Experiment: NL-CCM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15635 and EX31_RS15640 are separated by 342 nucleotides EX31_RS15640 and EX31_RS15645 are separated by 215 nucleotides
EX31_RS15635: EX31_RS15635 - HAMP domain-containing protein, at 24,042 to 25,871
_RS15635
EX31_RS15640: EX31_RS15640 - porphobilinogen synthase, at 26,214 to 27,188
_RS15640
EX31_RS15645: EX31_RS15645 - peptidase domain-containing ABC transporter, at 27,404 to 29,503
_RS15645
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.304 kb on + strand, within EX31_RS15635 at 25.305 kb on - strand, within EX31_RS15635 at 25.326 kb on + strand, within EX31_RS15635 at 25.409 kb on - strand, within EX31_RS15635 at 25.520 kb on - strand, within EX31_RS15635 at 25.547 kb on + strand, within EX31_RS15635 at 25.618 kb on - strand, within EX31_RS15635 at 25.667 kb on - strand, within EX31_RS15635 at 25.707 kb on + strand at 25.726 kb on - strand at 25.749 kb on - strand at 25.774 kb on - strand at 25.816 kb on - strand at 25.901 kb on + strand at 25.909 kb on + strand at 25.947 kb on + strand at 26.040 kb on + strand at 26.047 kb on + strand at 26.048 kb on - strand at 26.050 kb on + strand at 26.051 kb on - strand at 26.061 kb on + strand at 26.087 kb on + strand at 26.111 kb on + strand at 26.130 kb on + strand at 26.130 kb on + strand at 26.130 kb on + strand at 26.142 kb on + strand at 27.300 kb on + strand at 27.306 kb on - strand at 27.344 kb on + strand at 27.344 kb on + strand at 27.345 kb on - strand at 27.460 kb on + strand at 27.473 kb on - strand at 27.686 kb on - strand, within EX31_RS15645 at 27.686 kb on - strand, within EX31_RS15645 at 27.758 kb on - strand, within EX31_RS15645
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM remove 25,304 + EX31_RS15635 0.69 -0.5 25,305 - EX31_RS15635 0.69 +0.6 25,326 + EX31_RS15635 0.70 -0.9 25,409 - EX31_RS15635 0.75 +0.0 25,520 - EX31_RS15635 0.81 -1.1 25,547 + EX31_RS15635 0.82 -0.2 25,618 - EX31_RS15635 0.86 +1.0 25,667 - EX31_RS15635 0.89 +0.6 25,707 + -0.1 25,726 - +0.5 25,749 - +1.1 25,774 - -0.1 25,816 - +0.4 25,901 + +0.4 25,909 + +0.6 25,947 + -0.2 26,040 + -0.4 26,047 + +0.3 26,048 - +1.1 26,050 + +0.3 26,051 - +0.4 26,061 + -0.3 26,087 + -0.1 26,111 + -0.6 26,130 + +0.7 26,130 + +0.6 26,130 + +0.4 26,142 + +1.1 27,300 + +1.9 27,306 - +0.1 27,344 + -0.4 27,344 + -2.4 27,345 - -0.8 27,460 + +0.3 27,473 - +0.0 27,686 - EX31_RS15645 0.13 -0.4 27,686 - EX31_RS15645 0.13 +0.0 27,758 - EX31_RS15645 0.17 +0.4
Or see this region's nucleotide sequence