Strain Fitness in Rahnella sp. WP5 around EX31_RS02120

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02115 and EX31_RS02120 are separated by 195 nucleotidesEX31_RS02120 and EX31_RS02125 are separated by 47 nucleotidesEX31_RS02125 and EX31_RS02130 overlap by 4 nucleotides EX31_RS02115: EX31_RS02115 - L-fucose:H+ symporter permease, at 462,657 to 463,895 _RS02115 EX31_RS02120: EX31_RS02120 - MFS transporter, at 464,091 to 465,296 _RS02120 EX31_RS02125: EX31_RS02125 - helix-turn-helix transcriptional regulator, at 465,344 to 466,054 _RS02125 EX31_RS02130: EX31_RS02130 - amino acid-binding protein, at 466,051 to 466,443 _RS02130 Position (kb) 464 465 466Strain fitness (log2 ratio) -2 -1 0 1at 463.230 kb on + strand, within EX31_RS02115at 463.230 kb on + strand, within EX31_RS02115at 463.231 kb on - strand, within EX31_RS02115at 463.231 kb on - strand, within EX31_RS02115at 463.250 kb on - strand, within EX31_RS02115at 463.389 kb on + strand, within EX31_RS02115at 463.428 kb on - strand, within EX31_RS02115at 463.428 kb on - strand, within EX31_RS02115at 463.428 kb on - strand, within EX31_RS02115at 463.428 kb on - strand, within EX31_RS02115at 463.431 kb on + strand, within EX31_RS02115at 463.431 kb on + strand, within EX31_RS02115at 463.432 kb on - strand, within EX31_RS02115at 463.432 kb on - strand, within EX31_RS02115at 463.432 kb on - strand, within EX31_RS02115at 463.432 kb on - strand, within EX31_RS02115at 463.432 kb on - strand, within EX31_RS02115at 463.432 kb on - strand, within EX31_RS02115at 463.432 kb on - strand, within EX31_RS02115at 463.476 kb on + strand, within EX31_RS02115at 463.477 kb on - strand, within EX31_RS02115at 463.505 kb on + strand, within EX31_RS02115at 463.573 kb on - strand, within EX31_RS02115at 463.587 kb on - strand, within EX31_RS02115at 463.587 kb on - strand, within EX31_RS02115at 463.623 kb on - strand, within EX31_RS02115at 463.662 kb on - strand, within EX31_RS02115at 463.803 kb on + strandat 463.803 kb on + strandat 463.804 kb on - strandat 463.804 kb on - strandat 463.822 kb on - strandat 463.837 kb on + strandat 463.837 kb on + strandat 463.838 kb on - strandat 463.838 kb on - strandat 463.838 kb on - strandat 463.838 kb on - strandat 463.838 kb on - strandat 463.838 kb on - strandat 463.907 kb on + strandat 463.950 kb on - strandat 464.044 kb on + strandat 464.044 kb on + strandat 464.044 kb on + strandat 464.045 kb on - strandat 464.045 kb on - strandat 464.045 kb on - strandat 464.056 kb on + strandat 464.056 kb on + strandat 464.057 kb on - strandat 464.058 kb on + strandat 464.059 kb on - strandat 464.059 kb on - strandat 464.404 kb on + strand, within EX31_RS02120at 464.404 kb on + strand, within EX31_RS02120at 464.600 kb on - strand, within EX31_RS02120at 464.600 kb on - strand, within EX31_RS02120at 464.641 kb on + strand, within EX31_RS02120at 464.641 kb on + strand, within EX31_RS02120at 464.641 kb on + strand, within EX31_RS02120at 464.641 kb on + strand, within EX31_RS02120at 464.717 kb on + strand, within EX31_RS02120at 464.835 kb on + strand, within EX31_RS02120at 464.835 kb on + strand, within EX31_RS02120at 464.835 kb on + strand, within EX31_RS02120at 464.836 kb on - strand, within EX31_RS02120at 464.836 kb on - strand, within EX31_RS02120at 464.856 kb on - strand, within EX31_RS02120at 464.856 kb on - strand, within EX31_RS02120at 464.856 kb on - strand, within EX31_RS02120at 464.933 kb on + strand, within EX31_RS02120at 464.933 kb on + strand, within EX31_RS02120at 464.996 kb on - strand, within EX31_RS02120at 465.016 kb on + strand, within EX31_RS02120at 465.016 kb on + strand, within EX31_RS02120at 465.016 kb on + strand, within EX31_RS02120at 465.016 kb on + strand, within EX31_RS02120at 465.016 kb on + strand, within EX31_RS02120at 465.016 kb on + strand, within EX31_RS02120at 465.052 kb on + strand, within EX31_RS02120at 465.053 kb on - strand, within EX31_RS02120at 465.281 kb on + strandat 465.282 kb on - strandat 465.294 kb on + strandat 465.295 kb on - strandat 465.295 kb on - strandat 465.295 kb on - strandat 465.295 kb on - strandat 465.295 kb on - strandat 465.295 kb on - strandat 465.332 kb on + strandat 465.461 kb on + strand, within EX31_RS02125at 465.646 kb on - strand, within EX31_RS02125at 465.681 kb on + strand, within EX31_RS02125at 465.682 kb on - strand, within EX31_RS02125at 465.740 kb on - strand, within EX31_RS02125at 465.740 kb on - strand, within EX31_RS02125at 465.801 kb on + strand, within EX31_RS02125at 465.802 kb on - strand, within EX31_RS02125at 465.802 kb on - strand, within EX31_RS02125at 465.802 kb on - strand, within EX31_RS02125at 465.952 kb on + strand, within EX31_RS02125at 465.975 kb on - strand, within EX31_RS02125at 465.975 kb on - strand, within EX31_RS02125at 466.119 kb on + strand, within EX31_RS02130at 466.120 kb on - strand, within EX31_RS02130at 466.142 kb on + strand, within EX31_RS02130at 466.143 kb on - strand, within EX31_RS02130at 466.143 kb on - strand, within EX31_RS02130at 466.148 kb on - strand, within EX31_RS02130

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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463,230 + EX31_RS02115 0.46 -0.7
463,230 + EX31_RS02115 0.46 +0.1
463,231 - EX31_RS02115 0.46 +0.6
463,231 - EX31_RS02115 0.46 +0.7
463,250 - EX31_RS02115 0.48 -0.4
463,389 + EX31_RS02115 0.59 +0.3
463,428 - EX31_RS02115 0.62 -0.2
463,428 - EX31_RS02115 0.62 +1.1
463,428 - EX31_RS02115 0.62 +1.1
463,428 - EX31_RS02115 0.62 -0.9
463,431 + EX31_RS02115 0.62 +0.0
463,431 + EX31_RS02115 0.62 -0.9
463,432 - EX31_RS02115 0.63 -0.1
463,432 - EX31_RS02115 0.63 +0.2
463,432 - EX31_RS02115 0.63 -0.4
463,432 - EX31_RS02115 0.63 -0.4
463,432 - EX31_RS02115 0.63 -1.5
463,432 - EX31_RS02115 0.63 +0.8
463,432 - EX31_RS02115 0.63 +0.3
463,476 + EX31_RS02115 0.66 -0.5
463,477 - EX31_RS02115 0.66 -0.4
463,505 + EX31_RS02115 0.68 -0.2
463,573 - EX31_RS02115 0.74 -1.1
463,587 - EX31_RS02115 0.75 +0.1
463,587 - EX31_RS02115 0.75 +1.0
463,623 - EX31_RS02115 0.78 -0.8
463,662 - EX31_RS02115 0.81 -0.4
463,803 + -2.6
463,803 + -0.6
463,804 - +0.1
463,804 - -0.1
463,822 - +0.1
463,837 + -1.5
463,837 + -0.1
463,838 - -0.1
463,838 - -0.4
463,838 - -2.3
463,838 - +0.3
463,838 - +0.1
463,838 - -0.1
463,907 + +0.1
463,950 - +0.7
464,044 + +0.2
464,044 + +0.3
464,044 + -0.4
464,045 - -1.1
464,045 - -0.0
464,045 - -0.5
464,056 + -0.3
464,056 + -2.0
464,057 - -0.1
464,058 + +0.7
464,059 - -0.1
464,059 - -0.6
464,404 + EX31_RS02120 0.26 +0.4
464,404 + EX31_RS02120 0.26 +0.1
464,600 - EX31_RS02120 0.42 +0.1
464,600 - EX31_RS02120 0.42 -0.3
464,641 + EX31_RS02120 0.46 +0.3
464,641 + EX31_RS02120 0.46 -0.4
464,641 + EX31_RS02120 0.46 -0.5
464,641 + EX31_RS02120 0.46 +1.1
464,717 + EX31_RS02120 0.52 -0.4
464,835 + EX31_RS02120 0.62 -0.5
464,835 + EX31_RS02120 0.62 +0.1
464,835 + EX31_RS02120 0.62 -2.0
464,836 - EX31_RS02120 0.62 -0.2
464,836 - EX31_RS02120 0.62 +0.3
464,856 - EX31_RS02120 0.63 -1.8
464,856 - EX31_RS02120 0.63 -0.4
464,856 - EX31_RS02120 0.63 -0.1
464,933 + EX31_RS02120 0.70 +0.3
464,933 + EX31_RS02120 0.70 +0.2
464,996 - EX31_RS02120 0.75 -0.5
465,016 + EX31_RS02120 0.77 +0.2
465,016 + EX31_RS02120 0.77 +0.6
465,016 + EX31_RS02120 0.77 +0.0
465,016 + EX31_RS02120 0.77 -0.7
465,016 + EX31_RS02120 0.77 -0.4
465,016 + EX31_RS02120 0.77 -0.5
465,052 + EX31_RS02120 0.80 -1.2
465,053 - EX31_RS02120 0.80 -1.1
465,281 + -0.9
465,282 - -0.3
465,294 + -0.9
465,295 - -1.2
465,295 - -1.4
465,295 - +0.9
465,295 - -0.5
465,295 - +0.1
465,295 - +0.2
465,332 + -0.0
465,461 + EX31_RS02125 0.16 -0.7
465,646 - EX31_RS02125 0.42 +0.5
465,681 + EX31_RS02125 0.47 +0.9
465,682 - EX31_RS02125 0.48 +0.4
465,740 - EX31_RS02125 0.56 +0.9
465,740 - EX31_RS02125 0.56 -0.1
465,801 + EX31_RS02125 0.64 +0.6
465,802 - EX31_RS02125 0.64 -0.3
465,802 - EX31_RS02125 0.64 +1.0
465,802 - EX31_RS02125 0.64 +0.7
465,952 + EX31_RS02125 0.86 -0.6
465,975 - EX31_RS02125 0.89 +0.3
465,975 - EX31_RS02125 0.89 -0.1
466,119 + EX31_RS02130 0.17 -0.6
466,120 - EX31_RS02130 0.18 -1.1
466,142 + EX31_RS02130 0.23 +0.5
466,143 - EX31_RS02130 0.23 -0.8
466,143 - EX31_RS02130 0.23 -2.5
466,148 - EX31_RS02130 0.25 -1.0

Or see this region's nucleotide sequence