Experiment: NL-CCM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11165 and EX31_RS11170 are separated by 48 nucleotides EX31_RS11170 and EX31_RS11175 are separated by 467 nucleotides
EX31_RS11165: EX31_RS11165 - hypothetical protein, at 164,674 to 165,816
_RS11165
EX31_RS11170: EX31_RS11170 - bifunctional 2-methylcitrate dehydratase/aconitate hydratase, at 165,865 to 167,292
_RS11170
EX31_RS11175: EX31_RS11175 - LysR family transcriptional regulator, at 167,760 to 168,647
_RS11175
Position (kb) 165
166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 164.885 kb on + strand, within EX31_RS11165 at 164.885 kb on + strand, within EX31_RS11165 at 164.885 kb on + strand, within EX31_RS11165 at 164.886 kb on - strand, within EX31_RS11165 at 164.886 kb on - strand, within EX31_RS11165 at 165.246 kb on + strand, within EX31_RS11165 at 165.246 kb on + strand, within EX31_RS11165 at 165.269 kb on - strand, within EX31_RS11165 at 165.288 kb on + strand, within EX31_RS11165 at 165.288 kb on + strand, within EX31_RS11165 at 165.288 kb on + strand, within EX31_RS11165 at 165.317 kb on + strand, within EX31_RS11165 at 165.317 kb on + strand, within EX31_RS11165 at 165.317 kb on + strand, within EX31_RS11165 at 165.318 kb on - strand, within EX31_RS11165 at 165.390 kb on - strand, within EX31_RS11165 at 165.390 kb on - strand, within EX31_RS11165 at 165.390 kb on - strand, within EX31_RS11165 at 165.393 kb on + strand, within EX31_RS11165 at 165.481 kb on - strand, within EX31_RS11165 at 165.667 kb on + strand, within EX31_RS11165 at 165.698 kb on - strand, within EX31_RS11165 at 165.799 kb on + strand at 165.799 kb on + strand at 165.799 kb on + strand at 165.802 kb on + strand at 165.842 kb on + strand at 165.842 kb on + strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.843 kb on - strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.846 kb on + strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.847 kb on - strand at 165.855 kb on + strand at 165.949 kb on - strand at 165.949 kb on - strand at 166.122 kb on + strand, within EX31_RS11170 at 166.136 kb on + strand, within EX31_RS11170 at 166.136 kb on + strand, within EX31_RS11170 at 166.136 kb on + strand, within EX31_RS11170 at 166.136 kb on + strand, within EX31_RS11170 at 166.271 kb on + strand, within EX31_RS11170 at 166.272 kb on - strand, within EX31_RS11170 at 166.320 kb on + strand, within EX31_RS11170 at 166.321 kb on - strand, within EX31_RS11170 at 166.417 kb on - strand, within EX31_RS11170 at 166.429 kb on + strand, within EX31_RS11170 at 166.430 kb on - strand, within EX31_RS11170 at 166.449 kb on - strand, within EX31_RS11170 at 166.485 kb on + strand, within EX31_RS11170 at 166.659 kb on + strand, within EX31_RS11170 at 166.659 kb on + strand, within EX31_RS11170 at 166.716 kb on + strand, within EX31_RS11170 at 166.716 kb on + strand, within EX31_RS11170 at 166.827 kb on + strand, within EX31_RS11170 at 166.917 kb on + strand, within EX31_RS11170 at 166.918 kb on - strand, within EX31_RS11170 at 166.932 kb on + strand, within EX31_RS11170 at 166.933 kb on - strand, within EX31_RS11170 at 167.040 kb on + strand, within EX31_RS11170 at 167.041 kb on - strand, within EX31_RS11170 at 167.210 kb on - strand at 167.241 kb on - strand at 167.247 kb on - strand at 167.247 kb on - strand at 167.267 kb on - strand at 167.267 kb on - strand at 167.267 kb on - strand at 167.328 kb on - strand at 167.333 kb on + strand at 167.334 kb on - strand at 167.334 kb on - strand at 167.334 kb on - strand at 167.352 kb on + strand at 167.352 kb on + strand at 167.353 kb on - strand at 167.353 kb on - strand at 167.353 kb on - strand at 167.354 kb on + strand at 167.355 kb on - strand at 167.355 kb on - strand at 167.355 kb on - strand at 167.355 kb on - strand at 167.355 kb on - strand at 167.355 kb on - strand at 167.478 kb on + strand at 167.479 kb on - strand at 167.541 kb on + strand at 167.594 kb on - strand at 167.612 kb on - strand at 167.614 kb on + strand at 167.615 kb on - strand at 167.618 kb on - strand at 167.686 kb on + strand at 167.713 kb on + strand at 167.713 kb on + strand at 167.717 kb on + strand at 167.717 kb on + strand at 167.718 kb on - strand at 167.737 kb on + strand at 167.767 kb on + strand at 167.767 kb on + strand at 167.812 kb on + strand at 167.852 kb on + strand, within EX31_RS11175 at 167.883 kb on - strand, within EX31_RS11175 at 167.902 kb on + strand, within EX31_RS11175 at 167.947 kb on + strand, within EX31_RS11175 at 167.947 kb on + strand, within EX31_RS11175 at 167.947 kb on + strand, within EX31_RS11175 at 167.948 kb on - strand, within EX31_RS11175 at 167.948 kb on - strand, within EX31_RS11175 at 167.972 kb on - strand, within EX31_RS11175 at 168.033 kb on - strand, within EX31_RS11175 at 168.066 kb on + strand, within EX31_RS11175 at 168.068 kb on + strand, within EX31_RS11175 at 168.091 kb on + strand, within EX31_RS11175 at 168.120 kb on - strand, within EX31_RS11175 at 168.137 kb on + strand, within EX31_RS11175 at 168.226 kb on + strand, within EX31_RS11175 at 168.229 kb on + strand, within EX31_RS11175 at 168.254 kb on + strand, within EX31_RS11175 at 168.254 kb on + strand, within EX31_RS11175 at 168.254 kb on + strand, within EX31_RS11175
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM remove 164,885 + EX31_RS11165 0.18 +0.3 164,885 + EX31_RS11165 0.18 -0.8 164,885 + EX31_RS11165 0.18 +0.1 164,886 - EX31_RS11165 0.19 -3.0 164,886 - EX31_RS11165 0.19 +0.1 165,246 + EX31_RS11165 0.50 -0.8 165,246 + EX31_RS11165 0.50 +0.7 165,269 - EX31_RS11165 0.52 -1.7 165,288 + EX31_RS11165 0.54 +0.1 165,288 + EX31_RS11165 0.54 -1.2 165,288 + EX31_RS11165 0.54 -0.2 165,317 + EX31_RS11165 0.56 -0.6 165,317 + EX31_RS11165 0.56 +0.7 165,317 + EX31_RS11165 0.56 -0.4 165,318 - EX31_RS11165 0.56 +0.2 165,390 - EX31_RS11165 0.63 +0.6 165,390 - EX31_RS11165 0.63 -0.6 165,390 - EX31_RS11165 0.63 +0.1 165,393 + EX31_RS11165 0.63 +0.1 165,481 - EX31_RS11165 0.71 +0.1 165,667 + EX31_RS11165 0.87 +0.6 165,698 - EX31_RS11165 0.90 +0.8 165,799 + -0.6 165,799 + +0.2 165,799 + +0.4 165,802 + -0.4 165,842 + +0.7 165,842 + +1.6 165,843 - -0.2 165,843 - +0.1 165,843 - -0.5 165,843 - +1.1 165,843 - -0.8 165,843 - +0.1 165,843 - +0.4 165,843 - +0.2 165,843 - -1.0 165,846 + -1.6 165,846 + +0.4 165,846 + -0.5 165,846 + +1.1 165,846 + +1.2 165,846 + +1.8 165,846 + -2.2 165,846 + -0.6 165,846 + -0.9 165,846 + +0.3 165,846 + +0.6 165,846 + +0.3 165,846 + -0.5 165,846 + -0.8 165,846 + -0.6 165,846 + +0.3 165,847 - +1.7 165,847 - -0.7 165,847 - +0.1 165,847 - +1.4 165,847 - -0.4 165,847 - +1.2 165,847 - +1.0 165,847 - -0.2 165,847 - -1.1 165,847 - -0.7 165,847 - -0.3 165,847 - +0.1 165,847 - -0.8 165,847 - -0.6 165,847 - +1.0 165,847 - +0.3 165,855 + +0.0 165,949 - +0.4 165,949 - +1.1 166,122 + EX31_RS11170 0.18 -0.2 166,136 + EX31_RS11170 0.19 -0.4 166,136 + EX31_RS11170 0.19 -0.3 166,136 + EX31_RS11170 0.19 -0.5 166,136 + EX31_RS11170 0.19 +0.4 166,271 + EX31_RS11170 0.28 -0.3 166,272 - EX31_RS11170 0.29 +0.0 166,320 + EX31_RS11170 0.32 -0.1 166,321 - EX31_RS11170 0.32 +1.0 166,417 - EX31_RS11170 0.39 +0.0 166,429 + EX31_RS11170 0.39 -0.2 166,430 - EX31_RS11170 0.40 +0.9 166,449 - EX31_RS11170 0.41 -0.1 166,485 + EX31_RS11170 0.43 -0.6 166,659 + EX31_RS11170 0.56 -0.3 166,659 + EX31_RS11170 0.56 +1.1 166,716 + EX31_RS11170 0.60 +0.7 166,716 + EX31_RS11170 0.60 -1.1 166,827 + EX31_RS11170 0.67 +0.6 166,917 + EX31_RS11170 0.74 +0.8 166,918 - EX31_RS11170 0.74 +0.2 166,932 + EX31_RS11170 0.75 +0.9 166,933 - EX31_RS11170 0.75 +0.3 167,040 + EX31_RS11170 0.82 +0.1 167,041 - EX31_RS11170 0.82 +0.5 167,210 - -0.4 167,241 - +0.4 167,247 - +0.1 167,247 - -0.5 167,267 - -0.3 167,267 - -0.1 167,267 - -0.2 167,328 - -1.1 167,333 + -0.2 167,334 - +0.3 167,334 - -0.8 167,334 - -0.6 167,352 + -0.2 167,352 + -0.1 167,353 - +0.5 167,353 - -0.5 167,353 - -0.0 167,354 + +0.5 167,355 - -1.7 167,355 - -0.3 167,355 - -0.3 167,355 - +1.8 167,355 - -0.1 167,355 - +2.0 167,478 + -0.4 167,479 - -0.1 167,541 + +0.8 167,594 - +0.8 167,612 - +1.2 167,614 + +0.9 167,615 - +0.8 167,618 - +0.2 167,686 + +1.1 167,713 + +0.6 167,713 + -1.0 167,717 + +0.6 167,717 + +0.1 167,718 - +1.1 167,737 + +0.4 167,767 + -0.0 167,767 + +0.5 167,812 + -0.4 167,852 + EX31_RS11175 0.10 +0.2 167,883 - EX31_RS11175 0.14 -2.3 167,902 + EX31_RS11175 0.16 +1.0 167,947 + EX31_RS11175 0.21 +0.3 167,947 + EX31_RS11175 0.21 -1.0 167,947 + EX31_RS11175 0.21 -0.0 167,948 - EX31_RS11175 0.21 -0.1 167,948 - EX31_RS11175 0.21 +0.8 167,972 - EX31_RS11175 0.24 +1.1 168,033 - EX31_RS11175 0.31 -0.3 168,066 + EX31_RS11175 0.34 -0.8 168,068 + EX31_RS11175 0.35 +0.3 168,091 + EX31_RS11175 0.37 -0.3 168,120 - EX31_RS11175 0.41 +0.5 168,137 + EX31_RS11175 0.42 -0.4 168,226 + EX31_RS11175 0.52 -0.1 168,229 + EX31_RS11175 0.53 +0.7 168,254 + EX31_RS11175 0.56 -0.1 168,254 + EX31_RS11175 0.56 -0.5 168,254 + EX31_RS11175 0.56 -2.7
Or see this region's nucleotide sequence