Experiment: NL-CCM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19255 and EX31_RS19260 are separated by 17 nucleotides EX31_RS19260 and EX31_RS19265 are separated by 50 nucleotides
EX31_RS19255: EX31_RS19255 - HlyD family efflux transporter periplasmic adaptor subunit, at 450,925 to 452,094
_RS19255
EX31_RS19260: EX31_RS19260 - type I secretion system permease/ATPase, at 452,112 to 454,289
_RS19260
EX31_RS19265: EX31_RS19265 - TolC family outer membrane protein, at 454,340 to 455,716
_RS19265
Position (kb) 452
453
454
455 Strain fitness (log2 ratio) -1
0
1
2 at 451.135 kb on - strand, within EX31_RS19255 at 451.175 kb on + strand, within EX31_RS19255 at 451.176 kb on - strand, within EX31_RS19255 at 451.190 kb on + strand, within EX31_RS19255 at 451.190 kb on + strand, within EX31_RS19255 at 451.190 kb on + strand, within EX31_RS19255 at 451.190 kb on + strand, within EX31_RS19255 at 451.191 kb on - strand, within EX31_RS19255 at 451.191 kb on - strand, within EX31_RS19255 at 451.191 kb on - strand, within EX31_RS19255 at 451.191 kb on - strand, within EX31_RS19255 at 451.232 kb on + strand, within EX31_RS19255 at 451.232 kb on + strand, within EX31_RS19255 at 451.232 kb on + strand, within EX31_RS19255 at 451.232 kb on + strand, within EX31_RS19255 at 451.233 kb on - strand, within EX31_RS19255 at 451.233 kb on - strand, within EX31_RS19255 at 451.233 kb on - strand, within EX31_RS19255 at 451.233 kb on - strand, within EX31_RS19255 at 451.251 kb on + strand, within EX31_RS19255 at 451.354 kb on - strand, within EX31_RS19255 at 451.376 kb on + strand, within EX31_RS19255 at 451.488 kb on + strand, within EX31_RS19255 at 451.633 kb on - strand, within EX31_RS19255 at 451.659 kb on + strand, within EX31_RS19255 at 451.660 kb on - strand, within EX31_RS19255 at 451.666 kb on + strand, within EX31_RS19255 at 451.670 kb on + strand, within EX31_RS19255 at 451.670 kb on + strand, within EX31_RS19255 at 451.670 kb on + strand, within EX31_RS19255 at 451.670 kb on + strand, within EX31_RS19255 at 451.671 kb on - strand, within EX31_RS19255 at 451.671 kb on - strand, within EX31_RS19255 at 451.671 kb on - strand, within EX31_RS19255 at 451.671 kb on - strand, within EX31_RS19255 at 451.671 kb on - strand, within EX31_RS19255 at 451.671 kb on - strand, within EX31_RS19255 at 451.671 kb on - strand, within EX31_RS19255 at 451.671 kb on - strand, within EX31_RS19255 at 451.671 kb on - strand, within EX31_RS19255 at 451.672 kb on + strand, within EX31_RS19255 at 451.673 kb on - strand, within EX31_RS19255 at 451.673 kb on - strand, within EX31_RS19255 at 451.673 kb on - strand, within EX31_RS19255 at 451.673 kb on - strand, within EX31_RS19255 at 451.673 kb on - strand, within EX31_RS19255 at 451.673 kb on - strand, within EX31_RS19255 at 451.673 kb on - strand, within EX31_RS19255 at 451.777 kb on + strand, within EX31_RS19255 at 451.777 kb on + strand, within EX31_RS19255 at 451.778 kb on - strand, within EX31_RS19255 at 451.778 kb on - strand, within EX31_RS19255 at 451.778 kb on - strand, within EX31_RS19255 at 451.778 kb on - strand, within EX31_RS19255 at 451.966 kb on + strand, within EX31_RS19255 at 451.966 kb on + strand, within EX31_RS19255 at 451.967 kb on - strand, within EX31_RS19255 at 452.133 kb on - strand at 452.175 kb on + strand at 452.309 kb on + strand at 452.309 kb on + strand at 452.309 kb on + strand at 452.309 kb on + strand at 452.309 kb on + strand at 452.309 kb on + strand at 452.309 kb on + strand at 452.309 kb on + strand at 452.310 kb on - strand at 452.310 kb on - strand at 452.310 kb on - strand at 452.310 kb on - strand at 452.310 kb on - strand at 452.310 kb on - strand at 452.310 kb on - strand at 452.310 kb on - strand at 452.310 kb on - strand at 452.313 kb on + strand at 452.313 kb on + strand at 452.313 kb on + strand at 452.314 kb on - strand at 452.314 kb on - strand at 452.314 kb on - strand at 452.314 kb on - strand at 452.314 kb on - strand at 452.314 kb on - strand at 452.314 kb on - strand at 452.314 kb on - strand at 452.314 kb on - strand at 452.329 kb on + strand at 452.330 kb on - strand, within EX31_RS19260 at 452.516 kb on + strand, within EX31_RS19260 at 452.516 kb on + strand, within EX31_RS19260 at 452.516 kb on + strand, within EX31_RS19260 at 452.517 kb on - strand, within EX31_RS19260 at 452.517 kb on - strand, within EX31_RS19260 at 452.517 kb on - strand, within EX31_RS19260 at 452.654 kb on + strand, within EX31_RS19260 at 452.654 kb on + strand, within EX31_RS19260 at 452.830 kb on + strand, within EX31_RS19260 at 452.831 kb on - strand, within EX31_RS19260 at 452.831 kb on - strand, within EX31_RS19260 at 452.831 kb on - strand, within EX31_RS19260 at 452.831 kb on - strand, within EX31_RS19260 at 452.831 kb on - strand, within EX31_RS19260 at 452.836 kb on + strand, within EX31_RS19260 at 452.836 kb on + strand, within EX31_RS19260 at 452.836 kb on + strand, within EX31_RS19260 at 452.837 kb on - strand, within EX31_RS19260 at 452.837 kb on - strand, within EX31_RS19260 at 452.837 kb on - strand, within EX31_RS19260 at 452.837 kb on - strand, within EX31_RS19260 at 452.837 kb on - strand, within EX31_RS19260 at 452.847 kb on - strand, within EX31_RS19260 at 453.073 kb on + strand, within EX31_RS19260 at 453.074 kb on - strand, within EX31_RS19260 at 453.074 kb on - strand, within EX31_RS19260 at 453.101 kb on - strand, within EX31_RS19260 at 453.101 kb on - strand, within EX31_RS19260 at 453.215 kb on - strand, within EX31_RS19260 at 453.299 kb on + strand, within EX31_RS19260 at 453.300 kb on - strand, within EX31_RS19260 at 453.513 kb on - strand, within EX31_RS19260 at 453.513 kb on - strand, within EX31_RS19260 at 453.552 kb on - strand, within EX31_RS19260 at 453.626 kb on + strand, within EX31_RS19260 at 453.627 kb on - strand, within EX31_RS19260 at 453.627 kb on - strand, within EX31_RS19260 at 453.646 kb on + strand, within EX31_RS19260 at 453.646 kb on + strand, within EX31_RS19260 at 453.646 kb on + strand, within EX31_RS19260 at 453.646 kb on + strand, within EX31_RS19260 at 453.646 kb on + strand, within EX31_RS19260 at 453.646 kb on + strand, within EX31_RS19260 at 453.647 kb on - strand, within EX31_RS19260 at 453.647 kb on - strand, within EX31_RS19260 at 453.647 kb on - strand, within EX31_RS19260 at 453.647 kb on - strand, within EX31_RS19260 at 453.647 kb on - strand, within EX31_RS19260 at 453.647 kb on - strand, within EX31_RS19260 at 453.647 kb on - strand, within EX31_RS19260 at 453.647 kb on - strand, within EX31_RS19260 at 453.647 kb on - strand, within EX31_RS19260 at 453.647 kb on - strand, within EX31_RS19260 at 453.727 kb on + strand, within EX31_RS19260 at 453.728 kb on - strand, within EX31_RS19260 at 453.728 kb on - strand, within EX31_RS19260 at 453.780 kb on - strand, within EX31_RS19260 at 453.963 kb on + strand, within EX31_RS19260 at 453.963 kb on + strand, within EX31_RS19260 at 453.964 kb on - strand, within EX31_RS19260 at 453.964 kb on - strand, within EX31_RS19260 at 453.988 kb on + strand, within EX31_RS19260 at 453.988 kb on + strand, within EX31_RS19260 at 454.049 kb on + strand, within EX31_RS19260 at 454.050 kb on - strand, within EX31_RS19260 at 454.050 kb on - strand, within EX31_RS19260 at 454.050 kb on - strand, within EX31_RS19260 at 454.062 kb on + strand, within EX31_RS19260 at 454.211 kb on + strand at 454.283 kb on + strand at 454.319 kb on + strand at 454.341 kb on + strand at 454.341 kb on + strand at 454.342 kb on - strand at 454.389 kb on - strand at 454.389 kb on - strand at 454.389 kb on - strand at 454.393 kb on + strand at 454.393 kb on + strand at 454.393 kb on + strand at 454.393 kb on + strand at 454.394 kb on - strand at 454.394 kb on - strand at 454.449 kb on + strand at 454.449 kb on + strand at 454.449 kb on + strand at 454.450 kb on - strand at 454.472 kb on - strand at 454.536 kb on + strand, within EX31_RS19265 at 454.536 kb on + strand, within EX31_RS19265 at 454.536 kb on + strand, within EX31_RS19265 at 454.537 kb on - strand, within EX31_RS19265 at 454.537 kb on - strand, within EX31_RS19265 at 454.537 kb on - strand, within EX31_RS19265 at 454.561 kb on + strand, within EX31_RS19265 at 454.629 kb on + strand, within EX31_RS19265 at 454.629 kb on + strand, within EX31_RS19265 at 454.630 kb on - strand, within EX31_RS19265 at 454.630 kb on - strand, within EX31_RS19265 at 454.743 kb on + strand, within EX31_RS19265 at 454.743 kb on + strand, within EX31_RS19265 at 454.770 kb on - strand, within EX31_RS19265 at 454.820 kb on - strand, within EX31_RS19265 at 454.820 kb on - strand, within EX31_RS19265 at 454.820 kb on - strand, within EX31_RS19265 at 454.820 kb on - strand, within EX31_RS19265 at 454.820 kb on - strand, within EX31_RS19265 at 454.820 kb on - strand, within EX31_RS19265 at 454.870 kb on + strand, within EX31_RS19265 at 454.870 kb on + strand, within EX31_RS19265 at 454.871 kb on - strand, within EX31_RS19265 at 454.897 kb on + strand, within EX31_RS19265 at 455.055 kb on + strand, within EX31_RS19265 at 455.055 kb on + strand, within EX31_RS19265 at 455.229 kb on + strand, within EX31_RS19265 at 455.230 kb on - strand, within EX31_RS19265 at 455.230 kb on - strand, within EX31_RS19265 at 455.271 kb on + strand, within EX31_RS19265 at 455.271 kb on + strand, within EX31_RS19265 at 455.271 kb on + strand, within EX31_RS19265 at 455.272 kb on - strand, within EX31_RS19265 at 455.272 kb on - strand, within EX31_RS19265 at 455.280 kb on + strand, within EX31_RS19265
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM remove 451,135 - EX31_RS19255 0.18 -0.2 451,175 + EX31_RS19255 0.21 +0.2 451,176 - EX31_RS19255 0.21 +0.3 451,190 + EX31_RS19255 0.23 +0.6 451,190 + EX31_RS19255 0.23 +0.6 451,190 + EX31_RS19255 0.23 +1.5 451,190 + EX31_RS19255 0.23 +0.0 451,191 - EX31_RS19255 0.23 +0.8 451,191 - EX31_RS19255 0.23 -0.8 451,191 - EX31_RS19255 0.23 +0.6 451,191 - EX31_RS19255 0.23 -0.2 451,232 + EX31_RS19255 0.26 +0.0 451,232 + EX31_RS19255 0.26 +0.7 451,232 + EX31_RS19255 0.26 +1.4 451,232 + EX31_RS19255 0.26 +0.1 451,233 - EX31_RS19255 0.26 +0.4 451,233 - EX31_RS19255 0.26 +0.9 451,233 - EX31_RS19255 0.26 +1.0 451,233 - EX31_RS19255 0.26 +0.8 451,251 + EX31_RS19255 0.28 +0.4 451,354 - EX31_RS19255 0.37 +0.1 451,376 + EX31_RS19255 0.39 -0.6 451,488 + EX31_RS19255 0.48 +0.6 451,633 - EX31_RS19255 0.61 -0.4 451,659 + EX31_RS19255 0.63 +0.8 451,660 - EX31_RS19255 0.63 +1.2 451,666 + EX31_RS19255 0.63 +1.2 451,670 + EX31_RS19255 0.64 +0.5 451,670 + EX31_RS19255 0.64 +0.5 451,670 + EX31_RS19255 0.64 +1.2 451,670 + EX31_RS19255 0.64 +0.5 451,671 - EX31_RS19255 0.64 -1.6 451,671 - EX31_RS19255 0.64 +1.0 451,671 - EX31_RS19255 0.64 +0.3 451,671 - EX31_RS19255 0.64 +0.4 451,671 - EX31_RS19255 0.64 +0.2 451,671 - EX31_RS19255 0.64 +0.3 451,671 - EX31_RS19255 0.64 +0.7 451,671 - EX31_RS19255 0.64 +0.9 451,671 - EX31_RS19255 0.64 +1.4 451,672 + EX31_RS19255 0.64 +0.3 451,673 - EX31_RS19255 0.64 -1.0 451,673 - EX31_RS19255 0.64 +0.5 451,673 - EX31_RS19255 0.64 +1.0 451,673 - EX31_RS19255 0.64 -0.4 451,673 - EX31_RS19255 0.64 +0.9 451,673 - EX31_RS19255 0.64 +0.5 451,673 - EX31_RS19255 0.64 +1.3 451,777 + EX31_RS19255 0.73 -0.1 451,777 + EX31_RS19255 0.73 +0.4 451,778 - EX31_RS19255 0.73 -0.4 451,778 - EX31_RS19255 0.73 +1.2 451,778 - EX31_RS19255 0.73 +1.1 451,778 - EX31_RS19255 0.73 +1.0 451,966 + EX31_RS19255 0.89 +0.6 451,966 + EX31_RS19255 0.89 +0.3 451,967 - EX31_RS19255 0.89 +0.3 452,133 - +0.1 452,175 + +0.2 452,309 + -0.2 452,309 + +0.6 452,309 + +0.9 452,309 + +0.4 452,309 + +1.3 452,309 + -0.8 452,309 + -0.3 452,309 + +0.3 452,310 - +0.8 452,310 - +2.2 452,310 - +1.0 452,310 - +0.7 452,310 - +0.5 452,310 - +0.1 452,310 - -0.5 452,310 - +0.7 452,310 - +1.1 452,313 + +0.3 452,313 + -0.7 452,313 + -0.4 452,314 - +1.0 452,314 - +0.3 452,314 - +0.5 452,314 - +0.5 452,314 - +1.0 452,314 - +0.3 452,314 - +0.2 452,314 - +1.0 452,314 - -0.1 452,329 + -0.1 452,330 - EX31_RS19260 0.10 +0.1 452,516 + EX31_RS19260 0.19 +1.0 452,516 + EX31_RS19260 0.19 +0.9 452,516 + EX31_RS19260 0.19 +0.8 452,517 - EX31_RS19260 0.19 -0.7 452,517 - EX31_RS19260 0.19 +0.5 452,517 - EX31_RS19260 0.19 +0.1 452,654 + EX31_RS19260 0.25 +0.7 452,654 + EX31_RS19260 0.25 +1.2 452,830 + EX31_RS19260 0.33 +0.8 452,831 - EX31_RS19260 0.33 +1.0 452,831 - EX31_RS19260 0.33 -0.3 452,831 - EX31_RS19260 0.33 -0.4 452,831 - EX31_RS19260 0.33 +0.5 452,831 - EX31_RS19260 0.33 +0.3 452,836 + EX31_RS19260 0.33 +0.8 452,836 + EX31_RS19260 0.33 +1.1 452,836 + EX31_RS19260 0.33 -0.5 452,837 - EX31_RS19260 0.33 +0.4 452,837 - EX31_RS19260 0.33 +0.3 452,837 - EX31_RS19260 0.33 +0.4 452,837 - EX31_RS19260 0.33 +1.3 452,837 - EX31_RS19260 0.33 +0.4 452,847 - EX31_RS19260 0.34 +0.4 453,073 + EX31_RS19260 0.44 +0.5 453,074 - EX31_RS19260 0.44 -1.4 453,074 - EX31_RS19260 0.44 +1.3 453,101 - EX31_RS19260 0.45 +0.5 453,101 - EX31_RS19260 0.45 +0.1 453,215 - EX31_RS19260 0.51 -0.6 453,299 + EX31_RS19260 0.54 +0.1 453,300 - EX31_RS19260 0.55 +0.7 453,513 - EX31_RS19260 0.64 +0.5 453,513 - EX31_RS19260 0.64 -0.0 453,552 - EX31_RS19260 0.66 -0.3 453,626 + EX31_RS19260 0.70 +1.2 453,627 - EX31_RS19260 0.70 +0.5 453,627 - EX31_RS19260 0.70 -0.3 453,646 + EX31_RS19260 0.70 -0.2 453,646 + EX31_RS19260 0.70 +0.2 453,646 + EX31_RS19260 0.70 +1.0 453,646 + EX31_RS19260 0.70 +0.4 453,646 + EX31_RS19260 0.70 -1.5 453,646 + EX31_RS19260 0.70 -1.5 453,647 - EX31_RS19260 0.70 +0.4 453,647 - EX31_RS19260 0.70 +0.1 453,647 - EX31_RS19260 0.70 +0.3 453,647 - EX31_RS19260 0.70 -0.2 453,647 - EX31_RS19260 0.70 +0.8 453,647 - EX31_RS19260 0.70 +0.4 453,647 - EX31_RS19260 0.70 +0.4 453,647 - EX31_RS19260 0.70 +1.1 453,647 - EX31_RS19260 0.70 +0.6 453,647 - EX31_RS19260 0.70 +0.2 453,727 + EX31_RS19260 0.74 +0.5 453,728 - EX31_RS19260 0.74 -0.0 453,728 - EX31_RS19260 0.74 +0.2 453,780 - EX31_RS19260 0.77 -0.1 453,963 + EX31_RS19260 0.85 +0.6 453,963 + EX31_RS19260 0.85 +0.4 453,964 - EX31_RS19260 0.85 +0.1 453,964 - EX31_RS19260 0.85 +1.6 453,988 + EX31_RS19260 0.86 -0.3 453,988 + EX31_RS19260 0.86 +0.2 454,049 + EX31_RS19260 0.89 +0.9 454,050 - EX31_RS19260 0.89 +1.0 454,050 - EX31_RS19260 0.89 +0.5 454,050 - EX31_RS19260 0.89 -0.6 454,062 + EX31_RS19260 0.90 +0.8 454,211 + +0.8 454,283 + -1.3 454,319 + +0.5 454,341 + +0.3 454,341 + -0.9 454,342 - -0.1 454,389 - +1.0 454,389 - -1.0 454,389 - +1.1 454,393 + +2.2 454,393 + +1.5 454,393 + +0.8 454,393 + +1.2 454,394 - +0.5 454,394 - +0.9 454,449 + +0.4 454,449 + +0.9 454,449 + +0.9 454,450 - +0.7 454,472 - +0.0 454,536 + EX31_RS19265 0.14 +1.2 454,536 + EX31_RS19265 0.14 -0.6 454,536 + EX31_RS19265 0.14 +0.4 454,537 - EX31_RS19265 0.14 +0.2 454,537 - EX31_RS19265 0.14 +0.7 454,537 - EX31_RS19265 0.14 +0.2 454,561 + EX31_RS19265 0.16 -0.6 454,629 + EX31_RS19265 0.21 +0.2 454,629 + EX31_RS19265 0.21 -0.7 454,630 - EX31_RS19265 0.21 +0.1 454,630 - EX31_RS19265 0.21 +0.4 454,743 + EX31_RS19265 0.29 -0.5 454,743 + EX31_RS19265 0.29 +0.7 454,770 - EX31_RS19265 0.31 +0.7 454,820 - EX31_RS19265 0.35 +0.5 454,820 - EX31_RS19265 0.35 +0.5 454,820 - EX31_RS19265 0.35 +0.6 454,820 - EX31_RS19265 0.35 -0.5 454,820 - EX31_RS19265 0.35 +0.5 454,820 - EX31_RS19265 0.35 +1.0 454,870 + EX31_RS19265 0.38 +1.0 454,870 + EX31_RS19265 0.38 +1.4 454,871 - EX31_RS19265 0.39 +0.6 454,897 + EX31_RS19265 0.40 +1.2 455,055 + EX31_RS19265 0.52 +0.3 455,055 + EX31_RS19265 0.52 +1.3 455,229 + EX31_RS19265 0.65 +0.7 455,230 - EX31_RS19265 0.65 -1.0 455,230 - EX31_RS19265 0.65 -0.2 455,271 + EX31_RS19265 0.68 +0.8 455,271 + EX31_RS19265 0.68 +1.1 455,271 + EX31_RS19265 0.68 +0.9 455,272 - EX31_RS19265 0.68 +1.8 455,272 - EX31_RS19265 0.68 +1.4 455,280 + EX31_RS19265 0.68 -0.7
Or see this region's nucleotide sequence