Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16510 and EX31_RS16515 are separated by 71 nucleotides EX31_RS16515 and EX31_RS26040 are separated by 583 nucleotides EX31_RS26040 and EX31_RS26045 are separated by 11 nucleotides
EX31_RS16510: EX31_RS16510 - EAL domain-containing protein, at 14,557 to 15,315
_RS16510
EX31_RS16515: EX31_RS16515 - GGDEF domain-containing protein, at 15,387 to 16,445
_RS16515
EX31_RS26040: EX31_RS26040 - hypothetical protein, at 17,029 to 17,205
_RS26040
EX31_RS26045: EX31_RS26045 - hypothetical protein, at 17,217 to 17,462
_RS26045
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.441 kb on - strand at 14.441 kb on - strand at 14.441 kb on - strand at 14.441 kb on - strand at 14.442 kb on + strand at 14.443 kb on - strand at 14.482 kb on + strand at 14.484 kb on + strand at 14.484 kb on + strand at 14.484 kb on + strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.488 kb on + strand at 14.489 kb on - strand at 14.489 kb on - strand at 14.538 kb on + strand at 14.646 kb on + strand, within EX31_RS16510 at 14.646 kb on + strand, within EX31_RS16510 at 14.646 kb on + strand, within EX31_RS16510 at 14.647 kb on - strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.651 kb on - strand, within EX31_RS16510 at 14.651 kb on - strand, within EX31_RS16510 at 14.651 kb on - strand, within EX31_RS16510 at 14.651 kb on - strand, within EX31_RS16510 at 14.651 kb on - strand, within EX31_RS16510 at 14.669 kb on + strand, within EX31_RS16510 at 14.669 kb on + strand, within EX31_RS16510 at 14.973 kb on + strand, within EX31_RS16510 at 14.973 kb on + strand, within EX31_RS16510 at 14.976 kb on + strand, within EX31_RS16510 at 14.978 kb on + strand, within EX31_RS16510 at 14.984 kb on + strand, within EX31_RS16510 at 15.163 kb on - strand, within EX31_RS16510 at 15.219 kb on + strand, within EX31_RS16510 at 15.220 kb on - strand, within EX31_RS16510 at 15.226 kb on - strand, within EX31_RS16510 at 15.266 kb on + strand at 15.314 kb on - strand at 15.443 kb on + strand at 15.456 kb on - strand at 15.558 kb on - strand, within EX31_RS16515 at 15.560 kb on + strand, within EX31_RS16515 at 15.561 kb on - strand, within EX31_RS16515 at 15.622 kb on - strand, within EX31_RS16515 at 15.623 kb on + strand, within EX31_RS16515 at 15.628 kb on - strand, within EX31_RS16515 at 15.628 kb on - strand, within EX31_RS16515 at 15.649 kb on + strand, within EX31_RS16515 at 15.650 kb on - strand, within EX31_RS16515 at 15.707 kb on + strand, within EX31_RS16515 at 15.822 kb on - strand, within EX31_RS16515 at 15.823 kb on + strand, within EX31_RS16515 at 15.858 kb on - strand, within EX31_RS16515 at 15.948 kb on - strand, within EX31_RS16515 at 16.062 kb on + strand, within EX31_RS16515 at 16.062 kb on + strand, within EX31_RS16515 at 16.239 kb on - strand, within EX31_RS16515 at 16.239 kb on - strand, within EX31_RS16515 at 16.262 kb on + strand, within EX31_RS16515 at 16.335 kb on + strand, within EX31_RS16515 at 16.358 kb on + strand at 16.359 kb on - strand at 16.361 kb on - strand at 16.361 kb on - strand at 16.389 kb on - strand at 16.390 kb on + strand at 16.401 kb on + strand at 16.401 kb on + strand at 16.401 kb on + strand at 16.402 kb on - strand at 16.421 kb on + strand at 16.463 kb on - strand at 16.485 kb on + strand at 16.486 kb on - strand at 16.603 kb on + strand at 16.615 kb on + strand at 16.615 kb on + strand at 16.616 kb on - strand at 16.625 kb on - strand at 16.739 kb on + strand at 16.749 kb on + strand at 16.754 kb on + strand at 16.754 kb on + strand at 16.755 kb on - strand at 16.756 kb on + strand at 16.777 kb on - strand at 16.777 kb on - strand at 16.851 kb on + strand at 16.888 kb on - strand at 16.888 kb on - strand at 16.924 kb on + strand at 16.924 kb on + strand at 16.925 kb on - strand at 17.039 kb on + strand at 17.040 kb on - strand at 17.041 kb on + strand at 17.041 kb on + strand at 17.041 kb on + strand at 17.041 kb on + strand at 17.041 kb on + strand at 17.042 kb on - strand at 17.083 kb on - strand, within EX31_RS26040 at 17.105 kb on + strand, within EX31_RS26040 at 17.105 kb on + strand, within EX31_RS26040 at 17.111 kb on + strand, within EX31_RS26040 at 17.215 kb on + strand at 17.276 kb on - strand, within EX31_RS26045 at 17.343 kb on + strand, within EX31_RS26045 at 17.343 kb on + strand, within EX31_RS26045 at 17.343 kb on + strand, within EX31_RS26045 at 17.344 kb on - strand, within EX31_RS26045 at 17.344 kb on - strand, within EX31_RS26045 at 17.344 kb on - strand, within EX31_RS26045 at 17.345 kb on + strand, within EX31_RS26045 at 17.345 kb on + strand, within EX31_RS26045 at 17.345 kb on + strand, within EX31_RS26045 at 17.345 kb on + strand, within EX31_RS26045 at 17.346 kb on - strand, within EX31_RS26045 at 17.346 kb on - strand, within EX31_RS26045 at 17.346 kb on - strand, within EX31_RS26045 at 17.346 kb on - strand, within EX31_RS26045 at 17.346 kb on - strand, within EX31_RS26045 at 17.361 kb on - strand, within EX31_RS26045 at 17.364 kb on + strand, within EX31_RS26045 at 17.364 kb on + strand, within EX31_RS26045 at 17.364 kb on + strand, within EX31_RS26045 at 17.364 kb on + strand, within EX31_RS26045 at 17.364 kb on + strand, within EX31_RS26045 at 17.364 kb on + strand, within EX31_RS26045 at 17.365 kb on - strand, within EX31_RS26045 at 17.426 kb on + strand, within EX31_RS26045 at 17.427 kb on - strand, within EX31_RS26045 at 17.427 kb on - strand, within EX31_RS26045
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 14,441 - +0.6 14,441 - -0.5 14,441 - +0.8 14,441 - +0.6 14,442 + +1.9 14,443 - +1.0 14,482 + -0.0 14,484 + +1.2 14,484 + +1.3 14,484 + +1.1 14,485 - -0.1 14,485 - +0.2 14,485 - +0.1 14,485 - +0.5 14,485 - -0.2 14,485 - -0.5 14,485 - -0.5 14,485 - -0.4 14,488 + +0.1 14,489 - -0.2 14,489 - +0.6 14,538 + +0.5 14,646 + EX31_RS16510 0.12 -0.9 14,646 + EX31_RS16510 0.12 -0.8 14,646 + EX31_RS16510 0.12 -1.7 14,647 - EX31_RS16510 0.12 -2.4 14,650 + EX31_RS16510 0.12 -0.7 14,650 + EX31_RS16510 0.12 -0.4 14,650 + EX31_RS16510 0.12 -1.2 14,650 + EX31_RS16510 0.12 +0.3 14,650 + EX31_RS16510 0.12 -2.3 14,650 + EX31_RS16510 0.12 -1.7 14,650 + EX31_RS16510 0.12 -1.3 14,651 - EX31_RS16510 0.12 -1.1 14,651 - EX31_RS16510 0.12 -0.4 14,651 - EX31_RS16510 0.12 +0.7 14,651 - EX31_RS16510 0.12 -0.3 14,651 - EX31_RS16510 0.12 -1.2 14,669 + EX31_RS16510 0.15 -0.5 14,669 + EX31_RS16510 0.15 -1.1 14,973 + EX31_RS16510 0.55 -1.0 14,973 + EX31_RS16510 0.55 -2.2 14,976 + EX31_RS16510 0.55 -1.2 14,978 + EX31_RS16510 0.55 -0.1 14,984 + EX31_RS16510 0.56 -0.9 15,163 - EX31_RS16510 0.80 -1.2 15,219 + EX31_RS16510 0.87 -1.5 15,220 - EX31_RS16510 0.87 -0.4 15,226 - EX31_RS16510 0.88 -0.6 15,266 + -2.7 15,314 - -0.1 15,443 + -0.3 15,456 - -0.8 15,558 - EX31_RS16515 0.16 +0.6 15,560 + EX31_RS16515 0.16 +0.8 15,561 - EX31_RS16515 0.16 +1.2 15,622 - EX31_RS16515 0.22 +0.4 15,623 + EX31_RS16515 0.22 -1.0 15,628 - EX31_RS16515 0.23 +0.1 15,628 - EX31_RS16515 0.23 +0.8 15,649 + EX31_RS16515 0.25 +0.6 15,650 - EX31_RS16515 0.25 +1.0 15,707 + EX31_RS16515 0.30 +0.6 15,822 - EX31_RS16515 0.41 +0.9 15,823 + EX31_RS16515 0.41 +0.9 15,858 - EX31_RS16515 0.44 -1.1 15,948 - EX31_RS16515 0.53 +1.4 16,062 + EX31_RS16515 0.64 +0.4 16,062 + EX31_RS16515 0.64 -0.6 16,239 - EX31_RS16515 0.80 -0.9 16,239 - EX31_RS16515 0.80 +0.9 16,262 + EX31_RS16515 0.83 +0.8 16,335 + EX31_RS16515 0.90 -1.2 16,358 + +0.2 16,359 - +1.9 16,361 - -0.1 16,361 - -0.3 16,389 - +0.1 16,390 + +1.1 16,401 + +0.8 16,401 + +0.6 16,401 + -0.2 16,402 - +0.1 16,421 + +0.6 16,463 - -0.1 16,485 + +0.2 16,486 - -0.4 16,603 + -1.3 16,615 + -2.7 16,615 + -0.9 16,616 - -3.0 16,625 - -0.2 16,739 + -3.2 16,749 + -2.4 16,754 + -0.3 16,754 + +0.4 16,755 - -0.4 16,756 + +0.6 16,777 - +0.2 16,777 - -0.4 16,851 + +0.6 16,888 - -0.2 16,888 - -1.5 16,924 + -0.2 16,924 + -0.9 16,925 - -2.1 17,039 + -0.2 17,040 - -0.4 17,041 + -0.0 17,041 + -1.8 17,041 + -0.5 17,041 + -1.0 17,041 + -1.2 17,042 - -1.1 17,083 - EX31_RS26040 0.31 -1.2 17,105 + EX31_RS26040 0.43 +0.5 17,105 + EX31_RS26040 0.43 +1.0 17,111 + EX31_RS26040 0.46 +0.1 17,215 + +1.2 17,276 - EX31_RS26045 0.24 -1.5 17,343 + EX31_RS26045 0.51 +0.5 17,343 + EX31_RS26045 0.51 -0.4 17,343 + EX31_RS26045 0.51 -0.3 17,344 - EX31_RS26045 0.52 -1.8 17,344 - EX31_RS26045 0.52 -0.4 17,344 - EX31_RS26045 0.52 -0.7 17,345 + EX31_RS26045 0.52 -1.9 17,345 + EX31_RS26045 0.52 -0.4 17,345 + EX31_RS26045 0.52 +0.2 17,345 + EX31_RS26045 0.52 -0.4 17,346 - EX31_RS26045 0.52 -0.4 17,346 - EX31_RS26045 0.52 +0.3 17,346 - EX31_RS26045 0.52 -0.2 17,346 - EX31_RS26045 0.52 +0.1 17,346 - EX31_RS26045 0.52 +0.4 17,361 - EX31_RS26045 0.59 -0.5 17,364 + EX31_RS26045 0.60 +1.8 17,364 + EX31_RS26045 0.60 -0.9 17,364 + EX31_RS26045 0.60 -0.7 17,364 + EX31_RS26045 0.60 +0.1 17,364 + EX31_RS26045 0.60 -0.1 17,364 + EX31_RS26045 0.60 -0.2 17,365 - EX31_RS26045 0.60 -0.2 17,426 + EX31_RS26045 0.85 -0.3 17,427 - EX31_RS26045 0.85 +0.2 17,427 - EX31_RS26045 0.85 -1.3
Or see this region's nucleotide sequence