Strain Fitness in Rahnella sp. WP5 around EX31_RS10660

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10655 and EX31_RS10660 are separated by 98 nucleotidesEX31_RS10660 and EX31_RS10665 are separated by 46 nucleotides EX31_RS10655: EX31_RS10655 - GNAT family N-acetyltransferase, at 46,677 to 49,061 _RS10655 EX31_RS10660: EX31_RS10660 - MFS transporter, at 49,160 to 50,380 _RS10660 EX31_RS10665: EX31_RS10665 - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 50,427 to 51,407 _RS10665 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1at 48.192 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.196 kb on - strand, within EX31_RS10655at 48.196 kb on - strand, within EX31_RS10655at 48.196 kb on - strand, within EX31_RS10655at 48.196 kb on - strand, within EX31_RS10655at 48.196 kb on - strand, within EX31_RS10655at 48.196 kb on - strand, within EX31_RS10655at 48.255 kb on + strand, within EX31_RS10655at 48.256 kb on - strand, within EX31_RS10655at 48.256 kb on - strand, within EX31_RS10655at 48.352 kb on - strand, within EX31_RS10655at 48.522 kb on + strand, within EX31_RS10655at 48.534 kb on + strand, within EX31_RS10655at 48.562 kb on - strand, within EX31_RS10655at 48.562 kb on - strand, within EX31_RS10655at 48.776 kb on - strand, within EX31_RS10655at 48.785 kb on + strand, within EX31_RS10655at 48.929 kb on + strandat 49.044 kb on + strandat 49.045 kb on - strandat 49.100 kb on + strandat 49.104 kb on - strandat 49.139 kb on - strandat 49.153 kb on + strandat 49.154 kb on - strandat 49.159 kb on + strandat 49.247 kb on + strandat 49.247 kb on + strandat 49.247 kb on + strandat 49.247 kb on + strandat 49.248 kb on - strandat 49.248 kb on - strandat 49.248 kb on - strandat 49.248 kb on - strandat 49.783 kb on - strand, within EX31_RS10660at 49.891 kb on - strand, within EX31_RS10660at 49.894 kb on - strand, within EX31_RS10660at 49.929 kb on - strand, within EX31_RS10660at 50.043 kb on + strand, within EX31_RS10660at 50.044 kb on - strand, within EX31_RS10660at 50.069 kb on + strand, within EX31_RS10660at 50.070 kb on - strand, within EX31_RS10660at 50.088 kb on + strand, within EX31_RS10660at 50.088 kb on + strand, within EX31_RS10660at 50.089 kb on - strand, within EX31_RS10660at 50.126 kb on + strand, within EX31_RS10660at 50.149 kb on - strand, within EX31_RS10660at 50.195 kb on - strand, within EX31_RS10660at 50.228 kb on - strand, within EX31_RS10660at 50.253 kb on + strand, within EX31_RS10660at 50.254 kb on - strand, within EX31_RS10660at 50.254 kb on - strand, within EX31_RS10660at 50.273 kb on + strandat 50.274 kb on - strandat 50.299 kb on + strandat 50.513 kb on - strandat 50.513 kb on - strandat 50.618 kb on - strand, within EX31_RS10665at 50.648 kb on - strand, within EX31_RS10665at 50.648 kb on - strand, within EX31_RS10665at 50.723 kb on - strand, within EX31_RS10665at 50.723 kb on - strand, within EX31_RS10665at 50.723 kb on - strand, within EX31_RS10665at 50.723 kb on - strand, within EX31_RS10665at 50.838 kb on - strand, within EX31_RS10665at 50.888 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.185 kb on - strand, within EX31_RS10665at 51.185 kb on - strand, within EX31_RS10665at 51.259 kb on - strand, within EX31_RS10665at 51.259 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.287 kb on - strand, within EX31_RS10665at 51.344 kb on - strandat 51.344 kb on - strandat 51.344 kb on - strandat 51.344 kb on - strandat 51.344 kb on - strandat 51.369 kb on - strandat 51.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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48,192 + EX31_RS10655 0.64 +0.5
48,195 + EX31_RS10655 0.64 -0.8
48,195 + EX31_RS10655 0.64 -1.5
48,195 + EX31_RS10655 0.64 +0.1
48,195 + EX31_RS10655 0.64 -0.8
48,195 + EX31_RS10655 0.64 +0.7
48,195 + EX31_RS10655 0.64 +0.6
48,195 + EX31_RS10655 0.64 -0.6
48,195 + EX31_RS10655 0.64 +1.2
48,195 + EX31_RS10655 0.64 -0.1
48,196 - EX31_RS10655 0.64 -0.6
48,196 - EX31_RS10655 0.64 +0.9
48,196 - EX31_RS10655 0.64 +0.2
48,196 - EX31_RS10655 0.64 +1.0
48,196 - EX31_RS10655 0.64 +1.2
48,196 - EX31_RS10655 0.64 +0.8
48,255 + EX31_RS10655 0.66 +0.3
48,256 - EX31_RS10655 0.66 -0.8
48,256 - EX31_RS10655 0.66 +0.4
48,352 - EX31_RS10655 0.70 -0.5
48,522 + EX31_RS10655 0.77 +0.5
48,534 + EX31_RS10655 0.78 -1.7
48,562 - EX31_RS10655 0.79 -0.8
48,562 - EX31_RS10655 0.79 -0.7
48,776 - EX31_RS10655 0.88 +0.1
48,785 + EX31_RS10655 0.88 -0.4
48,929 + -0.3
49,044 + -0.0
49,045 - -0.5
49,100 + +0.3
49,104 - -0.2
49,139 - +1.4
49,153 + -0.3
49,154 - -1.1
49,159 + -0.5
49,247 + -0.7
49,247 + +0.2
49,247 + -0.3
49,247 + -1.8
49,248 - -1.5
49,248 - -0.3
49,248 - +0.1
49,248 - +0.6
49,783 - EX31_RS10660 0.51 +0.1
49,891 - EX31_RS10660 0.60 +0.2
49,894 - EX31_RS10660 0.60 -0.2
49,929 - EX31_RS10660 0.63 -1.8
50,043 + EX31_RS10660 0.72 -0.1
50,044 - EX31_RS10660 0.72 +0.9
50,069 + EX31_RS10660 0.74 +0.1
50,070 - EX31_RS10660 0.75 -0.1
50,088 + EX31_RS10660 0.76 -0.9
50,088 + EX31_RS10660 0.76 +0.2
50,089 - EX31_RS10660 0.76 -0.1
50,126 + EX31_RS10660 0.79 +1.0
50,149 - EX31_RS10660 0.81 +1.1
50,195 - EX31_RS10660 0.85 +0.4
50,228 - EX31_RS10660 0.87 +0.9
50,253 + EX31_RS10660 0.90 -0.1
50,254 - EX31_RS10660 0.90 +0.9
50,254 - EX31_RS10660 0.90 -2.1
50,273 + +0.8
50,274 - -0.9
50,299 + +0.9
50,513 - +0.3
50,513 - +0.4
50,618 - EX31_RS10665 0.19 -0.6
50,648 - EX31_RS10665 0.23 -0.8
50,648 - EX31_RS10665 0.23 -1.0
50,723 - EX31_RS10665 0.30 -0.7
50,723 - EX31_RS10665 0.30 +0.8
50,723 - EX31_RS10665 0.30 +0.5
50,723 - EX31_RS10665 0.30 +0.1
50,838 - EX31_RS10665 0.42 -1.9
50,888 - EX31_RS10665 0.47 -0.8
51,147 - EX31_RS10665 0.73 -0.6
51,147 - EX31_RS10665 0.73 -0.1
51,147 - EX31_RS10665 0.73 -1.7
51,147 - EX31_RS10665 0.73 -2.0
51,147 - EX31_RS10665 0.73 -0.6
51,185 - EX31_RS10665 0.77 -0.8
51,185 - EX31_RS10665 0.77 -1.4
51,259 - EX31_RS10665 0.85 +0.4
51,259 - EX31_RS10665 0.85 -1.1
51,261 - EX31_RS10665 0.85 -0.5
51,261 - EX31_RS10665 0.85 -0.5
51,261 - EX31_RS10665 0.85 -1.3
51,261 - EX31_RS10665 0.85 -0.3
51,261 - EX31_RS10665 0.85 -0.4
51,287 - EX31_RS10665 0.88 +0.4
51,344 - +1.4
51,344 - -0.6
51,344 - +0.0
51,344 - -0.3
51,344 - -0.4
51,369 - -1.0
51,376 - -0.5

Or see this region's nucleotide sequence