Strain Fitness in Rahnella sp. WP5 around EX31_RS08800

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS08795 and EX31_RS08800 are separated by 144 nucleotidesEX31_RS08800 and EX31_RS08805 are separated by 98 nucleotides EX31_RS08795: EX31_RS08795 - adenylosuccinate synthase, at 269,673 to 270,971 _RS08795 EX31_RS08800: EX31_RS08800 - DUF2065 domain-containing protein, at 271,116 to 271,316 _RS08800 EX31_RS08805: EX31_RS08805 - protease modulator HflC, at 271,415 to 272,413 _RS08805 Position (kb) 271 272Strain fitness (log2 ratio) -2 -1 0 1 2at 271.038 kb on - strandat 271.063 kb on - strandat 271.144 kb on + strand, within EX31_RS08800at 271.144 kb on + strand, within EX31_RS08800at 271.144 kb on + strand, within EX31_RS08800at 271.145 kb on - strand, within EX31_RS08800at 271.145 kb on - strand, within EX31_RS08800at 271.145 kb on - strand, within EX31_RS08800at 271.147 kb on + strand, within EX31_RS08800at 271.152 kb on + strand, within EX31_RS08800at 271.152 kb on + strand, within EX31_RS08800at 271.153 kb on - strand, within EX31_RS08800at 271.153 kb on - strand, within EX31_RS08800at 271.249 kb on + strand, within EX31_RS08800at 271.284 kb on + strand, within EX31_RS08800at 271.285 kb on - strand, within EX31_RS08800at 271.333 kb on + strandat 271.333 kb on + strandat 271.333 kb on + strandat 271.334 kb on - strandat 271.334 kb on - strandat 271.334 kb on - strandat 271.334 kb on - strandat 271.417 kb on - strandat 271.441 kb on + strandat 271.441 kb on + strandat 271.469 kb on + strandat 271.496 kb on - strandat 271.496 kb on - strandat 271.536 kb on + strand, within EX31_RS08805at 271.536 kb on + strand, within EX31_RS08805at 271.537 kb on - strand, within EX31_RS08805at 271.537 kb on - strand, within EX31_RS08805at 271.618 kb on + strand, within EX31_RS08805at 271.618 kb on + strand, within EX31_RS08805at 271.619 kb on - strand, within EX31_RS08805at 271.619 kb on - strand, within EX31_RS08805at 271.691 kb on - strand, within EX31_RS08805at 271.739 kb on - strand, within EX31_RS08805at 271.739 kb on - strand, within EX31_RS08805at 271.739 kb on - strand, within EX31_RS08805at 271.739 kb on - strand, within EX31_RS08805at 271.746 kb on + strand, within EX31_RS08805at 271.793 kb on + strand, within EX31_RS08805at 271.793 kb on + strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 271.794 kb on - strand, within EX31_RS08805at 272.078 kb on + strand, within EX31_RS08805at 272.078 kb on + strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.079 kb on - strand, within EX31_RS08805at 272.104 kb on - strand, within EX31_RS08805at 272.104 kb on - strand, within EX31_RS08805at 272.104 kb on - strand, within EX31_RS08805at 272.104 kb on - strand, within EX31_RS08805at 272.106 kb on + strand, within EX31_RS08805at 272.107 kb on - strand, within EX31_RS08805at 272.126 kb on - strand, within EX31_RS08805at 272.154 kb on - strand, within EX31_RS08805at 272.154 kb on - strand, within EX31_RS08805at 272.154 kb on - strand, within EX31_RS08805at 272.154 kb on - strand, within EX31_RS08805at 272.154 kb on - strand, within EX31_RS08805at 272.154 kb on - strand, within EX31_RS08805at 272.251 kb on + strand, within EX31_RS08805at 272.271 kb on + strand, within EX31_RS08805at 272.272 kb on - strand, within EX31_RS08805at 272.285 kb on - strand, within EX31_RS08805at 272.288 kb on - strand, within EX31_RS08805at 272.288 kb on - strand, within EX31_RS08805at 272.288 kb on - strand, within EX31_RS08805at 272.309 kb on - strand, within EX31_RS08805

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
271,038 - -0.4
271,063 - -0.3
271,144 + EX31_RS08800 0.14 -1.0
271,144 + EX31_RS08800 0.14 -0.3
271,144 + EX31_RS08800 0.14 -1.6
271,145 - EX31_RS08800 0.14 +1.4
271,145 - EX31_RS08800 0.14 +0.2
271,145 - EX31_RS08800 0.14 +0.0
271,147 + EX31_RS08800 0.15 +1.0
271,152 + EX31_RS08800 0.18 +0.2
271,152 + EX31_RS08800 0.18 -0.2
271,153 - EX31_RS08800 0.18 +0.6
271,153 - EX31_RS08800 0.18 +1.0
271,249 + EX31_RS08800 0.66 +0.9
271,284 + EX31_RS08800 0.84 -0.5
271,285 - EX31_RS08800 0.84 +0.4
271,333 + +0.6
271,333 + +1.0
271,333 + -0.1
271,334 - -0.0
271,334 - +0.4
271,334 - -0.4
271,334 - -0.2
271,417 - -0.1
271,441 + -1.1
271,441 + -0.1
271,469 + -1.1
271,496 - +0.7
271,496 - -0.6
271,536 + EX31_RS08805 0.12 +0.1
271,536 + EX31_RS08805 0.12 -0.7
271,537 - EX31_RS08805 0.12 -1.0
271,537 - EX31_RS08805 0.12 -0.8
271,618 + EX31_RS08805 0.20 +0.2
271,618 + EX31_RS08805 0.20 -0.5
271,619 - EX31_RS08805 0.20 +0.6
271,619 - EX31_RS08805 0.20 +1.3
271,691 - EX31_RS08805 0.28 -0.4
271,739 - EX31_RS08805 0.32 +0.0
271,739 - EX31_RS08805 0.32 +0.5
271,739 - EX31_RS08805 0.32 -0.8
271,739 - EX31_RS08805 0.32 -0.8
271,746 + EX31_RS08805 0.33 -1.5
271,793 + EX31_RS08805 0.38 -0.5
271,793 + EX31_RS08805 0.38 -1.3
271,794 - EX31_RS08805 0.38 -0.1
271,794 - EX31_RS08805 0.38 -0.8
271,794 - EX31_RS08805 0.38 -1.3
271,794 - EX31_RS08805 0.38 -1.1
271,794 - EX31_RS08805 0.38 -0.8
271,794 - EX31_RS08805 0.38 -0.4
271,794 - EX31_RS08805 0.38 -0.2
271,794 - EX31_RS08805 0.38 +0.7
271,794 - EX31_RS08805 0.38 +0.3
271,794 - EX31_RS08805 0.38 +0.9
271,794 - EX31_RS08805 0.38 -1.0
271,794 - EX31_RS08805 0.38 -0.4
272,078 + EX31_RS08805 0.66 -0.4
272,078 + EX31_RS08805 0.66 -1.2
272,079 - EX31_RS08805 0.66 -0.6
272,079 - EX31_RS08805 0.66 -0.3
272,079 - EX31_RS08805 0.66 -1.9
272,079 - EX31_RS08805 0.66 +0.1
272,079 - EX31_RS08805 0.66 -0.4
272,079 - EX31_RS08805 0.66 -0.9
272,079 - EX31_RS08805 0.66 +0.0
272,079 - EX31_RS08805 0.66 -0.0
272,079 - EX31_RS08805 0.66 -0.8
272,079 - EX31_RS08805 0.66 -0.9
272,104 - EX31_RS08805 0.69 -0.5
272,104 - EX31_RS08805 0.69 +1.1
272,104 - EX31_RS08805 0.69 +1.6
272,104 - EX31_RS08805 0.69 +0.1
272,106 + EX31_RS08805 0.69 -0.4
272,107 - EX31_RS08805 0.69 -1.3
272,126 - EX31_RS08805 0.71 +0.9
272,154 - EX31_RS08805 0.74 -0.3
272,154 - EX31_RS08805 0.74 -0.4
272,154 - EX31_RS08805 0.74 +0.3
272,154 - EX31_RS08805 0.74 -0.6
272,154 - EX31_RS08805 0.74 -0.9
272,154 - EX31_RS08805 0.74 +0.8
272,251 + EX31_RS08805 0.84 +0.1
272,271 + EX31_RS08805 0.86 -0.4
272,272 - EX31_RS08805 0.86 +0.2
272,285 - EX31_RS08805 0.87 +0.7
272,288 - EX31_RS08805 0.87 -1.0
272,288 - EX31_RS08805 0.87 +1.9
272,288 - EX31_RS08805 0.87 +0.1
272,309 - EX31_RS08805 0.89 +0.7

Or see this region's nucleotide sequence