Strain Fitness in Rahnella sp. WP5 around EX31_RS02265

Experiment: NL-CCM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02255 and EX31_RS02260 are separated by 58 nucleotidesEX31_RS02260 and EX31_RS02265 are separated by 46 nucleotidesEX31_RS02265 and EX31_RS02270 are separated by 60 nucleotidesEX31_RS02270 and EX31_RS02275 are separated by 14 nucleotides EX31_RS02255: EX31_RS02255 - oxidoreductase, at 487,802 to 488,692 _RS02255 EX31_RS02260: EX31_RS02260 - chitin disaccharide deacetylase, at 488,751 to 489,509 _RS02260 EX31_RS02265: EX31_RS02265 - 6-phospho-beta-glucosidase, at 489,556 to 490,899 _RS02265 EX31_RS02270: EX31_RS02270 - transcriptional regulator ChbR, at 490,960 to 491,796 _RS02270 EX31_RS02275: EX31_RS02275 - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 491,811 to 492,158 _RS02275 Position (kb) 489 490 491Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.586 kb on + strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.587 kb on - strand, within EX31_RS02255at 488.601 kb on + strand, within EX31_RS02255at 488.633 kb on - strandat 488.633 kb on - strandat 488.739 kb on - strandat 488.742 kb on + strandat 488.742 kb on + strandat 488.743 kb on - strandat 488.743 kb on - strandat 488.743 kb on - strandat 488.745 kb on + strandat 488.753 kb on - strandat 488.754 kb on + strandat 488.754 kb on + strandat 488.755 kb on - strandat 488.823 kb on + strandat 488.823 kb on + strandat 488.824 kb on - strandat 488.824 kb on - strandat 488.824 kb on - strandat 488.854 kb on + strand, within EX31_RS02260at 488.854 kb on + strand, within EX31_RS02260at 488.855 kb on - strand, within EX31_RS02260at 488.876 kb on + strand, within EX31_RS02260at 489.064 kb on - strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.122 kb on + strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.123 kb on - strand, within EX31_RS02260at 489.493 kb on - strandat 489.498 kb on + strandat 489.499 kb on - strandat 489.503 kb on + strandat 489.504 kb on - strandat 489.509 kb on + strandat 489.510 kb on - strandat 489.631 kb on + strandat 489.749 kb on + strand, within EX31_RS02265at 489.749 kb on + strand, within EX31_RS02265at 489.749 kb on + strand, within EX31_RS02265at 489.749 kb on + strand, within EX31_RS02265at 489.749 kb on + strand, within EX31_RS02265at 489.749 kb on + strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.750 kb on - strand, within EX31_RS02265at 489.752 kb on - strand, within EX31_RS02265at 489.859 kb on - strand, within EX31_RS02265at 489.859 kb on - strand, within EX31_RS02265at 489.865 kb on - strand, within EX31_RS02265at 489.874 kb on - strand, within EX31_RS02265at 489.915 kb on - strand, within EX31_RS02265at 489.915 kb on - strand, within EX31_RS02265at 489.950 kb on + strand, within EX31_RS02265at 489.954 kb on - strand, within EX31_RS02265at 489.954 kb on - strand, within EX31_RS02265at 490.043 kb on - strand, within EX31_RS02265at 490.071 kb on - strand, within EX31_RS02265at 490.110 kb on + strand, within EX31_RS02265at 490.115 kb on + strand, within EX31_RS02265at 490.115 kb on + strand, within EX31_RS02265at 490.118 kb on + strand, within EX31_RS02265at 490.127 kb on + strand, within EX31_RS02265at 490.178 kb on - strand, within EX31_RS02265at 490.178 kb on - strand, within EX31_RS02265at 490.278 kb on + strand, within EX31_RS02265at 490.279 kb on - strand, within EX31_RS02265at 490.461 kb on + strand, within EX31_RS02265at 490.462 kb on - strand, within EX31_RS02265at 490.527 kb on + strand, within EX31_RS02265at 490.596 kb on + strand, within EX31_RS02265at 490.700 kb on - strand, within EX31_RS02265at 490.728 kb on + strand, within EX31_RS02265at 490.750 kb on - strand, within EX31_RS02265at 490.793 kb on - strandat 490.804 kb on - strandat 490.804 kb on - strandat 490.852 kb on - strandat 490.858 kb on - strandat 490.900 kb on - strandat 490.917 kb on - strandat 491.218 kb on - strand, within EX31_RS02270at 491.413 kb on + strand, within EX31_RS02270at 491.486 kb on + strand, within EX31_RS02270at 491.486 kb on + strand, within EX31_RS02270at 491.486 kb on + strand, within EX31_RS02270at 491.487 kb on - strand, within EX31_RS02270at 491.487 kb on - strand, within EX31_RS02270at 491.524 kb on + strand, within EX31_RS02270at 491.524 kb on + strand, within EX31_RS02270at 491.670 kb on - strand, within EX31_RS02270at 491.701 kb on + strand, within EX31_RS02270

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM
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488,586 + EX31_RS02255 0.88 -0.6
488,586 + EX31_RS02255 0.88 -1.1
488,586 + EX31_RS02255 0.88 -0.0
488,586 + EX31_RS02255 0.88 +0.1
488,586 + EX31_RS02255 0.88 -0.5
488,586 + EX31_RS02255 0.88 -0.6
488,586 + EX31_RS02255 0.88 +0.2
488,586 + EX31_RS02255 0.88 +0.0
488,586 + EX31_RS02255 0.88 +0.8
488,586 + EX31_RS02255 0.88 -0.7
488,586 + EX31_RS02255 0.88 +0.7
488,587 - EX31_RS02255 0.88 -1.6
488,587 - EX31_RS02255 0.88 -1.1
488,587 - EX31_RS02255 0.88 -1.6
488,587 - EX31_RS02255 0.88 +0.2
488,587 - EX31_RS02255 0.88 -0.8
488,587 - EX31_RS02255 0.88 +0.3
488,587 - EX31_RS02255 0.88 +0.4
488,601 + EX31_RS02255 0.90 -0.4
488,633 - -0.3
488,633 - -1.9
488,739 - +0.0
488,742 + +0.3
488,742 + +0.3
488,743 - +0.4
488,743 - +0.2
488,743 - +1.1
488,745 + +0.1
488,753 - +0.5
488,754 + -0.6
488,754 + -0.6
488,755 - +1.8
488,823 + +0.1
488,823 + -1.2
488,824 - -1.3
488,824 - -2.5
488,824 - +0.5
488,854 + EX31_RS02260 0.14 +0.2
488,854 + EX31_RS02260 0.14 -1.3
488,855 - EX31_RS02260 0.14 -0.4
488,876 + EX31_RS02260 0.16 -1.5
489,064 - EX31_RS02260 0.41 -1.7
489,122 + EX31_RS02260 0.49 +1.1
489,122 + EX31_RS02260 0.49 +0.3
489,122 + EX31_RS02260 0.49 +0.0
489,122 + EX31_RS02260 0.49 +0.9
489,122 + EX31_RS02260 0.49 -0.4
489,122 + EX31_RS02260 0.49 -0.1
489,122 + EX31_RS02260 0.49 -1.2
489,122 + EX31_RS02260 0.49 -2.6
489,123 - EX31_RS02260 0.49 -0.0
489,123 - EX31_RS02260 0.49 +1.1
489,123 - EX31_RS02260 0.49 +0.2
489,123 - EX31_RS02260 0.49 -0.4
489,123 - EX31_RS02260 0.49 -0.1
489,123 - EX31_RS02260 0.49 +1.0
489,123 - EX31_RS02260 0.49 +0.0
489,123 - EX31_RS02260 0.49 +0.1
489,123 - EX31_RS02260 0.49 +0.3
489,123 - EX31_RS02260 0.49 +0.5
489,123 - EX31_RS02260 0.49 +0.2
489,123 - EX31_RS02260 0.49 -2.0
489,493 - +0.5
489,498 + +0.0
489,499 - -0.1
489,503 + +0.5
489,504 - +0.1
489,509 + -0.1
489,510 - -0.9
489,631 + -0.9
489,749 + EX31_RS02265 0.14 +0.4
489,749 + EX31_RS02265 0.14 -0.6
489,749 + EX31_RS02265 0.14 -0.2
489,749 + EX31_RS02265 0.14 -0.4
489,749 + EX31_RS02265 0.14 -0.0
489,749 + EX31_RS02265 0.14 -0.7
489,750 - EX31_RS02265 0.14 +0.7
489,750 - EX31_RS02265 0.14 -0.4
489,750 - EX31_RS02265 0.14 +0.9
489,750 - EX31_RS02265 0.14 +0.9
489,750 - EX31_RS02265 0.14 +0.3
489,750 - EX31_RS02265 0.14 -0.4
489,750 - EX31_RS02265 0.14 +0.2
489,750 - EX31_RS02265 0.14 +1.0
489,750 - EX31_RS02265 0.14 -1.7
489,752 - EX31_RS02265 0.15 -0.2
489,859 - EX31_RS02265 0.23 +0.1
489,859 - EX31_RS02265 0.23 +2.8
489,865 - EX31_RS02265 0.23 -0.7
489,874 - EX31_RS02265 0.24 -0.2
489,915 - EX31_RS02265 0.27 +0.4
489,915 - EX31_RS02265 0.27 +0.1
489,950 + EX31_RS02265 0.29 -0.5
489,954 - EX31_RS02265 0.30 +1.5
489,954 - EX31_RS02265 0.30 -1.0
490,043 - EX31_RS02265 0.36 -0.2
490,071 - EX31_RS02265 0.38 +0.8
490,110 + EX31_RS02265 0.41 -0.2
490,115 + EX31_RS02265 0.42 -1.2
490,115 + EX31_RS02265 0.42 -0.5
490,118 + EX31_RS02265 0.42 -1.0
490,127 + EX31_RS02265 0.42 +0.2
490,178 - EX31_RS02265 0.46 +0.1
490,178 - EX31_RS02265 0.46 +2.0
490,278 + EX31_RS02265 0.54 -0.5
490,279 - EX31_RS02265 0.54 +0.1
490,461 + EX31_RS02265 0.67 -1.3
490,462 - EX31_RS02265 0.67 -0.2
490,527 + EX31_RS02265 0.72 +1.0
490,596 + EX31_RS02265 0.77 +0.2
490,700 - EX31_RS02265 0.85 +0.8
490,728 + EX31_RS02265 0.87 +0.2
490,750 - EX31_RS02265 0.89 -1.3
490,793 - +0.0
490,804 - -2.8
490,804 - +0.9
490,852 - +0.1
490,858 - -1.7
490,900 - +0.9
490,917 - -1.7
491,218 - EX31_RS02270 0.31 -0.2
491,413 + EX31_RS02270 0.54 +0.5
491,486 + EX31_RS02270 0.63 +0.0
491,486 + EX31_RS02270 0.63 -1.6
491,486 + EX31_RS02270 0.63 -0.1
491,487 - EX31_RS02270 0.63 +0.3
491,487 - EX31_RS02270 0.63 +0.2
491,524 + EX31_RS02270 0.67 -0.6
491,524 + EX31_RS02270 0.67 -1.5
491,670 - EX31_RS02270 0.85 -0.6
491,701 + EX31_RS02270 0.89 -2.0

Or see this region's nucleotide sequence