Strain Fitness in Rahnella sp. WP5 around EX31_RS21310

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21300 and EX31_RS21305 are separated by 3 nucleotidesEX31_RS21305 and EX31_RS21310 overlap by 1 nucleotidesEX31_RS21310 and EX31_RS21315 are separated by 430 nucleotidesEX31_RS21315 and EX31_RS21320 are separated by 103 nucleotidesEX31_RS21320 and EX31_RS21325 are separated by 96 nucleotides EX31_RS21300: EX31_RS21300 - acyl carrier protein, at 901,351 to 901,608 _RS21300 EX31_RS21305: EX31_RS21305 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 901,612 to 902,424 _RS21305 EX31_RS21310: EX31_RS21310 - beta-ketoacyl synthase chain length factor, at 902,424 to 903,149 _RS21310 EX31_RS21315: EX31_RS21315 - tRNA-Asp, at 903,580 to 903,656 _RS21315 EX31_RS21320: EX31_RS21320 - 5S ribosomal RNA, at 903,760 to 903,875 _RS21320 EX31_RS21325: EX31_RS21325 - 23S ribosomal RNA, at 903,972 to 904,054 _RS21325 Position (kb) 902 903 904Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 901.486 kb on - strand, within EX31_RS21300at 901.576 kb on - strand, within EX31_RS21300at 901.586 kb on - strandat 901.593 kb on + strandat 901.593 kb on + strandat 901.594 kb on - strandat 901.594 kb on - strandat 901.614 kb on - strandat 901.614 kb on - strandat 901.614 kb on - strandat 901.614 kb on - strandat 901.614 kb on - strandat 901.624 kb on - strandat 901.633 kb on - strandat 901.711 kb on + strand, within EX31_RS21305at 901.729 kb on + strand, within EX31_RS21305at 901.730 kb on - strand, within EX31_RS21305at 901.730 kb on - strand, within EX31_RS21305at 901.746 kb on + strand, within EX31_RS21305at 901.903 kb on + strand, within EX31_RS21305at 901.904 kb on - strand, within EX31_RS21305at 901.931 kb on - strand, within EX31_RS21305at 901.996 kb on - strand, within EX31_RS21305at 901.996 kb on - strand, within EX31_RS21305at 902.004 kb on - strand, within EX31_RS21305at 902.017 kb on + strand, within EX31_RS21305at 902.017 kb on + strand, within EX31_RS21305at 902.018 kb on - strand, within EX31_RS21305at 902.030 kb on - strand, within EX31_RS21305at 902.102 kb on + strand, within EX31_RS21305at 902.102 kb on + strand, within EX31_RS21305at 902.103 kb on - strand, within EX31_RS21305at 902.103 kb on - strand, within EX31_RS21305at 902.172 kb on + strand, within EX31_RS21305at 902.299 kb on - strand, within EX31_RS21305at 902.299 kb on - strand, within EX31_RS21305at 902.307 kb on + strand, within EX31_RS21305at 902.308 kb on - strand, within EX31_RS21305at 902.310 kb on + strand, within EX31_RS21305at 902.311 kb on - strand, within EX31_RS21305at 902.311 kb on - strand, within EX31_RS21305at 902.450 kb on + strandat 902.451 kb on - strandat 902.451 kb on - strandat 902.562 kb on - strand, within EX31_RS21310at 902.580 kb on - strand, within EX31_RS21310at 902.595 kb on + strand, within EX31_RS21310at 902.596 kb on - strand, within EX31_RS21310at 902.596 kb on - strand, within EX31_RS21310at 902.596 kb on - strand, within EX31_RS21310at 902.596 kb on - strand, within EX31_RS21310at 902.598 kb on + strand, within EX31_RS21310at 902.605 kb on - strand, within EX31_RS21310at 902.611 kb on + strand, within EX31_RS21310at 902.611 kb on + strand, within EX31_RS21310at 902.612 kb on - strand, within EX31_RS21310at 902.616 kb on + strand, within EX31_RS21310at 902.616 kb on + strand, within EX31_RS21310at 902.617 kb on - strand, within EX31_RS21310at 902.644 kb on + strand, within EX31_RS21310at 902.644 kb on + strand, within EX31_RS21310at 902.644 kb on + strand, within EX31_RS21310at 902.644 kb on + strand, within EX31_RS21310at 902.644 kb on + strand, within EX31_RS21310at 902.644 kb on + strand, within EX31_RS21310at 902.644 kb on + strand, within EX31_RS21310at 902.645 kb on - strand, within EX31_RS21310at 902.645 kb on - strand, within EX31_RS21310at 902.645 kb on - strand, within EX31_RS21310at 902.645 kb on - strand, within EX31_RS21310at 902.646 kb on + strand, within EX31_RS21310at 902.646 kb on + strand, within EX31_RS21310at 902.646 kb on + strand, within EX31_RS21310at 902.646 kb on + strand, within EX31_RS21310at 902.647 kb on - strand, within EX31_RS21310at 902.647 kb on - strand, within EX31_RS21310at 902.647 kb on - strand, within EX31_RS21310at 902.647 kb on - strand, within EX31_RS21310at 902.647 kb on - strand, within EX31_RS21310at 902.647 kb on - strand, within EX31_RS21310at 902.647 kb on - strand, within EX31_RS21310at 902.648 kb on + strand, within EX31_RS21310at 902.648 kb on + strand, within EX31_RS21310at 902.649 kb on - strand, within EX31_RS21310at 902.757 kb on + strand, within EX31_RS21310at 902.758 kb on - strand, within EX31_RS21310at 902.789 kb on + strand, within EX31_RS21310at 902.789 kb on + strand, within EX31_RS21310at 902.813 kb on + strand, within EX31_RS21310at 902.814 kb on - strand, within EX31_RS21310at 902.816 kb on + strand, within EX31_RS21310at 902.816 kb on + strand, within EX31_RS21310at 902.817 kb on - strand, within EX31_RS21310at 902.817 kb on - strand, within EX31_RS21310at 902.817 kb on - strand, within EX31_RS21310at 902.817 kb on - strand, within EX31_RS21310at 902.820 kb on + strand, within EX31_RS21310at 902.820 kb on + strand, within EX31_RS21310at 902.888 kb on + strand, within EX31_RS21310at 902.888 kb on + strand, within EX31_RS21310at 902.931 kb on + strand, within EX31_RS21310at 902.931 kb on + strand, within EX31_RS21310at 902.931 kb on + strand, within EX31_RS21310at 902.932 kb on - strand, within EX31_RS21310at 902.932 kb on - strand, within EX31_RS21310at 902.932 kb on - strand, within EX31_RS21310at 902.932 kb on - strand, within EX31_RS21310at 902.932 kb on - strand, within EX31_RS21310at 902.932 kb on - strand, within EX31_RS21310at 902.932 kb on - strand, within EX31_RS21310at 902.932 kb on - strand, within EX31_RS21310at 902.932 kb on - strand, within EX31_RS21310at 902.940 kb on - strand, within EX31_RS21310at 903.050 kb on + strand, within EX31_RS21310at 903.096 kb on - strandat 903.129 kb on + strandat 903.130 kb on - strandat 903.275 kb on + strandat 903.278 kb on + strandat 903.278 kb on + strandat 903.385 kb on + strandat 903.488 kb on - strandat 903.570 kb on - strandat 903.570 kb on - strandat 903.570 kb on - strandat 903.577 kb on - strandat 903.577 kb on - strandat 903.577 kb on - strandat 903.577 kb on - strandat 903.577 kb on - strandat 903.577 kb on - strandat 903.744 kb on - strandat 903.744 kb on - strandat 903.747 kb on - strandat 903.775 kb on - strand, within EX31_RS21320at 903.775 kb on - strand, within EX31_RS21320

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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901,486 - EX31_RS21300 0.52 +0.5
901,576 - EX31_RS21300 0.87 +1.2
901,586 - +0.4
901,593 + +0.0
901,593 + +0.7
901,594 - +1.4
901,594 - +0.2
901,614 - +0.1
901,614 - -0.2
901,614 - +0.6
901,614 - +0.1
901,614 - -0.4
901,624 - +0.6
901,633 - +0.2
901,711 + EX31_RS21305 0.12 -0.9
901,729 + EX31_RS21305 0.14 +1.0
901,730 - EX31_RS21305 0.15 +0.8
901,730 - EX31_RS21305 0.15 +0.5
901,746 + EX31_RS21305 0.16 -0.2
901,903 + EX31_RS21305 0.36 -0.5
901,904 - EX31_RS21305 0.36 +1.0
901,931 - EX31_RS21305 0.39 +0.7
901,996 - EX31_RS21305 0.47 -0.8
901,996 - EX31_RS21305 0.47 -0.1
902,004 - EX31_RS21305 0.48 -1.1
902,017 + EX31_RS21305 0.50 -0.8
902,017 + EX31_RS21305 0.50 +0.9
902,018 - EX31_RS21305 0.50 -0.4
902,030 - EX31_RS21305 0.51 +1.0
902,102 + EX31_RS21305 0.60 +0.1
902,102 + EX31_RS21305 0.60 -0.4
902,103 - EX31_RS21305 0.60 +0.6
902,103 - EX31_RS21305 0.60 -0.7
902,172 + EX31_RS21305 0.69 +0.1
902,299 - EX31_RS21305 0.85 +0.0
902,299 - EX31_RS21305 0.85 +0.6
902,307 + EX31_RS21305 0.85 +0.6
902,308 - EX31_RS21305 0.86 -0.0
902,310 + EX31_RS21305 0.86 -3.2
902,311 - EX31_RS21305 0.86 +1.0
902,311 - EX31_RS21305 0.86 -0.1
902,450 + +0.3
902,451 - +0.6
902,451 - +0.3
902,562 - EX31_RS21310 0.19 +0.6
902,580 - EX31_RS21310 0.21 +0.7
902,595 + EX31_RS21310 0.24 +0.9
902,596 - EX31_RS21310 0.24 -0.8
902,596 - EX31_RS21310 0.24 +0.8
902,596 - EX31_RS21310 0.24 +1.4
902,596 - EX31_RS21310 0.24 -2.0
902,598 + EX31_RS21310 0.24 +1.1
902,605 - EX31_RS21310 0.25 -1.6
902,611 + EX31_RS21310 0.26 -0.1
902,611 + EX31_RS21310 0.26 -0.0
902,612 - EX31_RS21310 0.26 +1.2
902,616 + EX31_RS21310 0.26 -0.3
902,616 + EX31_RS21310 0.26 -1.7
902,617 - EX31_RS21310 0.27 -0.4
902,644 + EX31_RS21310 0.30 -0.5
902,644 + EX31_RS21310 0.30 -0.2
902,644 + EX31_RS21310 0.30 -0.0
902,644 + EX31_RS21310 0.30 +0.5
902,644 + EX31_RS21310 0.30 -0.4
902,644 + EX31_RS21310 0.30 -0.9
902,644 + EX31_RS21310 0.30 +0.1
902,645 - EX31_RS21310 0.30 -0.5
902,645 - EX31_RS21310 0.30 -0.6
902,645 - EX31_RS21310 0.30 -0.9
902,645 - EX31_RS21310 0.30 -0.4
902,646 + EX31_RS21310 0.31 +0.1
902,646 + EX31_RS21310 0.31 -0.1
902,646 + EX31_RS21310 0.31 +0.6
902,646 + EX31_RS21310 0.31 -0.4
902,647 - EX31_RS21310 0.31 -0.1
902,647 - EX31_RS21310 0.31 +0.1
902,647 - EX31_RS21310 0.31 +1.3
902,647 - EX31_RS21310 0.31 +0.3
902,647 - EX31_RS21310 0.31 +1.7
902,647 - EX31_RS21310 0.31 -1.1
902,647 - EX31_RS21310 0.31 +0.2
902,648 + EX31_RS21310 0.31 +0.5
902,648 + EX31_RS21310 0.31 +0.7
902,649 - EX31_RS21310 0.31 +0.6
902,757 + EX31_RS21310 0.46 -0.2
902,758 - EX31_RS21310 0.46 +0.8
902,789 + EX31_RS21310 0.50 -0.9
902,789 + EX31_RS21310 0.50 +0.9
902,813 + EX31_RS21310 0.54 -2.6
902,814 - EX31_RS21310 0.54 -1.4
902,816 + EX31_RS21310 0.54 +0.4
902,816 + EX31_RS21310 0.54 +1.6
902,817 - EX31_RS21310 0.54 +0.8
902,817 - EX31_RS21310 0.54 +1.1
902,817 - EX31_RS21310 0.54 +0.7
902,817 - EX31_RS21310 0.54 +0.7
902,820 + EX31_RS21310 0.55 -0.3
902,820 + EX31_RS21310 0.55 -0.8
902,888 + EX31_RS21310 0.64 -0.6
902,888 + EX31_RS21310 0.64 +1.3
902,931 + EX31_RS21310 0.70 +0.6
902,931 + EX31_RS21310 0.70 +0.4
902,931 + EX31_RS21310 0.70 +2.4
902,932 - EX31_RS21310 0.70 +0.5
902,932 - EX31_RS21310 0.70 -0.9
902,932 - EX31_RS21310 0.70 -0.3
902,932 - EX31_RS21310 0.70 +0.4
902,932 - EX31_RS21310 0.70 +0.2
902,932 - EX31_RS21310 0.70 +0.6
902,932 - EX31_RS21310 0.70 +1.1
902,932 - EX31_RS21310 0.70 +0.2
902,932 - EX31_RS21310 0.70 +0.2
902,940 - EX31_RS21310 0.71 +0.7
903,050 + EX31_RS21310 0.86 +0.2
903,096 - +0.2
903,129 + +0.3
903,130 - +0.5
903,275 + -0.8
903,278 + +0.8
903,278 + -1.0
903,385 + -0.2
903,488 - -0.5
903,570 - +0.6
903,570 - +0.9
903,570 - -0.1
903,577 - -0.0
903,577 - +0.1
903,577 - +0.1
903,577 - -0.0
903,577 - -0.1
903,577 - -0.0
903,744 - +0.1
903,744 - +0.3
903,747 - +0.2
903,775 - EX31_RS21320 0.13 +0.2
903,775 - EX31_RS21320 0.13 +0.5

Or see this region's nucleotide sequence