Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13080 and EX31_RS13085 are separated by 76 nucleotides EX31_RS13085 and EX31_RS13090 are separated by 170 nucleotides
EX31_RS13080: EX31_RS13080 - SecY-interacting protein, at 42,780 to 43,331
_RS13080
EX31_RS13085: EX31_RS13085 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 43,408 to 44,253
_RS13085
EX31_RS13090: EX31_RS13090 - LOG family protein, at 44,424 to 45,788
_RS13090
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 42.450 kb on - strand at 42.450 kb on - strand at 42.605 kb on - strand at 42.675 kb on + strand at 42.676 kb on - strand at 42.809 kb on + strand at 42.809 kb on + strand at 42.809 kb on + strand at 42.809 kb on + strand at 42.809 kb on + strand at 42.810 kb on - strand at 42.810 kb on - strand at 42.837 kb on + strand, within EX31_RS13080 at 42.837 kb on + strand, within EX31_RS13080 at 42.837 kb on + strand, within EX31_RS13080 at 42.837 kb on + strand, within EX31_RS13080 at 42.837 kb on + strand, within EX31_RS13080 at 42.837 kb on + strand, within EX31_RS13080 at 42.838 kb on - strand, within EX31_RS13080 at 42.838 kb on - strand, within EX31_RS13080 at 42.838 kb on - strand, within EX31_RS13080 at 42.838 kb on - strand, within EX31_RS13080 at 42.838 kb on - strand, within EX31_RS13080 at 42.838 kb on - strand, within EX31_RS13080 at 42.839 kb on + strand, within EX31_RS13080 at 42.839 kb on + strand, within EX31_RS13080 at 42.839 kb on + strand, within EX31_RS13080 at 42.839 kb on + strand, within EX31_RS13080 at 42.839 kb on + strand, within EX31_RS13080 at 42.839 kb on + strand, within EX31_RS13080 at 42.839 kb on + strand, within EX31_RS13080 at 42.839 kb on + strand, within EX31_RS13080 at 42.839 kb on + strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.840 kb on - strand, within EX31_RS13080 at 42.879 kb on - strand, within EX31_RS13080 at 43.078 kb on + strand, within EX31_RS13080 at 43.078 kb on + strand, within EX31_RS13080 at 43.079 kb on - strand, within EX31_RS13080 at 43.079 kb on - strand, within EX31_RS13080 at 43.079 kb on - strand, within EX31_RS13080 at 43.091 kb on - strand, within EX31_RS13080 at 43.119 kb on + strand, within EX31_RS13080 at 43.120 kb on - strand, within EX31_RS13080 at 43.137 kb on + strand, within EX31_RS13080 at 43.138 kb on - strand, within EX31_RS13080 at 43.177 kb on - strand, within EX31_RS13080 at 43.285 kb on + strand at 43.285 kb on + strand at 43.285 kb on + strand at 43.285 kb on + strand at 43.285 kb on + strand at 43.285 kb on + strand at 43.285 kb on + strand at 43.286 kb on - strand at 43.286 kb on - strand at 43.286 kb on - strand at 43.286 kb on - strand at 43.286 kb on - strand at 43.286 kb on - strand at 43.286 kb on - strand at 43.286 kb on - strand at 43.311 kb on + strand at 43.312 kb on - strand at 43.331 kb on + strand at 43.331 kb on + strand at 43.331 kb on + strand at 43.331 kb on + strand at 43.332 kb on - strand at 43.332 kb on - strand at 43.332 kb on - strand at 43.366 kb on + strand at 43.366 kb on + strand at 43.366 kb on + strand at 43.366 kb on + strand at 43.367 kb on - strand at 43.367 kb on - strand at 43.367 kb on - strand at 43.373 kb on + strand at 43.373 kb on + strand at 43.380 kb on + strand at 43.380 kb on + strand at 43.381 kb on - strand at 43.381 kb on - strand at 43.381 kb on - strand at 43.381 kb on - strand at 43.385 kb on + strand at 43.385 kb on + strand at 43.385 kb on + strand at 43.385 kb on + strand at 43.385 kb on + strand at 43.385 kb on + strand at 43.385 kb on + strand at 43.385 kb on + strand at 43.385 kb on + strand at 43.386 kb on - strand at 43.386 kb on - strand at 43.386 kb on - strand at 43.386 kb on - strand at 43.386 kb on - strand at 43.386 kb on - strand at 43.389 kb on + strand at 43.389 kb on + strand at 43.390 kb on - strand at 43.390 kb on - strand at 43.390 kb on - strand at 43.396 kb on + strand at 43.396 kb on + strand at 43.425 kb on + strand at 43.456 kb on - strand at 43.461 kb on + strand at 43.461 kb on + strand at 43.462 kb on - strand at 43.462 kb on - strand at 43.462 kb on - strand at 43.468 kb on + strand at 43.468 kb on + strand at 43.468 kb on + strand at 43.468 kb on + strand at 43.469 kb on - strand at 43.469 kb on - strand at 43.469 kb on - strand at 43.469 kb on - strand at 43.480 kb on + strand at 43.481 kb on - strand at 43.494 kb on - strand, within EX31_RS13085 at 43.538 kb on + strand, within EX31_RS13085 at 43.538 kb on + strand, within EX31_RS13085 at 43.538 kb on + strand, within EX31_RS13085 at 43.539 kb on - strand, within EX31_RS13085 at 43.539 kb on - strand, within EX31_RS13085 at 43.539 kb on - strand, within EX31_RS13085 at 43.539 kb on - strand, within EX31_RS13085 at 43.539 kb on - strand, within EX31_RS13085 at 43.539 kb on - strand, within EX31_RS13085 at 43.572 kb on + strand, within EX31_RS13085 at 43.572 kb on + strand, within EX31_RS13085 at 43.572 kb on + strand, within EX31_RS13085 at 43.573 kb on - strand, within EX31_RS13085 at 43.585 kb on + strand, within EX31_RS13085 at 43.586 kb on - strand, within EX31_RS13085 at 43.586 kb on - strand, within EX31_RS13085 at 43.586 kb on - strand, within EX31_RS13085 at 43.586 kb on - strand, within EX31_RS13085 at 43.694 kb on - strand, within EX31_RS13085 at 43.751 kb on + strand, within EX31_RS13085 at 43.752 kb on - strand, within EX31_RS13085 at 43.763 kb on + strand, within EX31_RS13085 at 43.763 kb on + strand, within EX31_RS13085 at 43.763 kb on + strand, within EX31_RS13085 at 43.763 kb on + strand, within EX31_RS13085 at 43.763 kb on + strand, within EX31_RS13085 at 43.763 kb on + strand, within EX31_RS13085 at 43.763 kb on + strand, within EX31_RS13085 at 43.763 kb on + strand, within EX31_RS13085 at 43.763 kb on + strand, within EX31_RS13085 at 43.763 kb on + strand, within EX31_RS13085 at 43.764 kb on - strand, within EX31_RS13085 at 43.764 kb on - strand, within EX31_RS13085 at 43.885 kb on + strand, within EX31_RS13085 at 43.885 kb on + strand, within EX31_RS13085 at 43.886 kb on - strand, within EX31_RS13085 at 43.917 kb on + strand, within EX31_RS13085 at 43.917 kb on + strand, within EX31_RS13085 at 43.918 kb on - strand, within EX31_RS13085 at 43.918 kb on - strand, within EX31_RS13085 at 43.918 kb on - strand, within EX31_RS13085 at 44.115 kb on + strand, within EX31_RS13085 at 44.167 kb on + strand, within EX31_RS13085 at 44.168 kb on - strand, within EX31_RS13085 at 44.169 kb on + strand at 44.170 kb on - strand at 44.170 kb on - strand at 44.251 kb on + strand at 44.252 kb on - strand at 44.252 kb on - strand at 44.281 kb on - strand at 44.301 kb on - strand at 44.326 kb on + strand at 44.349 kb on + strand at 44.381 kb on + strand at 44.382 kb on - strand at 44.429 kb on + strand at 44.429 kb on + strand at 44.435 kb on + strand at 44.435 kb on + strand at 44.435 kb on + strand at 44.435 kb on + strand at 44.436 kb on - strand at 44.436 kb on - strand at 44.436 kb on - strand at 44.436 kb on - strand at 44.436 kb on - strand at 44.436 kb on - strand at 44.446 kb on + strand at 44.495 kb on + strand at 44.514 kb on + strand at 44.550 kb on - strand at 44.550 kb on - strand at 44.610 kb on - strand, within EX31_RS13090 at 44.732 kb on + strand, within EX31_RS13090 at 44.787 kb on - strand, within EX31_RS13090 at 44.825 kb on + strand, within EX31_RS13090 at 44.826 kb on - strand, within EX31_RS13090 at 44.826 kb on - strand, within EX31_RS13090 at 44.830 kb on + strand, within EX31_RS13090 at 44.830 kb on + strand, within EX31_RS13090 at 44.830 kb on + strand, within EX31_RS13090 at 44.830 kb on + strand, within EX31_RS13090 at 44.830 kb on + strand, within EX31_RS13090 at 44.830 kb on + strand, within EX31_RS13090 at 44.831 kb on - strand, within EX31_RS13090 at 44.831 kb on - strand, within EX31_RS13090 at 44.831 kb on - strand, within EX31_RS13090 at 44.901 kb on - strand, within EX31_RS13090 at 44.901 kb on - strand, within EX31_RS13090 at 44.919 kb on + strand, within EX31_RS13090 at 44.919 kb on + strand, within EX31_RS13090 at 44.919 kb on + strand, within EX31_RS13090 at 44.919 kb on + strand, within EX31_RS13090 at 44.920 kb on - strand, within EX31_RS13090 at 44.920 kb on - strand, within EX31_RS13090 at 44.969 kb on + strand, within EX31_RS13090 at 44.969 kb on + strand, within EX31_RS13090 at 45.081 kb on - strand, within EX31_RS13090 at 45.099 kb on - strand, within EX31_RS13090 at 45.182 kb on + strand, within EX31_RS13090 at 45.182 kb on + strand, within EX31_RS13090 at 45.182 kb on + strand, within EX31_RS13090 at 45.183 kb on - strand, within EX31_RS13090 at 45.183 kb on - strand, within EX31_RS13090 at 45.183 kb on - strand, within EX31_RS13090 at 45.199 kb on + strand, within EX31_RS13090 at 45.199 kb on + strand, within EX31_RS13090 at 45.199 kb on + strand, within EX31_RS13090 at 45.199 kb on + strand, within EX31_RS13090 at 45.199 kb on + strand, within EX31_RS13090 at 45.200 kb on - strand, within EX31_RS13090 at 45.217 kb on + strand, within EX31_RS13090 at 45.217 kb on + strand, within EX31_RS13090 at 45.217 kb on + strand, within EX31_RS13090 at 45.218 kb on - strand, within EX31_RS13090 at 45.218 kb on - strand, within EX31_RS13090 at 45.218 kb on - strand, within EX31_RS13090 at 45.222 kb on + strand, within EX31_RS13090 at 45.222 kb on + strand, within EX31_RS13090 at 45.222 kb on + strand, within EX31_RS13090 at 45.223 kb on - strand, within EX31_RS13090 at 45.223 kb on - strand, within EX31_RS13090 at 45.223 kb on - strand, within EX31_RS13090 at 45.223 kb on - strand, within EX31_RS13090 at 45.223 kb on - strand, within EX31_RS13090
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 42,450 - +1.7 42,450 - +1.3 42,605 - +0.1 42,675 + -0.8 42,676 - +0.9 42,809 + -0.4 42,809 + -0.4 42,809 + +1.1 42,809 + +0.5 42,809 + +0.3 42,810 - +0.2 42,810 - +0.6 42,837 + EX31_RS13080 0.10 -1.0 42,837 + EX31_RS13080 0.10 +0.6 42,837 + EX31_RS13080 0.10 +0.1 42,837 + EX31_RS13080 0.10 +0.7 42,837 + EX31_RS13080 0.10 -0.8 42,837 + EX31_RS13080 0.10 -1.2 42,838 - EX31_RS13080 0.11 -0.9 42,838 - EX31_RS13080 0.11 -1.7 42,838 - EX31_RS13080 0.11 +0.2 42,838 - EX31_RS13080 0.11 -0.9 42,838 - EX31_RS13080 0.11 +1.9 42,838 - EX31_RS13080 0.11 -0.2 42,839 + EX31_RS13080 0.11 +0.9 42,839 + EX31_RS13080 0.11 -0.1 42,839 + EX31_RS13080 0.11 -0.2 42,839 + EX31_RS13080 0.11 +0.8 42,839 + EX31_RS13080 0.11 -0.9 42,839 + EX31_RS13080 0.11 +0.5 42,839 + EX31_RS13080 0.11 -0.4 42,839 + EX31_RS13080 0.11 -0.0 42,839 + EX31_RS13080 0.11 -0.1 42,840 - EX31_RS13080 0.11 -0.4 42,840 - EX31_RS13080 0.11 -0.2 42,840 - EX31_RS13080 0.11 -0.4 42,840 - EX31_RS13080 0.11 -0.9 42,840 - EX31_RS13080 0.11 -0.9 42,840 - EX31_RS13080 0.11 -0.4 42,840 - EX31_RS13080 0.11 -1.1 42,840 - EX31_RS13080 0.11 +0.0 42,840 - EX31_RS13080 0.11 -1.5 42,840 - EX31_RS13080 0.11 +2.8 42,840 - EX31_RS13080 0.11 -0.5 42,840 - EX31_RS13080 0.11 -0.7 42,840 - EX31_RS13080 0.11 +0.2 42,840 - EX31_RS13080 0.11 -0.1 42,840 - EX31_RS13080 0.11 -0.8 42,879 - EX31_RS13080 0.18 -0.5 43,078 + EX31_RS13080 0.54 +1.5 43,078 + EX31_RS13080 0.54 -0.1 43,079 - EX31_RS13080 0.54 +0.1 43,079 - EX31_RS13080 0.54 +0.3 43,079 - EX31_RS13080 0.54 -1.0 43,091 - EX31_RS13080 0.56 -0.1 43,119 + EX31_RS13080 0.61 -0.7 43,120 - EX31_RS13080 0.62 -0.8 43,137 + EX31_RS13080 0.65 -0.4 43,138 - EX31_RS13080 0.65 -0.1 43,177 - EX31_RS13080 0.72 +0.3 43,285 + -1.2 43,285 + +1.1 43,285 + -1.3 43,285 + +1.1 43,285 + +1.1 43,285 + +0.1 43,285 + +0.5 43,286 - +0.7 43,286 - -2.6 43,286 - -0.5 43,286 - +0.5 43,286 - -0.2 43,286 - +0.4 43,286 - +0.1 43,286 - +0.4 43,311 + +0.7 43,312 - -0.9 43,331 + -0.1 43,331 + +0.4 43,331 + +0.9 43,331 + -0.9 43,332 - -0.0 43,332 - -0.3 43,332 - +1.0 43,366 + +1.0 43,366 + +0.4 43,366 + -0.8 43,366 + +1.4 43,367 - +0.5 43,367 - -0.8 43,367 - -0.3 43,373 + +0.8 43,373 + +0.2 43,380 + -0.4 43,380 + -0.6 43,381 - -0.5 43,381 - -0.5 43,381 - -0.5 43,381 - -1.5 43,385 + -0.3 43,385 + +0.0 43,385 + -0.6 43,385 + +0.4 43,385 + -0.0 43,385 + -0.8 43,385 + +0.2 43,385 + +0.6 43,385 + +0.5 43,386 - +0.6 43,386 - -0.8 43,386 - -1.3 43,386 - +0.2 43,386 - +1.0 43,386 - -1.2 43,389 + +0.3 43,389 + +1.2 43,390 - -0.9 43,390 - +0.7 43,390 - -0.0 43,396 + -1.3 43,396 + +1.2 43,425 + +0.9 43,456 - -0.8 43,461 + +0.5 43,461 + -0.6 43,462 - +0.6 43,462 - -0.1 43,462 - -0.2 43,468 + -0.3 43,468 + -0.6 43,468 + -0.0 43,468 + -0.3 43,469 - -0.1 43,469 - +0.8 43,469 - +0.4 43,469 - +0.8 43,480 + +0.3 43,481 - -0.4 43,494 - EX31_RS13085 0.10 +0.7 43,538 + EX31_RS13085 0.15 -0.3 43,538 + EX31_RS13085 0.15 -0.2 43,538 + EX31_RS13085 0.15 -0.1 43,539 - EX31_RS13085 0.15 +0.2 43,539 - EX31_RS13085 0.15 -0.6 43,539 - EX31_RS13085 0.15 -0.7 43,539 - EX31_RS13085 0.15 -0.7 43,539 - EX31_RS13085 0.15 -0.9 43,539 - EX31_RS13085 0.15 +0.3 43,572 + EX31_RS13085 0.19 -0.6 43,572 + EX31_RS13085 0.19 -0.1 43,572 + EX31_RS13085 0.19 +0.0 43,573 - EX31_RS13085 0.20 -1.0 43,585 + EX31_RS13085 0.21 -0.3 43,586 - EX31_RS13085 0.21 +0.1 43,586 - EX31_RS13085 0.21 +0.6 43,586 - EX31_RS13085 0.21 -1.2 43,586 - EX31_RS13085 0.21 +0.5 43,694 - EX31_RS13085 0.34 +0.2 43,751 + EX31_RS13085 0.41 -0.2 43,752 - EX31_RS13085 0.41 +0.2 43,763 + EX31_RS13085 0.42 +0.2 43,763 + EX31_RS13085 0.42 -0.9 43,763 + EX31_RS13085 0.42 -0.4 43,763 + EX31_RS13085 0.42 +1.2 43,763 + EX31_RS13085 0.42 -0.5 43,763 + EX31_RS13085 0.42 +0.1 43,763 + EX31_RS13085 0.42 -1.4 43,763 + EX31_RS13085 0.42 -0.7 43,763 + EX31_RS13085 0.42 -0.3 43,763 + EX31_RS13085 0.42 +0.6 43,764 - EX31_RS13085 0.42 +0.2 43,764 - EX31_RS13085 0.42 -0.2 43,885 + EX31_RS13085 0.56 +0.0 43,885 + EX31_RS13085 0.56 -0.3 43,886 - EX31_RS13085 0.57 -0.4 43,917 + EX31_RS13085 0.60 +0.0 43,917 + EX31_RS13085 0.60 -0.4 43,918 - EX31_RS13085 0.60 -0.5 43,918 - EX31_RS13085 0.60 -1.0 43,918 - EX31_RS13085 0.60 -0.7 44,115 + EX31_RS13085 0.84 -0.5 44,167 + EX31_RS13085 0.90 -0.2 44,168 - EX31_RS13085 0.90 -0.7 44,169 + +0.8 44,170 - +0.3 44,170 - -0.8 44,251 + -1.2 44,252 - +0.3 44,252 - -0.4 44,281 - -0.7 44,301 - +1.1 44,326 + +0.7 44,349 + -0.4 44,381 + +0.3 44,382 - -0.7 44,429 + +1.1 44,429 + +1.3 44,435 + -0.1 44,435 + -0.2 44,435 + +1.3 44,435 + +0.9 44,436 - -0.0 44,436 - +0.6 44,436 - +0.2 44,436 - -1.3 44,436 - -1.3 44,436 - +0.5 44,446 + +0.6 44,495 + -0.4 44,514 + +0.5 44,550 - +0.5 44,550 - +0.3 44,610 - EX31_RS13090 0.14 +0.8 44,732 + EX31_RS13090 0.23 +1.2 44,787 - EX31_RS13090 0.27 -1.0 44,825 + EX31_RS13090 0.29 +0.2 44,826 - EX31_RS13090 0.29 -0.8 44,826 - EX31_RS13090 0.29 +0.3 44,830 + EX31_RS13090 0.30 -0.8 44,830 + EX31_RS13090 0.30 -0.3 44,830 + EX31_RS13090 0.30 +1.5 44,830 + EX31_RS13090 0.30 +0.5 44,830 + EX31_RS13090 0.30 -0.0 44,830 + EX31_RS13090 0.30 +0.2 44,831 - EX31_RS13090 0.30 +0.9 44,831 - EX31_RS13090 0.30 +0.6 44,831 - EX31_RS13090 0.30 -0.4 44,901 - EX31_RS13090 0.35 -0.9 44,901 - EX31_RS13090 0.35 +0.4 44,919 + EX31_RS13090 0.36 +1.0 44,919 + EX31_RS13090 0.36 +0.5 44,919 + EX31_RS13090 0.36 -0.2 44,919 + EX31_RS13090 0.36 -0.5 44,920 - EX31_RS13090 0.36 +0.2 44,920 - EX31_RS13090 0.36 +0.6 44,969 + EX31_RS13090 0.40 +0.3 44,969 + EX31_RS13090 0.40 -1.8 45,081 - EX31_RS13090 0.48 +0.3 45,099 - EX31_RS13090 0.49 -1.2 45,182 + EX31_RS13090 0.56 +0.4 45,182 + EX31_RS13090 0.56 +0.0 45,182 + EX31_RS13090 0.56 +0.5 45,183 - EX31_RS13090 0.56 +0.3 45,183 - EX31_RS13090 0.56 -0.9 45,183 - EX31_RS13090 0.56 -0.6 45,199 + EX31_RS13090 0.57 -0.4 45,199 + EX31_RS13090 0.57 +1.4 45,199 + EX31_RS13090 0.57 -0.3 45,199 + EX31_RS13090 0.57 -0.2 45,199 + EX31_RS13090 0.57 +0.3 45,200 - EX31_RS13090 0.57 +0.8 45,217 + EX31_RS13090 0.58 -0.0 45,217 + EX31_RS13090 0.58 +0.9 45,217 + EX31_RS13090 0.58 +0.3 45,218 - EX31_RS13090 0.58 +0.8 45,218 - EX31_RS13090 0.58 +0.4 45,218 - EX31_RS13090 0.58 +0.7 45,222 + EX31_RS13090 0.58 -0.3 45,222 + EX31_RS13090 0.58 +0.1 45,222 + EX31_RS13090 0.58 +0.8 45,223 - EX31_RS13090 0.59 -0.5 45,223 - EX31_RS13090 0.59 -1.1 45,223 - EX31_RS13090 0.59 -0.1 45,223 - EX31_RS13090 0.59 +1.0 45,223 - EX31_RS13090 0.59 +1.0
Or see this region's nucleotide sequence