Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16815 and EX31_RS16820 are separated by 322 nucleotides EX31_RS16820 and EX31_RS16825 are separated by 99 nucleotides EX31_RS16825 and EX31_RS16830 are separated by 71 nucleotides
EX31_RS16815: EX31_RS16815 - phosphomethylpyrimidine synthase ThiC, at 17,085 to 19,049
_RS16815
EX31_RS16820: EX31_RS16820 - Rsd/AlgQ family anti-sigma factor, at 19,372 to 19,887
_RS16820
EX31_RS16825: EX31_RS16825 - NAD(+) diphosphatase, at 19,987 to 20,763
_RS16825
EX31_RS16830: EX31_RS16830 - uroporphyrinogen decarboxylase, at 20,835 to 21,899
_RS16830
Position (kb) 19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.383 kb on + strand, within EX31_RS16815 at 18.384 kb on - strand, within EX31_RS16815 at 18.432 kb on - strand, within EX31_RS16815 at 18.671 kb on + strand, within EX31_RS16815 at 18.753 kb on - strand, within EX31_RS16815 at 18.784 kb on + strand, within EX31_RS16815 at 18.785 kb on - strand, within EX31_RS16815 at 18.802 kb on + strand, within EX31_RS16815 at 18.803 kb on - strand, within EX31_RS16815 at 18.922 kb on + strand at 18.922 kb on + strand at 18.922 kb on + strand at 18.922 kb on + strand at 18.922 kb on + strand at 18.923 kb on - strand at 18.926 kb on + strand at 18.927 kb on - strand at 18.927 kb on - strand at 18.969 kb on - strand at 19.049 kb on + strand at 19.049 kb on + strand at 19.049 kb on + strand at 19.050 kb on - strand at 19.180 kb on + strand at 19.180 kb on + strand at 19.180 kb on + strand at 19.180 kb on + strand at 19.180 kb on + strand at 19.180 kb on + strand at 19.180 kb on + strand at 19.180 kb on + strand at 19.180 kb on + strand at 19.181 kb on - strand at 19.181 kb on - strand at 19.181 kb on - strand at 19.181 kb on - strand at 19.181 kb on - strand at 19.181 kb on - strand at 19.202 kb on - strand at 19.204 kb on + strand at 19.205 kb on - strand at 19.235 kb on - strand at 19.253 kb on + strand at 19.278 kb on + strand at 19.279 kb on - strand at 19.303 kb on + strand at 19.304 kb on - strand at 19.305 kb on + strand at 19.305 kb on + strand at 19.305 kb on + strand at 19.305 kb on + strand at 19.305 kb on + strand at 19.306 kb on - strand at 19.306 kb on - strand at 19.306 kb on - strand at 19.306 kb on - strand at 19.306 kb on - strand at 19.306 kb on - strand at 19.306 kb on - strand at 19.320 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.325 kb on + strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.326 kb on - strand at 19.331 kb on + strand at 19.331 kb on + strand at 19.332 kb on - strand at 19.357 kb on + strand at 19.357 kb on + strand at 19.358 kb on - strand at 19.358 kb on - strand at 19.447 kb on - strand, within EX31_RS16820 at 19.447 kb on - strand, within EX31_RS16820 at 19.450 kb on + strand, within EX31_RS16820 at 19.481 kb on - strand, within EX31_RS16820 at 19.481 kb on - strand, within EX31_RS16820 at 19.481 kb on - strand, within EX31_RS16820 at 19.536 kb on + strand, within EX31_RS16820 at 19.554 kb on - strand, within EX31_RS16820 at 19.575 kb on + strand, within EX31_RS16820 at 19.575 kb on + strand, within EX31_RS16820 at 19.576 kb on - strand, within EX31_RS16820 at 19.576 kb on - strand, within EX31_RS16820 at 19.576 kb on - strand, within EX31_RS16820 at 19.585 kb on - strand, within EX31_RS16820 at 19.605 kb on - strand, within EX31_RS16820 at 19.671 kb on - strand, within EX31_RS16820 at 19.697 kb on + strand, within EX31_RS16820 at 19.698 kb on - strand, within EX31_RS16820 at 19.698 kb on - strand, within EX31_RS16820 at 19.749 kb on + strand, within EX31_RS16820 at 19.749 kb on + strand, within EX31_RS16820 at 19.749 kb on + strand, within EX31_RS16820 at 19.749 kb on + strand, within EX31_RS16820 at 19.750 kb on - strand, within EX31_RS16820 at 19.750 kb on - strand, within EX31_RS16820 at 19.750 kb on - strand, within EX31_RS16820 at 19.750 kb on - strand, within EX31_RS16820 at 19.750 kb on - strand, within EX31_RS16820 at 19.761 kb on + strand, within EX31_RS16820 at 19.790 kb on + strand, within EX31_RS16820 at 19.790 kb on + strand, within EX31_RS16820 at 19.791 kb on - strand, within EX31_RS16820 at 19.834 kb on + strand, within EX31_RS16820 at 19.834 kb on + strand, within EX31_RS16820 at 19.835 kb on - strand, within EX31_RS16820 at 19.843 kb on - strand at 19.843 kb on - strand at 19.882 kb on + strand at 19.882 kb on + strand at 19.882 kb on + strand at 19.883 kb on - strand at 19.883 kb on - strand at 19.883 kb on - strand at 19.883 kb on - strand at 19.883 kb on - strand at 19.915 kb on + strand at 19.929 kb on + strand at 19.929 kb on + strand at 19.929 kb on + strand at 19.930 kb on - strand at 19.930 kb on - strand at 19.930 kb on - strand at 19.932 kb on + strand at 19.932 kb on + strand at 19.933 kb on - strand at 19.933 kb on - strand at 19.936 kb on + strand at 19.936 kb on + strand at 19.936 kb on + strand at 19.936 kb on + strand at 19.937 kb on - strand at 19.937 kb on - strand at 19.940 kb on + strand at 19.940 kb on + strand at 19.940 kb on + strand at 19.941 kb on - strand at 19.972 kb on + strand at 19.972 kb on + strand at 19.973 kb on - strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.987 kb on - strand at 19.994 kb on + strand at 19.994 kb on + strand at 19.995 kb on - strand at 19.995 kb on - strand at 20.002 kb on - strand at 20.048 kb on + strand at 20.048 kb on + strand at 20.048 kb on + strand at 20.049 kb on - strand at 20.049 kb on - strand at 20.049 kb on - strand at 20.049 kb on - strand at 20.049 kb on - strand at 20.049 kb on - strand at 20.049 kb on - strand at 20.049 kb on - strand at 20.049 kb on - strand at 20.219 kb on + strand, within EX31_RS16825 at 20.220 kb on - strand, within EX31_RS16825 at 20.220 kb on - strand, within EX31_RS16825 at 20.353 kb on + strand, within EX31_RS16825 at 20.353 kb on + strand, within EX31_RS16825 at 20.353 kb on + strand, within EX31_RS16825 at 20.353 kb on + strand, within EX31_RS16825 at 20.354 kb on - strand, within EX31_RS16825 at 20.354 kb on - strand, within EX31_RS16825 at 20.354 kb on - strand, within EX31_RS16825 at 20.389 kb on - strand, within EX31_RS16825 at 20.436 kb on + strand, within EX31_RS16825 at 20.437 kb on - strand, within EX31_RS16825 at 20.437 kb on - strand, within EX31_RS16825 at 20.443 kb on - strand, within EX31_RS16825 at 20.523 kb on + strand, within EX31_RS16825 at 20.523 kb on + strand, within EX31_RS16825 at 20.523 kb on + strand, within EX31_RS16825 at 20.548 kb on + strand, within EX31_RS16825 at 20.548 kb on + strand, within EX31_RS16825 at 20.548 kb on + strand, within EX31_RS16825 at 20.549 kb on - strand, within EX31_RS16825 at 20.549 kb on - strand, within EX31_RS16825 at 20.549 kb on - strand, within EX31_RS16825 at 20.549 kb on - strand, within EX31_RS16825 at 20.624 kb on + strand, within EX31_RS16825 at 20.624 kb on + strand, within EX31_RS16825 at 20.624 kb on + strand, within EX31_RS16825 at 20.624 kb on + strand, within EX31_RS16825 at 20.624 kb on + strand, within EX31_RS16825 at 20.624 kb on + strand, within EX31_RS16825 at 20.624 kb on + strand, within EX31_RS16825 at 20.624 kb on + strand, within EX31_RS16825 at 20.624 kb on + strand, within EX31_RS16825 at 20.624 kb on + strand, within EX31_RS16825 at 20.624 kb on + strand, within EX31_RS16825 at 20.625 kb on - strand, within EX31_RS16825 at 20.625 kb on - strand, within EX31_RS16825 at 20.625 kb on - strand, within EX31_RS16825 at 20.625 kb on - strand, within EX31_RS16825 at 20.761 kb on + strand at 20.761 kb on + strand at 20.761 kb on + strand at 20.761 kb on + strand at 20.762 kb on - strand at 20.762 kb on - strand at 20.774 kb on - strand at 20.774 kb on - strand at 20.774 kb on - strand at 20.780 kb on + strand at 20.780 kb on + strand at 20.780 kb on + strand at 20.780 kb on + strand at 20.780 kb on + strand at 20.780 kb on + strand at 20.780 kb on + strand at 20.780 kb on + strand at 20.780 kb on + strand at 20.780 kb on + strand at 20.781 kb on - strand at 20.781 kb on - strand at 20.781 kb on - strand at 20.781 kb on - strand at 20.781 kb on - strand at 20.781 kb on - strand at 20.781 kb on - strand at 20.781 kb on - strand at 20.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 18,383 + EX31_RS16815 0.66 -1.3 18,384 - EX31_RS16815 0.66 -0.2 18,432 - EX31_RS16815 0.69 +0.2 18,671 + EX31_RS16815 0.81 +0.1 18,753 - EX31_RS16815 0.85 +0.3 18,784 + EX31_RS16815 0.86 -1.3 18,785 - EX31_RS16815 0.87 -0.6 18,802 + EX31_RS16815 0.87 +0.7 18,803 - EX31_RS16815 0.87 -0.4 18,922 + +1.4 18,922 + +0.6 18,922 + -0.1 18,922 + -0.3 18,922 + +0.3 18,923 - -1.2 18,926 + +0.2 18,927 - -0.2 18,927 - -1.0 18,969 - -0.1 19,049 + -0.4 19,049 + -1.9 19,049 + +0.4 19,050 - -0.7 19,180 + -0.6 19,180 + -1.0 19,180 + -0.7 19,180 + +0.8 19,180 + -1.5 19,180 + -0.3 19,180 + -0.4 19,180 + -1.2 19,180 + -0.7 19,181 - -1.2 19,181 - +0.3 19,181 - +0.2 19,181 - +1.1 19,181 - +0.7 19,181 - -0.1 19,202 - -0.4 19,204 + +1.1 19,205 - +0.1 19,235 - +0.4 19,253 + +0.4 19,278 + -1.2 19,279 - -1.9 19,303 + -1.2 19,304 - +0.0 19,305 + +0.1 19,305 + +0.2 19,305 + +1.1 19,305 + +0.2 19,305 + +0.4 19,306 - +0.5 19,306 - -0.2 19,306 - +0.4 19,306 - +0.3 19,306 - -0.0 19,306 - +0.8 19,306 - -0.1 19,320 + -0.4 19,325 + -1.1 19,325 + -1.8 19,325 + +0.6 19,326 - +1.2 19,326 - +0.4 19,326 - +1.3 19,331 + -0.5 19,331 + +1.3 19,332 - +1.2 19,357 + +0.6 19,357 + +1.3 19,358 - +2.2 19,358 - +1.1 19,447 - EX31_RS16820 0.15 -0.7 19,447 - EX31_RS16820 0.15 +1.2 19,450 + EX31_RS16820 0.15 +1.3 19,481 - EX31_RS16820 0.21 +0.9 19,481 - EX31_RS16820 0.21 +0.9 19,481 - EX31_RS16820 0.21 +1.9 19,536 + EX31_RS16820 0.32 +0.7 19,554 - EX31_RS16820 0.35 +1.2 19,575 + EX31_RS16820 0.39 +2.3 19,575 + EX31_RS16820 0.39 +1.6 19,576 - EX31_RS16820 0.40 +2.0 19,576 - EX31_RS16820 0.40 +1.0 19,576 - EX31_RS16820 0.40 +0.9 19,585 - EX31_RS16820 0.41 +0.8 19,605 - EX31_RS16820 0.45 +0.5 19,671 - EX31_RS16820 0.58 +1.5 19,697 + EX31_RS16820 0.63 -0.0 19,698 - EX31_RS16820 0.63 +1.4 19,698 - EX31_RS16820 0.63 +0.9 19,749 + EX31_RS16820 0.73 +2.2 19,749 + EX31_RS16820 0.73 +0.8 19,749 + EX31_RS16820 0.73 +0.5 19,749 + EX31_RS16820 0.73 +1.0 19,750 - EX31_RS16820 0.73 +1.3 19,750 - EX31_RS16820 0.73 +2.2 19,750 - EX31_RS16820 0.73 +1.6 19,750 - EX31_RS16820 0.73 +1.9 19,750 - EX31_RS16820 0.73 +0.7 19,761 + EX31_RS16820 0.75 +0.6 19,790 + EX31_RS16820 0.81 +0.4 19,790 + EX31_RS16820 0.81 +0.9 19,791 - EX31_RS16820 0.81 +0.5 19,834 + EX31_RS16820 0.90 +1.3 19,834 + EX31_RS16820 0.90 +0.7 19,835 - EX31_RS16820 0.90 +0.6 19,843 - +1.2 19,843 - +0.5 19,882 + +1.0 19,882 + +0.8 19,882 + +1.7 19,883 - -0.2 19,883 - +2.1 19,883 - +0.8 19,883 - +0.9 19,883 - +2.1 19,915 + +0.4 19,929 + +0.5 19,929 + +0.8 19,929 + +0.6 19,930 - +1.7 19,930 - +0.8 19,930 - +2.1 19,932 + +2.0 19,932 + +0.7 19,933 - +2.2 19,933 - +0.7 19,936 + +1.6 19,936 + +0.9 19,936 + +0.1 19,936 + +0.6 19,937 - +2.1 19,937 - +0.9 19,940 + +0.9 19,940 + +0.4 19,940 + +1.9 19,941 - +1.0 19,972 + +1.6 19,972 + +1.2 19,973 - +1.0 19,986 + +1.2 19,986 + +0.6 19,987 - +2.3 19,994 + +1.0 19,994 + +1.9 19,995 - +0.8 19,995 - +1.7 20,002 - +2.1 20,048 + +1.3 20,048 + -0.2 20,048 + +0.5 20,049 - +0.8 20,049 - +0.2 20,049 - -0.2 20,049 - +1.3 20,049 - +0.7 20,049 - +0.6 20,049 - +0.7 20,049 - +1.2 20,049 - +2.0 20,219 + EX31_RS16825 0.30 +1.6 20,220 - EX31_RS16825 0.30 +1.3 20,220 - EX31_RS16825 0.30 +0.4 20,353 + EX31_RS16825 0.47 +1.3 20,353 + EX31_RS16825 0.47 +0.9 20,353 + EX31_RS16825 0.47 +0.5 20,353 + EX31_RS16825 0.47 +2.1 20,354 - EX31_RS16825 0.47 +1.3 20,354 - EX31_RS16825 0.47 +0.9 20,354 - EX31_RS16825 0.47 +0.5 20,389 - EX31_RS16825 0.52 +2.0 20,436 + EX31_RS16825 0.58 +0.6 20,437 - EX31_RS16825 0.58 +0.4 20,437 - EX31_RS16825 0.58 +0.6 20,443 - EX31_RS16825 0.59 +0.1 20,523 + EX31_RS16825 0.69 +0.3 20,523 + EX31_RS16825 0.69 +0.9 20,523 + EX31_RS16825 0.69 +1.3 20,548 + EX31_RS16825 0.72 +1.4 20,548 + EX31_RS16825 0.72 +0.7 20,548 + EX31_RS16825 0.72 +1.0 20,549 - EX31_RS16825 0.72 +1.3 20,549 - EX31_RS16825 0.72 +1.8 20,549 - EX31_RS16825 0.72 +0.7 20,549 - EX31_RS16825 0.72 +0.5 20,624 + EX31_RS16825 0.82 +0.3 20,624 + EX31_RS16825 0.82 +0.8 20,624 + EX31_RS16825 0.82 +1.6 20,624 + EX31_RS16825 0.82 +1.1 20,624 + EX31_RS16825 0.82 +0.7 20,624 + EX31_RS16825 0.82 +1.7 20,624 + EX31_RS16825 0.82 +0.9 20,624 + EX31_RS16825 0.82 +0.6 20,624 + EX31_RS16825 0.82 +1.0 20,624 + EX31_RS16825 0.82 +0.9 20,624 + EX31_RS16825 0.82 +1.2 20,625 - EX31_RS16825 0.82 +1.7 20,625 - EX31_RS16825 0.82 -0.0 20,625 - EX31_RS16825 0.82 -0.1 20,625 - EX31_RS16825 0.82 +2.6 20,761 + +1.6 20,761 + +0.1 20,761 + +1.4 20,761 + +1.0 20,762 - +1.1 20,762 - +0.8 20,774 - +0.2 20,774 - -0.2 20,774 - -0.2 20,780 + -0.4 20,780 + +0.6 20,780 + +0.3 20,780 + +2.1 20,780 + +1.1 20,780 + +1.0 20,780 + -0.1 20,780 + +0.6 20,780 + +1.8 20,780 + +2.0 20,781 - -0.2 20,781 - +1.5 20,781 - -0.2 20,781 - +0.0 20,781 - -1.3 20,781 - +0.7 20,781 - +1.2 20,781 - +1.5 20,781 - +1.3
Or see this region's nucleotide sequence