Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09750 and EX31_RS09755 overlap by 8 nucleotides EX31_RS09755 and EX31_RS09760 are separated by 101 nucleotides
EX31_RS09750: EX31_RS09750 - sugar ABC transporter permease, at 154,008 to 155,207
_RS09750
EX31_RS09755: EX31_RS09755 - xylose ABC transporter ATP-binding protein, at 155,200 to 156,705
_RS09755
EX31_RS09760: EX31_RS09760 - D-xylose ABC transporter substrate-binding protein, at 156,807 to 157,799
_RS09760
Position (kb) 155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 154.380 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.385 kb on - strand, within EX31_RS09750 at 154.388 kb on + strand, within EX31_RS09750 at 154.492 kb on + strand, within EX31_RS09750 at 154.638 kb on - strand, within EX31_RS09750 at 154.663 kb on + strand, within EX31_RS09750 at 154.664 kb on - strand, within EX31_RS09750 at 154.664 kb on - strand, within EX31_RS09750 at 154.664 kb on - strand, within EX31_RS09750 at 154.675 kb on - strand, within EX31_RS09750 at 154.675 kb on - strand, within EX31_RS09750 at 154.675 kb on - strand, within EX31_RS09750 at 154.675 kb on - strand, within EX31_RS09750 at 154.793 kb on - strand, within EX31_RS09750 at 154.834 kb on - strand, within EX31_RS09750 at 154.912 kb on - strand, within EX31_RS09750 at 155.024 kb on + strand, within EX31_RS09750 at 155.024 kb on + strand, within EX31_RS09750 at 155.024 kb on + strand, within EX31_RS09750 at 155.025 kb on - strand, within EX31_RS09750 at 155.038 kb on + strand, within EX31_RS09750 at 155.038 kb on + strand, within EX31_RS09750 at 155.038 kb on + strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.039 kb on - strand, within EX31_RS09750 at 155.072 kb on + strand, within EX31_RS09750 at 155.072 kb on + strand, within EX31_RS09750 at 155.118 kb on - strand at 155.207 kb on + strand at 155.207 kb on + strand at 155.207 kb on + strand at 155.207 kb on + strand at 155.208 kb on - strand at 155.208 kb on - strand at 155.208 kb on - strand at 155.208 kb on - strand at 155.208 kb on - strand at 155.251 kb on + strand at 155.257 kb on - strand at 155.353 kb on - strand, within EX31_RS09755 at 155.353 kb on - strand, within EX31_RS09755 at 155.353 kb on - strand, within EX31_RS09755 at 155.461 kb on + strand, within EX31_RS09755 at 155.640 kb on + strand, within EX31_RS09755 at 155.641 kb on - strand, within EX31_RS09755 at 155.641 kb on - strand, within EX31_RS09755 at 155.905 kb on - strand, within EX31_RS09755 at 155.947 kb on + strand, within EX31_RS09755 at 155.948 kb on - strand, within EX31_RS09755 at 155.950 kb on + strand, within EX31_RS09755 at 155.950 kb on + strand, within EX31_RS09755 at 155.950 kb on + strand, within EX31_RS09755 at 155.951 kb on - strand, within EX31_RS09755 at 155.951 kb on - strand, within EX31_RS09755 at 156.135 kb on - strand, within EX31_RS09755 at 156.135 kb on - strand, within EX31_RS09755 at 156.135 kb on - strand, within EX31_RS09755 at 156.139 kb on - strand, within EX31_RS09755 at 156.325 kb on - strand, within EX31_RS09755 at 156.597 kb on + strand at 156.654 kb on + strand at 156.657 kb on + strand at 156.658 kb on - strand at 156.658 kb on - strand at 156.658 kb on - strand at 156.892 kb on + strand at 156.893 kb on - strand at 157.041 kb on - strand, within EX31_RS09760 at 157.120 kb on - strand, within EX31_RS09760 at 157.354 kb on + strand, within EX31_RS09760 at 157.354 kb on + strand, within EX31_RS09760 at 157.354 kb on + strand, within EX31_RS09760 at 157.430 kb on - strand, within EX31_RS09760 at 157.430 kb on - strand, within EX31_RS09760 at 157.466 kb on - strand, within EX31_RS09760 at 157.531 kb on + strand, within EX31_RS09760 at 157.571 kb on + strand, within EX31_RS09760
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 154,380 - EX31_RS09750 0.31 +0.2 154,385 - EX31_RS09750 0.31 -0.3 154,385 - EX31_RS09750 0.31 +0.4 154,385 - EX31_RS09750 0.31 -0.0 154,385 - EX31_RS09750 0.31 -0.6 154,385 - EX31_RS09750 0.31 -0.7 154,388 + EX31_RS09750 0.32 +0.6 154,492 + EX31_RS09750 0.40 +0.5 154,638 - EX31_RS09750 0.53 +0.8 154,663 + EX31_RS09750 0.55 -0.4 154,664 - EX31_RS09750 0.55 -1.6 154,664 - EX31_RS09750 0.55 -0.1 154,664 - EX31_RS09750 0.55 -0.6 154,675 - EX31_RS09750 0.56 +1.4 154,675 - EX31_RS09750 0.56 -0.1 154,675 - EX31_RS09750 0.56 -0.1 154,675 - EX31_RS09750 0.56 +1.8 154,793 - EX31_RS09750 0.65 -0.9 154,834 - EX31_RS09750 0.69 -0.2 154,912 - EX31_RS09750 0.75 -0.9 155,024 + EX31_RS09750 0.85 -0.4 155,024 + EX31_RS09750 0.85 +0.1 155,024 + EX31_RS09750 0.85 +0.4 155,025 - EX31_RS09750 0.85 -0.9 155,038 + EX31_RS09750 0.86 -0.4 155,038 + EX31_RS09750 0.86 -2.0 155,038 + EX31_RS09750 0.86 +0.5 155,039 - EX31_RS09750 0.86 -0.0 155,039 - EX31_RS09750 0.86 -0.4 155,039 - EX31_RS09750 0.86 +0.1 155,039 - EX31_RS09750 0.86 +0.5 155,039 - EX31_RS09750 0.86 +1.2 155,039 - EX31_RS09750 0.86 -0.1 155,039 - EX31_RS09750 0.86 -0.4 155,072 + EX31_RS09750 0.89 -0.5 155,072 + EX31_RS09750 0.89 +0.9 155,118 - -2.3 155,207 + -1.4 155,207 + +0.4 155,207 + -1.6 155,207 + -0.3 155,208 - +0.4 155,208 - +0.6 155,208 - -0.8 155,208 - -0.2 155,208 - +1.1 155,251 + -0.9 155,257 - +0.0 155,353 - EX31_RS09755 0.10 +0.6 155,353 - EX31_RS09755 0.10 +0.5 155,353 - EX31_RS09755 0.10 -0.4 155,461 + EX31_RS09755 0.17 -0.1 155,640 + EX31_RS09755 0.29 -0.7 155,641 - EX31_RS09755 0.29 -1.0 155,641 - EX31_RS09755 0.29 -0.6 155,905 - EX31_RS09755 0.47 -0.5 155,947 + EX31_RS09755 0.50 +0.6 155,948 - EX31_RS09755 0.50 -0.5 155,950 + EX31_RS09755 0.50 +1.9 155,950 + EX31_RS09755 0.50 -0.3 155,950 + EX31_RS09755 0.50 -0.4 155,951 - EX31_RS09755 0.50 +1.6 155,951 - EX31_RS09755 0.50 +0.3 156,135 - EX31_RS09755 0.62 +1.4 156,135 - EX31_RS09755 0.62 +0.3 156,135 - EX31_RS09755 0.62 -0.6 156,139 - EX31_RS09755 0.62 +0.7 156,325 - EX31_RS09755 0.75 +1.7 156,597 + +0.7 156,654 + -0.2 156,657 + +0.2 156,658 - +0.6 156,658 - +0.7 156,658 - -0.6 156,892 + -2.9 156,893 - +1.2 157,041 - EX31_RS09760 0.24 -0.7 157,120 - EX31_RS09760 0.32 -2.2 157,354 + EX31_RS09760 0.55 -0.6 157,354 + EX31_RS09760 0.55 +0.1 157,354 + EX31_RS09760 0.55 -0.1 157,430 - EX31_RS09760 0.63 -0.4 157,430 - EX31_RS09760 0.63 +1.4 157,466 - EX31_RS09760 0.66 +1.4 157,531 + EX31_RS09760 0.73 +0.6 157,571 + EX31_RS09760 0.77 -0.1
Or see this region's nucleotide sequence