Strain Fitness in Rahnella sp. WP5 around EX31_RS02910

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02905 and EX31_RS02910 are separated by 17 nucleotidesEX31_RS02910 and EX31_RS02915 are separated by 75 nucleotides EX31_RS02905: EX31_RS02905 - right-handed parallel beta-helix repeat-containing protein, at 57,807 to 59,498 _RS02905 EX31_RS02910: EX31_RS02910 - hypothetical protein, at 59,516 to 60,754 _RS02910 EX31_RS02915: EX31_RS02915 - glycosyltransferase family 4 protein, at 60,830 to 61,813 _RS02915 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 58.553 kb on + strand, within EX31_RS02905at 58.652 kb on - strand, within EX31_RS02905at 58.654 kb on - strand, within EX31_RS02905at 58.678 kb on - strand, within EX31_RS02905at 58.754 kb on - strand, within EX31_RS02905at 58.806 kb on + strand, within EX31_RS02905at 58.934 kb on + strand, within EX31_RS02905at 58.937 kb on + strand, within EX31_RS02905at 59.052 kb on + strand, within EX31_RS02905at 59.136 kb on - strand, within EX31_RS02905at 59.136 kb on - strand, within EX31_RS02905at 59.138 kb on + strand, within EX31_RS02905at 59.138 kb on + strand, within EX31_RS02905at 59.226 kb on - strand, within EX31_RS02905at 59.261 kb on + strand, within EX31_RS02905at 59.315 kb on - strand, within EX31_RS02905at 59.331 kb on + strandat 59.332 kb on - strandat 59.332 kb on - strandat 59.332 kb on - strandat 59.388 kb on + strandat 59.388 kb on + strandat 59.389 kb on - strandat 59.400 kb on - strandat 59.439 kb on + strandat 59.439 kb on + strandat 59.442 kb on + strandat 59.485 kb on - strandat 59.499 kb on - strandat 59.499 kb on - strandat 59.499 kb on - strandat 59.542 kb on + strandat 59.556 kb on - strandat 59.562 kb on - strandat 59.623 kb on + strandat 59.680 kb on - strand, within EX31_RS02910at 59.769 kb on + strand, within EX31_RS02910at 59.873 kb on + strand, within EX31_RS02910at 59.895 kb on - strand, within EX31_RS02910at 59.927 kb on - strand, within EX31_RS02910at 59.967 kb on - strand, within EX31_RS02910at 59.971 kb on + strand, within EX31_RS02910at 60.020 kb on - strand, within EX31_RS02910at 60.096 kb on - strand, within EX31_RS02910at 60.157 kb on - strand, within EX31_RS02910at 60.458 kb on - strand, within EX31_RS02910at 60.467 kb on - strand, within EX31_RS02910at 60.471 kb on + strand, within EX31_RS02910at 60.471 kb on + strand, within EX31_RS02910at 60.565 kb on - strand, within EX31_RS02910at 60.569 kb on - strand, within EX31_RS02910at 60.620 kb on - strand, within EX31_RS02910at 60.791 kb on - strandat 61.045 kb on + strand, within EX31_RS02915at 61.046 kb on - strand, within EX31_RS02915at 61.138 kb on - strand, within EX31_RS02915at 61.138 kb on - strand, within EX31_RS02915at 61.146 kb on - strand, within EX31_RS02915at 61.162 kb on + strand, within EX31_RS02915at 61.208 kb on - strand, within EX31_RS02915at 61.357 kb on + strand, within EX31_RS02915at 61.360 kb on - strand, within EX31_RS02915at 61.360 kb on - strand, within EX31_RS02915at 61.480 kb on + strand, within EX31_RS02915at 61.516 kb on + strand, within EX31_RS02915at 61.517 kb on - strand, within EX31_RS02915at 61.517 kb on - strand, within EX31_RS02915at 61.562 kb on + strand, within EX31_RS02915at 61.563 kb on - strand, within EX31_RS02915at 61.591 kb on + strand, within EX31_RS02915at 61.591 kb on + strand, within EX31_RS02915

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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58,553 + EX31_RS02905 0.44 -0.6
58,652 - EX31_RS02905 0.50 -0.6
58,654 - EX31_RS02905 0.50 +1.4
58,678 - EX31_RS02905 0.51 -0.5
58,754 - EX31_RS02905 0.56 +1.2
58,806 + EX31_RS02905 0.59 -0.3
58,934 + EX31_RS02905 0.67 +0.5
58,937 + EX31_RS02905 0.67 +0.9
59,052 + EX31_RS02905 0.74 +0.6
59,136 - EX31_RS02905 0.79 -0.4
59,136 - EX31_RS02905 0.79 +0.1
59,138 + EX31_RS02905 0.79 +0.6
59,138 + EX31_RS02905 0.79 +0.9
59,226 - EX31_RS02905 0.84 +0.4
59,261 + EX31_RS02905 0.86 -1.5
59,315 - EX31_RS02905 0.89 -0.7
59,331 + +0.2
59,332 - -0.2
59,332 - +0.7
59,332 - +0.1
59,388 + -0.9
59,388 + -0.7
59,389 - +0.1
59,400 - +0.4
59,439 + -0.4
59,439 + -0.7
59,442 + +0.7
59,485 - +0.1
59,499 - +0.2
59,499 - -2.6
59,499 - -0.3
59,542 + +0.0
59,556 - -0.7
59,562 - -0.1
59,623 + -1.5
59,680 - EX31_RS02910 0.13 +2.2
59,769 + EX31_RS02910 0.20 +0.2
59,873 + EX31_RS02910 0.29 +0.4
59,895 - EX31_RS02910 0.31 -0.1
59,927 - EX31_RS02910 0.33 -0.6
59,967 - EX31_RS02910 0.36 -0.3
59,971 + EX31_RS02910 0.37 -0.0
60,020 - EX31_RS02910 0.41 +0.8
60,096 - EX31_RS02910 0.47 +0.0
60,157 - EX31_RS02910 0.52 +1.1
60,458 - EX31_RS02910 0.76 +0.5
60,467 - EX31_RS02910 0.77 +1.1
60,471 + EX31_RS02910 0.77 -0.3
60,471 + EX31_RS02910 0.77 +0.3
60,565 - EX31_RS02910 0.85 +1.6
60,569 - EX31_RS02910 0.85 +1.0
60,620 - EX31_RS02910 0.89 -1.4
60,791 - -0.1
61,045 + EX31_RS02915 0.22 -0.4
61,046 - EX31_RS02915 0.22 +0.4
61,138 - EX31_RS02915 0.31 -0.1
61,138 - EX31_RS02915 0.31 -0.9
61,146 - EX31_RS02915 0.32 -1.6
61,162 + EX31_RS02915 0.34 +1.1
61,208 - EX31_RS02915 0.38 -0.4
61,357 + EX31_RS02915 0.54 -0.7
61,360 - EX31_RS02915 0.54 +0.9
61,360 - EX31_RS02915 0.54 +0.2
61,480 + EX31_RS02915 0.66 +0.2
61,516 + EX31_RS02915 0.70 +0.6
61,517 - EX31_RS02915 0.70 +0.2
61,517 - EX31_RS02915 0.70 -0.2
61,562 + EX31_RS02915 0.74 -0.8
61,563 - EX31_RS02915 0.74 +0.4
61,591 + EX31_RS02915 0.77 +1.0
61,591 + EX31_RS02915 0.77 -1.2

Or see this region's nucleotide sequence