4
29,897 + EX31_RS15650 0.30 -0.7
30,194 - EX31_RS15650 0.52 -0.4
30,194 - EX31_RS15650 0.52 -0.3
30,218 + EX31_RS15650 0.54 -0.1
30,218 + EX31_RS15650 0.54 +0.1
30,241 + EX31_RS15650 0.56 -0.3
30,377 + EX31_RS15650 0.66 -0.3
30,428 + EX31_RS15650 0.70 -0.5
30,449 + EX31_RS15650 0.71 -0.6
30,496 - EX31_RS15650 0.75 +0.8
30,496 - EX31_RS15650 0.75 +0.0

Or see this region's nucleotide sequence