Strain Fitness in Rahnella sp. WP5 around EX31_RS19220

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19210 and EX31_RS19215 are separated by 322 nucleotidesEX31_RS19215 and EX31_RS19220 are separated by 24 nucleotidesEX31_RS19220 and EX31_RS19225 are separated by 193 nucleotides EX31_RS19210: EX31_RS19210 - nucleoid-associated protein YejK, at 438,550 to 439,554 _RS19210 EX31_RS19215: EX31_RS19215 - YejL family protein, at 439,877 to 440,104 _RS19215 EX31_RS19220: EX31_RS19220 - DUF3413 domain-containing protein, at 440,129 to 441,910 _RS19220 EX31_RS19225: EX31_RS19225 - glutathione S-transferase family protein, at 442,104 to 443,069 _RS19225 Position (kb) 440 441 442Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 439.136 kb on + strand, within EX31_RS19210at 439.137 kb on - strand, within EX31_RS19210at 439.177 kb on - strand, within EX31_RS19210at 439.207 kb on + strand, within EX31_RS19210at 439.208 kb on - strand, within EX31_RS19210at 439.208 kb on - strand, within EX31_RS19210at 439.211 kb on + strand, within EX31_RS19210at 439.212 kb on - strand, within EX31_RS19210at 439.212 kb on - strand, within EX31_RS19210at 439.395 kb on - strand, within EX31_RS19210at 439.395 kb on - strand, within EX31_RS19210at 439.395 kb on - strand, within EX31_RS19210at 439.415 kb on + strand, within EX31_RS19210at 439.415 kb on + strand, within EX31_RS19210at 439.415 kb on + strand, within EX31_RS19210at 439.416 kb on - strand, within EX31_RS19210at 439.416 kb on - strand, within EX31_RS19210at 439.473 kb on + strandat 439.474 kb on - strandat 439.587 kb on + strandat 439.588 kb on - strandat 439.659 kb on + strandat 439.660 kb on - strandat 439.660 kb on - strandat 439.660 kb on - strandat 439.689 kb on + strandat 439.745 kb on - strandat 439.831 kb on + strandat 439.836 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.871 kb on + strandat 439.876 kb on + strandat 439.876 kb on + strandat 439.876 kb on + strandat 439.895 kb on + strandat 439.993 kb on + strand, within EX31_RS19215at 439.993 kb on + strand, within EX31_RS19215at 440.008 kb on + strand, within EX31_RS19215at 440.008 kb on + strand, within EX31_RS19215at 440.011 kb on + strand, within EX31_RS19215at 440.011 kb on + strand, within EX31_RS19215at 440.014 kb on + strand, within EX31_RS19215at 440.082 kb on + strandat 440.861 kb on + strand, within EX31_RS19220at 440.872 kb on + strand, within EX31_RS19220at 440.872 kb on + strand, within EX31_RS19220at 440.905 kb on + strand, within EX31_RS19220at 440.905 kb on + strand, within EX31_RS19220at 440.905 kb on + strand, within EX31_RS19220at 440.923 kb on - strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.989 kb on + strand, within EX31_RS19220at 440.990 kb on - strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.074 kb on + strand, within EX31_RS19220at 441.075 kb on - strand, within EX31_RS19220at 441.075 kb on - strand, within EX31_RS19220at 441.075 kb on - strand, within EX31_RS19220at 441.075 kb on - strand, within EX31_RS19220at 441.075 kb on - strand, within EX31_RS19220at 441.075 kb on - strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.076 kb on + strand, within EX31_RS19220at 441.077 kb on - strand, within EX31_RS19220at 441.077 kb on - strand, within EX31_RS19220at 441.077 kb on - strand, within EX31_RS19220at 441.153 kb on + strand, within EX31_RS19220at 441.173 kb on - strand, within EX31_RS19220at 441.173 kb on - strand, within EX31_RS19220at 441.185 kb on + strand, within EX31_RS19220at 441.198 kb on + strand, within EX31_RS19220at 441.306 kb on - strand, within EX31_RS19220at 441.377 kb on - strand, within EX31_RS19220at 441.441 kb on + strand, within EX31_RS19220at 441.474 kb on + strand, within EX31_RS19220at 441.996 kb on - strandat 442.027 kb on + strandat 442.027 kb on + strandat 442.028 kb on - strandat 442.029 kb on + strandat 442.060 kb on + strandat 442.060 kb on + strandat 442.060 kb on + strandat 442.060 kb on + strandat 442.061 kb on - strandat 442.061 kb on - strandat 442.061 kb on - strandat 442.062 kb on + strandat 442.063 kb on - strandat 442.063 kb on - strandat 442.248 kb on + strand, within EX31_RS19225at 442.248 kb on + strand, within EX31_RS19225at 442.248 kb on + strand, within EX31_RS19225at 442.248 kb on + strand, within EX31_RS19225at 442.249 kb on - strand, within EX31_RS19225at 442.249 kb on - strand, within EX31_RS19225at 442.249 kb on - strand, within EX31_RS19225at 442.404 kb on + strand, within EX31_RS19225at 442.405 kb on - strand, within EX31_RS19225at 442.405 kb on - strand, within EX31_RS19225at 442.419 kb on + strand, within EX31_RS19225at 442.419 kb on + strand, within EX31_RS19225at 442.419 kb on + strand, within EX31_RS19225at 442.420 kb on - strand, within EX31_RS19225at 442.420 kb on - strand, within EX31_RS19225at 442.420 kb on - strand, within EX31_RS19225at 442.440 kb on + strand, within EX31_RS19225at 442.440 kb on + strand, within EX31_RS19225at 442.440 kb on + strand, within EX31_RS19225at 442.441 kb on - strand, within EX31_RS19225at 442.441 kb on - strand, within EX31_RS19225at 442.441 kb on - strand, within EX31_RS19225at 442.441 kb on - strand, within EX31_RS19225at 442.453 kb on + strand, within EX31_RS19225at 442.490 kb on + strand, within EX31_RS19225at 442.490 kb on + strand, within EX31_RS19225at 442.491 kb on - strand, within EX31_RS19225at 442.491 kb on - strand, within EX31_RS19225at 442.491 kb on - strand, within EX31_RS19225at 442.491 kb on - strand, within EX31_RS19225at 442.535 kb on + strand, within EX31_RS19225at 442.535 kb on + strand, within EX31_RS19225at 442.535 kb on + strand, within EX31_RS19225at 442.535 kb on + strand, within EX31_RS19225at 442.535 kb on + strand, within EX31_RS19225at 442.536 kb on - strand, within EX31_RS19225at 442.620 kb on + strand, within EX31_RS19225at 442.620 kb on + strand, within EX31_RS19225at 442.644 kb on + strand, within EX31_RS19225at 442.645 kb on - strand, within EX31_RS19225at 442.645 kb on - strand, within EX31_RS19225at 442.645 kb on - strand, within EX31_RS19225at 442.677 kb on + strand, within EX31_RS19225at 442.677 kb on + strand, within EX31_RS19225at 442.746 kb on + strand, within EX31_RS19225at 442.746 kb on + strand, within EX31_RS19225at 442.747 kb on - strand, within EX31_RS19225at 442.761 kb on + strand, within EX31_RS19225at 442.761 kb on + strand, within EX31_RS19225at 442.761 kb on + strand, within EX31_RS19225at 442.761 kb on + strand, within EX31_RS19225at 442.761 kb on + strand, within EX31_RS19225at 442.762 kb on - strand, within EX31_RS19225at 442.763 kb on + strand, within EX31_RS19225at 442.763 kb on + strand, within EX31_RS19225at 442.763 kb on + strand, within EX31_RS19225at 442.763 kb on + strand, within EX31_RS19225at 442.763 kb on + strand, within EX31_RS19225at 442.764 kb on - strand, within EX31_RS19225at 442.764 kb on - strand, within EX31_RS19225at 442.764 kb on - strand, within EX31_RS19225at 442.764 kb on - strand, within EX31_RS19225at 442.764 kb on - strand, within EX31_RS19225at 442.841 kb on + strand, within EX31_RS19225at 442.893 kb on + strand, within EX31_RS19225

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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439,136 + EX31_RS19210 0.58 -1.7
439,137 - EX31_RS19210 0.58 +0.2
439,177 - EX31_RS19210 0.62 +0.5
439,207 + EX31_RS19210 0.65 +0.8
439,208 - EX31_RS19210 0.65 -0.8
439,208 - EX31_RS19210 0.65 -0.4
439,211 + EX31_RS19210 0.66 +0.1
439,212 - EX31_RS19210 0.66 +0.2
439,212 - EX31_RS19210 0.66 -0.4
439,395 - EX31_RS19210 0.84 +0.7
439,395 - EX31_RS19210 0.84 +0.2
439,395 - EX31_RS19210 0.84 -0.3
439,415 + EX31_RS19210 0.86 +0.9
439,415 + EX31_RS19210 0.86 -0.9
439,415 + EX31_RS19210 0.86 -0.6
439,416 - EX31_RS19210 0.86 -0.4
439,416 - EX31_RS19210 0.86 +0.9
439,473 + +0.4
439,474 - -0.5
439,587 + +0.8
439,588 - -0.3
439,659 + -1.2
439,660 - -0.3
439,660 - +1.4
439,660 - -0.0
439,689 + -0.1
439,745 - -0.7
439,831 + -0.3
439,836 + -1.9
439,871 + -1.3
439,871 + +0.7
439,871 + +0.4
439,871 + -0.4
439,871 + +0.1
439,871 + -0.8
439,871 + -0.6
439,871 + -1.7
439,876 + +0.6
439,876 + -1.0
439,876 + +0.1
439,895 + +0.8
439,993 + EX31_RS19215 0.51 +0.1
439,993 + EX31_RS19215 0.51 -0.9
440,008 + EX31_RS19215 0.57 -0.6
440,008 + EX31_RS19215 0.57 -0.2
440,011 + EX31_RS19215 0.59 +0.5
440,011 + EX31_RS19215 0.59 +0.6
440,014 + EX31_RS19215 0.60 -0.5
440,082 + -1.1
440,861 + EX31_RS19220 0.41 -0.2
440,872 + EX31_RS19220 0.42 -2.0
440,872 + EX31_RS19220 0.42 -1.5
440,905 + EX31_RS19220 0.44 -1.6
440,905 + EX31_RS19220 0.44 +0.1
440,905 + EX31_RS19220 0.44 -1.0
440,923 - EX31_RS19220 0.45 -0.1
440,989 + EX31_RS19220 0.48 -1.4
440,989 + EX31_RS19220 0.48 -2.8
440,989 + EX31_RS19220 0.48 -1.6
440,989 + EX31_RS19220 0.48 -2.2
440,989 + EX31_RS19220 0.48 -1.1
440,989 + EX31_RS19220 0.48 -0.9
440,989 + EX31_RS19220 0.48 -1.7
440,990 - EX31_RS19220 0.48 -1.3
441,074 + EX31_RS19220 0.53 -1.3
441,074 + EX31_RS19220 0.53 -0.5
441,074 + EX31_RS19220 0.53 +0.4
441,074 + EX31_RS19220 0.53 -0.8
441,074 + EX31_RS19220 0.53 -1.0
441,074 + EX31_RS19220 0.53 +0.9
441,074 + EX31_RS19220 0.53 -2.3
441,074 + EX31_RS19220 0.53 -2.0
441,074 + EX31_RS19220 0.53 -1.3
441,074 + EX31_RS19220 0.53 -3.6
441,075 - EX31_RS19220 0.53 -2.8
441,075 - EX31_RS19220 0.53 +0.3
441,075 - EX31_RS19220 0.53 -3.2
441,075 - EX31_RS19220 0.53 -2.0
441,075 - EX31_RS19220 0.53 -1.3
441,075 - EX31_RS19220 0.53 -0.2
441,076 + EX31_RS19220 0.53 -1.7
441,076 + EX31_RS19220 0.53 -0.5
441,076 + EX31_RS19220 0.53 +0.6
441,076 + EX31_RS19220 0.53 -1.6
441,076 + EX31_RS19220 0.53 -1.6
441,076 + EX31_RS19220 0.53 +0.2
441,076 + EX31_RS19220 0.53 -1.6
441,076 + EX31_RS19220 0.53 -1.2
441,077 - EX31_RS19220 0.53 +0.4
441,077 - EX31_RS19220 0.53 -0.2
441,077 - EX31_RS19220 0.53 -1.2
441,153 + EX31_RS19220 0.57 -0.6
441,173 - EX31_RS19220 0.59 +0.3
441,173 - EX31_RS19220 0.59 -2.9
441,185 + EX31_RS19220 0.59 -1.9
441,198 + EX31_RS19220 0.60 -1.7
441,306 - EX31_RS19220 0.66 +0.4
441,377 - EX31_RS19220 0.70 +0.0
441,441 + EX31_RS19220 0.74 -0.1
441,474 + EX31_RS19220 0.75 -1.9
441,996 - -0.5
442,027 + -1.0
442,027 + -0.4
442,028 - -0.5
442,029 + -0.3
442,060 + +0.2
442,060 + -1.3
442,060 + +0.3
442,060 + -0.5
442,061 - +0.2
442,061 - +0.4
442,061 - -1.5
442,062 + -0.3
442,063 - -1.1
442,063 - +0.3
442,248 + EX31_RS19225 0.15 -1.7
442,248 + EX31_RS19225 0.15 +1.0
442,248 + EX31_RS19225 0.15 -1.0
442,248 + EX31_RS19225 0.15 +0.6
442,249 - EX31_RS19225 0.15 -1.2
442,249 - EX31_RS19225 0.15 +0.2
442,249 - EX31_RS19225 0.15 -1.1
442,404 + EX31_RS19225 0.31 -0.4
442,405 - EX31_RS19225 0.31 +0.4
442,405 - EX31_RS19225 0.31 -1.0
442,419 + EX31_RS19225 0.33 -1.3
442,419 + EX31_RS19225 0.33 +0.7
442,419 + EX31_RS19225 0.33 +0.8
442,420 - EX31_RS19225 0.33 +0.3
442,420 - EX31_RS19225 0.33 +0.8
442,420 - EX31_RS19225 0.33 -0.3
442,440 + EX31_RS19225 0.35 +0.3
442,440 + EX31_RS19225 0.35 -1.1
442,440 + EX31_RS19225 0.35 +0.5
442,441 - EX31_RS19225 0.35 -1.4
442,441 - EX31_RS19225 0.35 -1.3
442,441 - EX31_RS19225 0.35 +0.3
442,441 - EX31_RS19225 0.35 +0.1
442,453 + EX31_RS19225 0.36 +0.7
442,490 + EX31_RS19225 0.40 +0.5
442,490 + EX31_RS19225 0.40 +0.4
442,491 - EX31_RS19225 0.40 +0.1
442,491 - EX31_RS19225 0.40 +0.2
442,491 - EX31_RS19225 0.40 -0.9
442,491 - EX31_RS19225 0.40 +1.8
442,535 + EX31_RS19225 0.45 -0.4
442,535 + EX31_RS19225 0.45 -1.9
442,535 + EX31_RS19225 0.45 +0.4
442,535 + EX31_RS19225 0.45 -0.6
442,535 + EX31_RS19225 0.45 +0.5
442,536 - EX31_RS19225 0.45 -1.7
442,620 + EX31_RS19225 0.53 -0.6
442,620 + EX31_RS19225 0.53 +0.3
442,644 + EX31_RS19225 0.56 +0.7
442,645 - EX31_RS19225 0.56 +1.0
442,645 - EX31_RS19225 0.56 -1.2
442,645 - EX31_RS19225 0.56 -2.0
442,677 + EX31_RS19225 0.59 +0.8
442,677 + EX31_RS19225 0.59 +0.8
442,746 + EX31_RS19225 0.66 +0.5
442,746 + EX31_RS19225 0.66 -0.0
442,747 - EX31_RS19225 0.67 -0.4
442,761 + EX31_RS19225 0.68 +0.1
442,761 + EX31_RS19225 0.68 +0.8
442,761 + EX31_RS19225 0.68 -0.4
442,761 + EX31_RS19225 0.68 +0.1
442,761 + EX31_RS19225 0.68 -1.4
442,762 - EX31_RS19225 0.68 -1.2
442,763 + EX31_RS19225 0.68 -0.1
442,763 + EX31_RS19225 0.68 -0.9
442,763 + EX31_RS19225 0.68 +0.7
442,763 + EX31_RS19225 0.68 -1.1
442,763 + EX31_RS19225 0.68 +0.1
442,764 - EX31_RS19225 0.68 +0.5
442,764 - EX31_RS19225 0.68 +0.7
442,764 - EX31_RS19225 0.68 +0.5
442,764 - EX31_RS19225 0.68 -1.2
442,764 - EX31_RS19225 0.68 +0.4
442,841 + EX31_RS19225 0.76 -0.9
442,893 + EX31_RS19225 0.82 +0.7

Or see this region's nucleotide sequence