Strain Fitness in Rahnella sp. WP5 around EX31_RS02250

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02245 and EX31_RS02250 are separated by 121 nucleotidesEX31_RS02250 and EX31_RS02255 are separated by 155 nucleotides EX31_RS02245: EX31_RS02245 - amidohydrolase, at 484,739 to 486,619 _RS02245 EX31_RS02250: EX31_RS02250 - transcriptional regulator GcvA, at 486,741 to 487,646 _RS02250 EX31_RS02255: EX31_RS02255 - oxidoreductase, at 487,802 to 488,692 _RS02255 Position (kb) 486 487 488Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 485.783 kb on + strand, within EX31_RS02245at 485.783 kb on + strand, within EX31_RS02245at 485.784 kb on - strand, within EX31_RS02245at 485.934 kb on + strand, within EX31_RS02245at 485.944 kb on + strand, within EX31_RS02245at 485.963 kb on + strand, within EX31_RS02245at 485.963 kb on + strand, within EX31_RS02245at 485.963 kb on + strand, within EX31_RS02245at 485.964 kb on - strand, within EX31_RS02245at 485.964 kb on - strand, within EX31_RS02245at 485.978 kb on + strand, within EX31_RS02245at 485.995 kb on + strand, within EX31_RS02245at 485.995 kb on + strand, within EX31_RS02245at 486.077 kb on + strand, within EX31_RS02245at 486.077 kb on + strand, within EX31_RS02245at 486.078 kb on - strand, within EX31_RS02245at 486.078 kb on - strand, within EX31_RS02245at 486.078 kb on - strand, within EX31_RS02245at 486.078 kb on - strand, within EX31_RS02245at 486.078 kb on - strand, within EX31_RS02245at 486.078 kb on - strand, within EX31_RS02245at 486.078 kb on - strand, within EX31_RS02245at 486.079 kb on + strand, within EX31_RS02245at 486.080 kb on - strand, within EX31_RS02245at 486.098 kb on + strand, within EX31_RS02245at 486.099 kb on - strand, within EX31_RS02245at 486.099 kb on - strand, within EX31_RS02245at 486.099 kb on - strand, within EX31_RS02245at 486.140 kb on + strand, within EX31_RS02245at 486.140 kb on + strand, within EX31_RS02245at 486.140 kb on + strand, within EX31_RS02245at 486.141 kb on - strand, within EX31_RS02245at 486.141 kb on - strand, within EX31_RS02245at 486.304 kb on + strand, within EX31_RS02245at 486.305 kb on - strand, within EX31_RS02245at 486.305 kb on - strand, within EX31_RS02245at 486.440 kb on + strandat 486.524 kb on - strandat 486.595 kb on - strandat 486.709 kb on - strandat 486.717 kb on + strandat 486.718 kb on - strandat 486.718 kb on - strandat 486.718 kb on - strandat 486.718 kb on - strandat 486.725 kb on + strandat 486.806 kb on + strandat 486.831 kb on - strandat 486.831 kb on - strandat 486.833 kb on + strand, within EX31_RS02250at 486.876 kb on - strand, within EX31_RS02250at 486.906 kb on - strand, within EX31_RS02250at 486.966 kb on - strand, within EX31_RS02250at 486.966 kb on - strand, within EX31_RS02250at 486.966 kb on - strand, within EX31_RS02250at 486.968 kb on + strand, within EX31_RS02250at 487.038 kb on + strand, within EX31_RS02250at 487.081 kb on + strand, within EX31_RS02250at 487.082 kb on - strand, within EX31_RS02250at 487.136 kb on + strand, within EX31_RS02250at 487.137 kb on - strand, within EX31_RS02250at 487.184 kb on + strand, within EX31_RS02250at 487.184 kb on + strand, within EX31_RS02250at 487.184 kb on + strand, within EX31_RS02250at 487.185 kb on - strand, within EX31_RS02250at 487.185 kb on - strand, within EX31_RS02250at 487.189 kb on - strand, within EX31_RS02250at 487.189 kb on - strand, within EX31_RS02250at 487.189 kb on - strand, within EX31_RS02250at 487.203 kb on - strand, within EX31_RS02250at 487.203 kb on - strand, within EX31_RS02250at 487.211 kb on + strand, within EX31_RS02250at 487.228 kb on + strand, within EX31_RS02250at 487.228 kb on + strand, within EX31_RS02250at 487.256 kb on - strand, within EX31_RS02250at 487.271 kb on - strand, within EX31_RS02250at 487.356 kb on - strand, within EX31_RS02250at 487.356 kb on - strand, within EX31_RS02250at 487.381 kb on + strand, within EX31_RS02250at 487.415 kb on + strand, within EX31_RS02250at 487.416 kb on - strand, within EX31_RS02250at 487.543 kb on - strand, within EX31_RS02250at 487.545 kb on + strand, within EX31_RS02250at 487.545 kb on + strand, within EX31_RS02250at 487.545 kb on + strand, within EX31_RS02250at 487.545 kb on + strand, within EX31_RS02250at 487.546 kb on - strand, within EX31_RS02250at 487.638 kb on + strandat 487.639 kb on - strandat 487.650 kb on - strandat 487.650 kb on - strandat 487.650 kb on - strandat 487.656 kb on + strandat 487.665 kb on + strandat 487.719 kb on + strandat 487.719 kb on + strandat 487.720 kb on - strandat 487.720 kb on - strandat 487.720 kb on - strandat 487.737 kb on - strandat 487.751 kb on - strandat 487.774 kb on + strandat 487.774 kb on + strandat 487.774 kb on + strandat 487.774 kb on + strandat 487.775 kb on - strandat 487.819 kb on + strandat 487.830 kb on + strandat 487.830 kb on + strandat 487.830 kb on + strandat 487.831 kb on - strandat 487.831 kb on - strandat 487.971 kb on + strand, within EX31_RS02255at 488.081 kb on - strand, within EX31_RS02255at 488.135 kb on + strand, within EX31_RS02255at 488.429 kb on + strand, within EX31_RS02255at 488.429 kb on + strand, within EX31_RS02255at 488.430 kb on - strand, within EX31_RS02255at 488.430 kb on - strand, within EX31_RS02255at 488.542 kb on + strand, within EX31_RS02255at 488.542 kb on + strand, within EX31_RS02255at 488.543 kb on - strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.601 kb on + strand, within EX31_RS02255at 488.633 kb on - strandat 488.633 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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485,783 + EX31_RS02245 0.56 +0.3
485,783 + EX31_RS02245 0.56 +0.1
485,784 - EX31_RS02245 0.56 -1.2
485,934 + EX31_RS02245 0.64 -0.1
485,944 + EX31_RS02245 0.64 +0.2
485,963 + EX31_RS02245 0.65 +1.1
485,963 + EX31_RS02245 0.65 -0.2
485,963 + EX31_RS02245 0.65 +0.8
485,964 - EX31_RS02245 0.65 -1.2
485,964 - EX31_RS02245 0.65 -0.7
485,978 + EX31_RS02245 0.66 -0.5
485,995 + EX31_RS02245 0.67 -0.5
485,995 + EX31_RS02245 0.67 +0.1
486,077 + EX31_RS02245 0.71 -0.4
486,077 + EX31_RS02245 0.71 -0.7
486,078 - EX31_RS02245 0.71 +0.2
486,078 - EX31_RS02245 0.71 +0.6
486,078 - EX31_RS02245 0.71 +0.2
486,078 - EX31_RS02245 0.71 +0.2
486,078 - EX31_RS02245 0.71 -0.5
486,078 - EX31_RS02245 0.71 +0.2
486,078 - EX31_RS02245 0.71 -0.7
486,079 + EX31_RS02245 0.71 +0.4
486,080 - EX31_RS02245 0.71 +0.8
486,098 + EX31_RS02245 0.72 +0.0
486,099 - EX31_RS02245 0.72 -0.7
486,099 - EX31_RS02245 0.72 +0.2
486,099 - EX31_RS02245 0.72 +0.3
486,140 + EX31_RS02245 0.74 -0.8
486,140 + EX31_RS02245 0.74 +0.5
486,140 + EX31_RS02245 0.74 +0.4
486,141 - EX31_RS02245 0.75 +1.1
486,141 - EX31_RS02245 0.75 +0.3
486,304 + EX31_RS02245 0.83 -1.0
486,305 - EX31_RS02245 0.83 +0.9
486,305 - EX31_RS02245 0.83 +1.3
486,440 + -0.0
486,524 - +0.8
486,595 - -0.1
486,709 - +0.0
486,717 + -0.2
486,718 - +0.4
486,718 - -1.1
486,718 - +1.9
486,718 - -0.1
486,725 + -0.4
486,806 + -1.2
486,831 - +0.4
486,831 - -0.6
486,833 + EX31_RS02250 0.10 -1.6
486,876 - EX31_RS02250 0.15 -0.2
486,906 - EX31_RS02250 0.18 +0.6
486,966 - EX31_RS02250 0.25 -1.2
486,966 - EX31_RS02250 0.25 +0.9
486,966 - EX31_RS02250 0.25 -0.1
486,968 + EX31_RS02250 0.25 -2.3
487,038 + EX31_RS02250 0.33 +0.4
487,081 + EX31_RS02250 0.38 +0.4
487,082 - EX31_RS02250 0.38 -1.0
487,136 + EX31_RS02250 0.44 -3.0
487,137 - EX31_RS02250 0.44 +0.1
487,184 + EX31_RS02250 0.49 -0.6
487,184 + EX31_RS02250 0.49 -0.1
487,184 + EX31_RS02250 0.49 +1.2
487,185 - EX31_RS02250 0.49 +0.0
487,185 - EX31_RS02250 0.49 +0.5
487,189 - EX31_RS02250 0.49 -1.0
487,189 - EX31_RS02250 0.49 +1.7
487,189 - EX31_RS02250 0.49 +0.4
487,203 - EX31_RS02250 0.51 -0.7
487,203 - EX31_RS02250 0.51 +0.7
487,211 + EX31_RS02250 0.52 +0.4
487,228 + EX31_RS02250 0.54 -0.0
487,228 + EX31_RS02250 0.54 -1.8
487,256 - EX31_RS02250 0.57 -0.3
487,271 - EX31_RS02250 0.58 +0.7
487,356 - EX31_RS02250 0.68 -1.1
487,356 - EX31_RS02250 0.68 +0.2
487,381 + EX31_RS02250 0.71 +0.5
487,415 + EX31_RS02250 0.74 -0.6
487,416 - EX31_RS02250 0.75 +0.3
487,543 - EX31_RS02250 0.89 -1.9
487,545 + EX31_RS02250 0.89 +0.2
487,545 + EX31_RS02250 0.89 -2.0
487,545 + EX31_RS02250 0.89 +0.1
487,545 + EX31_RS02250 0.89 -1.3
487,546 - EX31_RS02250 0.89 -0.4
487,638 + +1.1
487,639 - +1.5
487,650 - +0.6
487,650 - -0.2
487,650 - -0.9
487,656 + -0.6
487,665 + -0.4
487,719 + -0.2
487,719 + -0.5
487,720 - -0.2
487,720 - +0.8
487,720 - -0.0
487,737 - +0.2
487,751 - +0.4
487,774 + -0.4
487,774 + -0.0
487,774 + -0.6
487,774 + -0.4
487,775 - -0.1
487,819 + -0.1
487,830 + +0.1
487,830 + -1.4
487,830 + -0.6
487,831 - -0.3
487,831 - -0.8
487,971 + EX31_RS02255 0.19 -1.5
488,081 - EX31_RS02255 0.31 +0.3
488,135 + EX31_RS02255 0.37 +0.1
488,429 + EX31_RS02255 0.70 +1.5
488,429 + EX31_RS02255 0.70 -1.1
488,430 - EX31_RS02255 0.70 -0.1
488,430 - EX31_RS02255 0.70 +0.1
488,542 + EX31_RS02255 0.83 +0.9
488,542 + EX31_RS02255 0.83 -0.2
488,543 - EX31_RS02255 0.83 -1.5
488,586 + EX31_RS02255 0.88 -0.0
488,586 + EX31_RS02255 0.88 +1.0
488,586 + EX31_RS02255 0.88 -0.2
488,586 + EX31_RS02255 0.88 +0.5
488,586 + EX31_RS02255 0.88 -0.3
488,586 + EX31_RS02255 0.88 -0.6
488,586 + EX31_RS02255 0.88 +0.3
488,586 + EX31_RS02255 0.88 +0.3
488,586 + EX31_RS02255 0.88 -0.6
488,586 + EX31_RS02255 0.88 -0.2
488,586 + EX31_RS02255 0.88 -0.3
488,587 - EX31_RS02255 0.88 -0.9
488,587 - EX31_RS02255 0.88 -1.3
488,587 - EX31_RS02255 0.88 +0.0
488,587 - EX31_RS02255 0.88 -0.3
488,587 - EX31_RS02255 0.88 +0.2
488,587 - EX31_RS02255 0.88 -0.2
488,587 - EX31_RS02255 0.88 +0.0
488,601 + EX31_RS02255 0.90 -0.4
488,633 - -0.1
488,633 - -0.3

Or see this region's nucleotide sequence