Strain Fitness in Rahnella sp. WP5 around EX31_RS13475

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13470 and EX31_RS13475 are separated by 6 nucleotidesEX31_RS13475 and EX31_RS13480 are separated by 25 nucleotides EX31_RS13470: EX31_RS13470 - single-stranded-DNA-specific exonuclease RecJ, at 128,561 to 130,294 _RS13470 EX31_RS13475: EX31_RS13475 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 130,301 to 131,020 _RS13475 EX31_RS13480: EX31_RS13480 - site-specific tyrosine recombinase XerD, at 131,046 to 132,005 _RS13480 Position (kb) 130 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 129.375 kb on - strand, within EX31_RS13470at 129.397 kb on + strand, within EX31_RS13470at 129.397 kb on + strand, within EX31_RS13470at 129.397 kb on + strand, within EX31_RS13470at 129.398 kb on - strand, within EX31_RS13470at 129.398 kb on - strand, within EX31_RS13470at 129.398 kb on - strand, within EX31_RS13470at 129.398 kb on - strand, within EX31_RS13470at 129.398 kb on - strand, within EX31_RS13470at 129.398 kb on - strand, within EX31_RS13470at 129.398 kb on - strand, within EX31_RS13470at 129.398 kb on - strand, within EX31_RS13470at 129.398 kb on - strand, within EX31_RS13470at 129.398 kb on - strand, within EX31_RS13470at 129.549 kb on + strand, within EX31_RS13470at 129.549 kb on + strand, within EX31_RS13470at 129.705 kb on + strand, within EX31_RS13470at 129.706 kb on - strand, within EX31_RS13470at 129.706 kb on - strand, within EX31_RS13470at 129.769 kb on + strand, within EX31_RS13470at 129.794 kb on + strand, within EX31_RS13470at 129.951 kb on + strand, within EX31_RS13470at 129.991 kb on + strand, within EX31_RS13470at 129.992 kb on - strand, within EX31_RS13470at 130.069 kb on + strand, within EX31_RS13470at 130.070 kb on - strand, within EX31_RS13470at 130.070 kb on - strand, within EX31_RS13470at 130.070 kb on - strand, within EX31_RS13470at 130.073 kb on + strand, within EX31_RS13470at 130.074 kb on - strand, within EX31_RS13470at 130.074 kb on - strand, within EX31_RS13470at 130.144 kb on - strandat 130.144 kb on - strandat 130.153 kb on + strandat 130.154 kb on - strandat 130.207 kb on - strandat 130.207 kb on - strandat 130.315 kb on + strandat 130.315 kb on + strandat 130.315 kb on + strandat 130.315 kb on + strandat 130.316 kb on - strandat 130.316 kb on - strandat 130.374 kb on - strand, within EX31_RS13475at 130.374 kb on - strand, within EX31_RS13475at 130.457 kb on - strand, within EX31_RS13475at 130.534 kb on + strand, within EX31_RS13475at 130.534 kb on + strand, within EX31_RS13475at 130.534 kb on + strand, within EX31_RS13475at 130.535 kb on - strand, within EX31_RS13475at 130.535 kb on - strand, within EX31_RS13475at 130.535 kb on - strand, within EX31_RS13475at 130.543 kb on + strand, within EX31_RS13475at 130.543 kb on + strand, within EX31_RS13475at 130.543 kb on + strand, within EX31_RS13475at 130.543 kb on + strand, within EX31_RS13475at 130.543 kb on + strand, within EX31_RS13475at 130.544 kb on - strand, within EX31_RS13475at 130.544 kb on - strand, within EX31_RS13475at 130.544 kb on - strand, within EX31_RS13475at 130.544 kb on - strand, within EX31_RS13475at 130.544 kb on - strand, within EX31_RS13475at 130.544 kb on - strand, within EX31_RS13475at 130.544 kb on - strand, within EX31_RS13475at 130.611 kb on - strand, within EX31_RS13475at 130.624 kb on + strand, within EX31_RS13475at 130.624 kb on + strand, within EX31_RS13475at 130.625 kb on - strand, within EX31_RS13475at 130.625 kb on - strand, within EX31_RS13475at 130.626 kb on + strand, within EX31_RS13475at 130.626 kb on + strand, within EX31_RS13475at 130.626 kb on + strand, within EX31_RS13475at 130.626 kb on + strand, within EX31_RS13475at 130.626 kb on + strand, within EX31_RS13475at 130.626 kb on + strand, within EX31_RS13475at 130.626 kb on + strand, within EX31_RS13475at 130.627 kb on - strand, within EX31_RS13475at 130.627 kb on - strand, within EX31_RS13475at 130.627 kb on - strand, within EX31_RS13475at 130.627 kb on - strand, within EX31_RS13475at 130.627 kb on - strand, within EX31_RS13475at 130.627 kb on - strand, within EX31_RS13475at 130.634 kb on + strand, within EX31_RS13475at 130.634 kb on + strand, within EX31_RS13475at 130.635 kb on - strand, within EX31_RS13475at 130.660 kb on - strand, within EX31_RS13475at 130.714 kb on + strand, within EX31_RS13475at 130.714 kb on + strand, within EX31_RS13475at 130.714 kb on + strand, within EX31_RS13475at 130.716 kb on + strand, within EX31_RS13475at 130.716 kb on + strand, within EX31_RS13475at 130.716 kb on + strand, within EX31_RS13475at 130.717 kb on - strand, within EX31_RS13475at 130.717 kb on - strand, within EX31_RS13475at 130.717 kb on - strand, within EX31_RS13475at 130.737 kb on - strand, within EX31_RS13475at 130.803 kb on + strand, within EX31_RS13475at 130.804 kb on - strand, within EX31_RS13475at 130.804 kb on - strand, within EX31_RS13475at 130.804 kb on - strand, within EX31_RS13475at 130.804 kb on - strand, within EX31_RS13475at 130.804 kb on - strand, within EX31_RS13475at 130.845 kb on + strand, within EX31_RS13475at 130.845 kb on + strand, within EX31_RS13475at 130.845 kb on + strand, within EX31_RS13475at 130.845 kb on + strand, within EX31_RS13475at 130.845 kb on + strand, within EX31_RS13475at 130.845 kb on + strand, within EX31_RS13475at 130.845 kb on + strand, within EX31_RS13475at 130.845 kb on + strand, within EX31_RS13475at 130.845 kb on + strand, within EX31_RS13475at 130.845 kb on + strand, within EX31_RS13475at 130.846 kb on - strand, within EX31_RS13475at 130.846 kb on - strand, within EX31_RS13475at 130.846 kb on - strand, within EX31_RS13475at 130.846 kb on - strand, within EX31_RS13475at 130.846 kb on - strand, within EX31_RS13475at 130.846 kb on - strand, within EX31_RS13475at 130.846 kb on - strand, within EX31_RS13475at 130.864 kb on + strand, within EX31_RS13475at 130.864 kb on + strand, within EX31_RS13475at 130.978 kb on + strandat 130.978 kb on + strandat 130.978 kb on + strandat 130.979 kb on - strandat 130.979 kb on - strandat 130.979 kb on - strandat 130.979 kb on - strandat 131.006 kb on + strandat 131.007 kb on - strandat 131.047 kb on + strandat 131.048 kb on - strandat 131.048 kb on - strandat 131.073 kb on + strandat 131.074 kb on - strandat 131.097 kb on + strandat 131.098 kb on - strandat 131.106 kb on - strandat 131.107 kb on + strandat 131.108 kb on - strandat 131.124 kb on + strandat 131.182 kb on - strand, within EX31_RS13480at 131.254 kb on + strand, within EX31_RS13480at 131.383 kb on + strand, within EX31_RS13480at 131.430 kb on - strand, within EX31_RS13480at 131.538 kb on - strand, within EX31_RS13480at 131.590 kb on - strand, within EX31_RS13480at 131.590 kb on - strand, within EX31_RS13480at 131.718 kb on + strand, within EX31_RS13480at 131.718 kb on + strand, within EX31_RS13480at 131.719 kb on - strand, within EX31_RS13480at 131.719 kb on - strand, within EX31_RS13480at 131.719 kb on - strand, within EX31_RS13480at 131.719 kb on - strand, within EX31_RS13480at 131.719 kb on - strand, within EX31_RS13480at 131.757 kb on - strand, within EX31_RS13480at 131.778 kb on + strand, within EX31_RS13480at 131.816 kb on + strand, within EX31_RS13480at 131.817 kb on - strand, within EX31_RS13480at 131.817 kb on - strand, within EX31_RS13480at 131.904 kb on - strand, within EX31_RS13480at 132.018 kb on + strandat 132.019 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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129,375 - EX31_RS13470 0.47 -0.1
129,397 + EX31_RS13470 0.48 -0.1
129,397 + EX31_RS13470 0.48 +0.7
129,397 + EX31_RS13470 0.48 -0.1
129,398 - EX31_RS13470 0.48 -0.2
129,398 - EX31_RS13470 0.48 +0.0
129,398 - EX31_RS13470 0.48 +0.7
129,398 - EX31_RS13470 0.48 +0.6
129,398 - EX31_RS13470 0.48 +0.7
129,398 - EX31_RS13470 0.48 +0.4
129,398 - EX31_RS13470 0.48 -0.2
129,398 - EX31_RS13470 0.48 +0.7
129,398 - EX31_RS13470 0.48 -0.7
129,398 - EX31_RS13470 0.48 -0.7
129,549 + EX31_RS13470 0.57 +1.0
129,549 + EX31_RS13470 0.57 -1.0
129,705 + EX31_RS13470 0.66 +0.7
129,706 - EX31_RS13470 0.66 +0.1
129,706 - EX31_RS13470 0.66 +0.4
129,769 + EX31_RS13470 0.70 -0.2
129,794 + EX31_RS13470 0.71 -0.2
129,951 + EX31_RS13470 0.80 +0.1
129,991 + EX31_RS13470 0.82 +0.5
129,992 - EX31_RS13470 0.83 -1.3
130,069 + EX31_RS13470 0.87 -0.6
130,070 - EX31_RS13470 0.87 +0.2
130,070 - EX31_RS13470 0.87 -1.0
130,070 - EX31_RS13470 0.87 -1.4
130,073 + EX31_RS13470 0.87 -1.2
130,074 - EX31_RS13470 0.87 +1.0
130,074 - EX31_RS13470 0.87 -0.1
130,144 - -0.2
130,144 - -1.1
130,153 + +0.8
130,154 - +1.0
130,207 - +0.5
130,207 - -0.3
130,315 + +0.6
130,315 + +0.2
130,315 + -0.2
130,315 + -0.2
130,316 - -0.5
130,316 - +0.1
130,374 - EX31_RS13475 0.10 -0.8
130,374 - EX31_RS13475 0.10 +0.5
130,457 - EX31_RS13475 0.22 +0.2
130,534 + EX31_RS13475 0.32 +0.1
130,534 + EX31_RS13475 0.32 -1.2
130,534 + EX31_RS13475 0.32 +0.9
130,535 - EX31_RS13475 0.33 +0.4
130,535 - EX31_RS13475 0.33 -0.2
130,535 - EX31_RS13475 0.33 -0.4
130,543 + EX31_RS13475 0.34 +0.1
130,543 + EX31_RS13475 0.34 +0.1
130,543 + EX31_RS13475 0.34 -0.8
130,543 + EX31_RS13475 0.34 -0.6
130,543 + EX31_RS13475 0.34 -0.0
130,544 - EX31_RS13475 0.34 -0.4
130,544 - EX31_RS13475 0.34 -0.5
130,544 - EX31_RS13475 0.34 -0.5
130,544 - EX31_RS13475 0.34 -0.0
130,544 - EX31_RS13475 0.34 +0.2
130,544 - EX31_RS13475 0.34 -0.2
130,544 - EX31_RS13475 0.34 -0.2
130,611 - EX31_RS13475 0.43 -0.7
130,624 + EX31_RS13475 0.45 -0.6
130,624 + EX31_RS13475 0.45 +0.1
130,625 - EX31_RS13475 0.45 +0.4
130,625 - EX31_RS13475 0.45 +0.0
130,626 + EX31_RS13475 0.45 -1.0
130,626 + EX31_RS13475 0.45 -1.0
130,626 + EX31_RS13475 0.45 -1.1
130,626 + EX31_RS13475 0.45 -0.6
130,626 + EX31_RS13475 0.45 -0.7
130,626 + EX31_RS13475 0.45 +0.9
130,626 + EX31_RS13475 0.45 +0.5
130,627 - EX31_RS13475 0.45 -0.2
130,627 - EX31_RS13475 0.45 +0.3
130,627 - EX31_RS13475 0.45 -0.3
130,627 - EX31_RS13475 0.45 +0.1
130,627 - EX31_RS13475 0.45 -0.9
130,627 - EX31_RS13475 0.45 +0.1
130,634 + EX31_RS13475 0.46 -1.0
130,634 + EX31_RS13475 0.46 +0.1
130,635 - EX31_RS13475 0.46 -0.4
130,660 - EX31_RS13475 0.50 -0.1
130,714 + EX31_RS13475 0.57 +0.3
130,714 + EX31_RS13475 0.57 +0.4
130,714 + EX31_RS13475 0.57 -0.3
130,716 + EX31_RS13475 0.58 +0.4
130,716 + EX31_RS13475 0.58 -0.5
130,716 + EX31_RS13475 0.58 +0.2
130,717 - EX31_RS13475 0.58 -0.4
130,717 - EX31_RS13475 0.58 -1.7
130,717 - EX31_RS13475 0.58 -0.5
130,737 - EX31_RS13475 0.61 -0.8
130,803 + EX31_RS13475 0.70 +0.3
130,804 - EX31_RS13475 0.70 -0.0
130,804 - EX31_RS13475 0.70 +0.9
130,804 - EX31_RS13475 0.70 -0.8
130,804 - EX31_RS13475 0.70 -0.2
130,804 - EX31_RS13475 0.70 +0.8
130,845 + EX31_RS13475 0.76 +0.2
130,845 + EX31_RS13475 0.76 -0.1
130,845 + EX31_RS13475 0.76 -1.2
130,845 + EX31_RS13475 0.76 +0.6
130,845 + EX31_RS13475 0.76 -0.1
130,845 + EX31_RS13475 0.76 -0.6
130,845 + EX31_RS13475 0.76 +1.5
130,845 + EX31_RS13475 0.76 -0.4
130,845 + EX31_RS13475 0.76 -0.4
130,845 + EX31_RS13475 0.76 -0.4
130,846 - EX31_RS13475 0.76 -0.5
130,846 - EX31_RS13475 0.76 -0.4
130,846 - EX31_RS13475 0.76 +0.3
130,846 - EX31_RS13475 0.76 +0.3
130,846 - EX31_RS13475 0.76 -1.8
130,846 - EX31_RS13475 0.76 +0.1
130,846 - EX31_RS13475 0.76 -0.4
130,864 + EX31_RS13475 0.78 +0.3
130,864 + EX31_RS13475 0.78 +0.0
130,978 + -0.0
130,978 + -0.5
130,978 + -0.3
130,979 - -0.2
130,979 - -2.8
130,979 - -0.3
130,979 - -2.8
131,006 + -0.6
131,007 - -0.3
131,047 + -0.7
131,048 - +0.5
131,048 - +0.7
131,073 + +0.2
131,074 - -2.0
131,097 + +0.6
131,098 - +1.3
131,106 - -0.0
131,107 + -0.1
131,108 - -2.1
131,124 + +1.6
131,182 - EX31_RS13480 0.14 -0.9
131,254 + EX31_RS13480 0.22 +0.0
131,383 + EX31_RS13480 0.35 +0.6
131,430 - EX31_RS13480 0.40 -0.2
131,538 - EX31_RS13480 0.51 -0.4
131,590 - EX31_RS13480 0.57 -0.9
131,590 - EX31_RS13480 0.57 -0.5
131,718 + EX31_RS13480 0.70 +0.0
131,718 + EX31_RS13480 0.70 -1.3
131,719 - EX31_RS13480 0.70 +1.9
131,719 - EX31_RS13480 0.70 +0.0
131,719 - EX31_RS13480 0.70 +0.4
131,719 - EX31_RS13480 0.70 -1.1
131,719 - EX31_RS13480 0.70 +0.0
131,757 - EX31_RS13480 0.74 -1.0
131,778 + EX31_RS13480 0.76 +0.1
131,816 + EX31_RS13480 0.80 +0.4
131,817 - EX31_RS13480 0.80 +0.2
131,817 - EX31_RS13480 0.80 -1.0
131,904 - EX31_RS13480 0.89 +0.5
132,018 + -0.3
132,019 - +0.0

Or see this region's nucleotide sequence