Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08255 and EX31_RS08260 are separated by 112 nucleotides EX31_RS08260 and EX31_RS08265 are separated by 63 nucleotides EX31_RS08265 and EX31_RS08270 are separated by 70 nucleotides EX31_RS08270 and EX31_RS08275 are separated by 51 nucleotides
EX31_RS08255: EX31_RS08255 - NADP-specific glutamate dehydrogenase, at 145,381 to 146,724
_RS08255
EX31_RS08260: EX31_RS08260 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 146,837 to 147,322
_RS08260
EX31_RS08265: EX31_RS08265 - phosphatase PAP2 family protein, at 147,386 to 148,084
_RS08265
EX31_RS08270: EX31_RS08270 - DUF2000 domain-containing protein, at 148,155 to 148,592
_RS08270
EX31_RS08275: EX31_RS08275 - AraC family transcriptional regulator, at 148,644 to 149,483
_RS08275
Position (kb) 147
148
149 Strain fitness (log2 ratio) -2
-1
0
1
2 at 146.479 kb on + strand, within EX31_RS08255 at 146.480 kb on - strand, within EX31_RS08255 at 146.480 kb on - strand, within EX31_RS08255 at 146.621 kb on - strand at 146.621 kb on - strand at 146.631 kb on + strand at 146.631 kb on + strand at 146.631 kb on + strand at 146.631 kb on + strand at 146.631 kb on + strand at 146.632 kb on - strand at 146.641 kb on + strand at 146.642 kb on - strand at 146.642 kb on - strand at 146.642 kb on - strand at 146.692 kb on + strand at 146.726 kb on - strand at 146.730 kb on + strand at 146.730 kb on + strand at 146.730 kb on + strand at 146.731 kb on - strand at 146.731 kb on - strand at 146.744 kb on + strand at 146.744 kb on + strand at 146.745 kb on - strand at 146.745 kb on - strand at 146.745 kb on - strand at 146.745 kb on - strand at 146.745 kb on - strand at 146.763 kb on + strand at 146.767 kb on + strand at 146.768 kb on - strand at 146.785 kb on + strand at 146.785 kb on + strand at 146.785 kb on + strand at 146.785 kb on + strand at 146.785 kb on + strand at 146.786 kb on - strand at 146.786 kb on - strand at 146.786 kb on - strand at 146.786 kb on - strand at 146.786 kb on - strand at 146.819 kb on + strand at 146.820 kb on - strand at 146.820 kb on - strand at 146.820 kb on - strand at 147.028 kb on - strand, within EX31_RS08260 at 147.141 kb on + strand, within EX31_RS08260 at 147.142 kb on - strand, within EX31_RS08260 at 147.199 kb on + strand, within EX31_RS08260 at 147.387 kb on + strand at 147.530 kb on + strand, within EX31_RS08265 at 147.530 kb on + strand, within EX31_RS08265 at 147.530 kb on + strand, within EX31_RS08265 at 147.531 kb on - strand, within EX31_RS08265 at 147.549 kb on + strand, within EX31_RS08265 at 147.629 kb on - strand, within EX31_RS08265 at 147.631 kb on + strand, within EX31_RS08265 at 147.631 kb on + strand, within EX31_RS08265 at 147.631 kb on + strand, within EX31_RS08265 at 147.631 kb on + strand, within EX31_RS08265 at 147.632 kb on - strand, within EX31_RS08265 at 147.632 kb on - strand, within EX31_RS08265 at 147.632 kb on - strand, within EX31_RS08265 at 147.632 kb on - strand, within EX31_RS08265 at 147.632 kb on - strand, within EX31_RS08265 at 147.632 kb on - strand, within EX31_RS08265 at 147.700 kb on + strand, within EX31_RS08265 at 147.700 kb on + strand, within EX31_RS08265 at 147.700 kb on + strand, within EX31_RS08265 at 147.700 kb on + strand, within EX31_RS08265 at 147.700 kb on + strand, within EX31_RS08265 at 147.700 kb on + strand, within EX31_RS08265 at 147.700 kb on + strand, within EX31_RS08265 at 147.700 kb on + strand, within EX31_RS08265 at 147.700 kb on + strand, within EX31_RS08265 at 147.701 kb on - strand, within EX31_RS08265 at 147.701 kb on - strand, within EX31_RS08265 at 147.701 kb on - strand, within EX31_RS08265 at 147.701 kb on - strand, within EX31_RS08265 at 147.701 kb on - strand, within EX31_RS08265 at 147.701 kb on - strand, within EX31_RS08265 at 147.701 kb on - strand, within EX31_RS08265 at 147.701 kb on - strand, within EX31_RS08265 at 147.701 kb on - strand, within EX31_RS08265 at 147.701 kb on - strand, within EX31_RS08265 at 147.702 kb on + strand, within EX31_RS08265 at 147.702 kb on + strand, within EX31_RS08265 at 147.702 kb on + strand, within EX31_RS08265 at 147.702 kb on + strand, within EX31_RS08265 at 147.702 kb on + strand, within EX31_RS08265 at 147.702 kb on + strand, within EX31_RS08265 at 147.702 kb on + strand, within EX31_RS08265 at 147.702 kb on + strand, within EX31_RS08265 at 147.702 kb on + strand, within EX31_RS08265 at 147.702 kb on + strand, within EX31_RS08265 at 147.703 kb on - strand, within EX31_RS08265 at 147.703 kb on - strand, within EX31_RS08265 at 147.703 kb on - strand, within EX31_RS08265 at 147.703 kb on - strand, within EX31_RS08265 at 147.703 kb on - strand, within EX31_RS08265 at 147.703 kb on - strand, within EX31_RS08265 at 147.703 kb on - strand, within EX31_RS08265 at 147.703 kb on - strand, within EX31_RS08265 at 147.703 kb on - strand, within EX31_RS08265 at 147.703 kb on - strand, within EX31_RS08265 at 147.703 kb on - strand, within EX31_RS08265 at 147.703 kb on - strand, within EX31_RS08265 at 147.766 kb on + strand, within EX31_RS08265 at 147.766 kb on + strand, within EX31_RS08265 at 147.767 kb on - strand, within EX31_RS08265 at 147.767 kb on - strand, within EX31_RS08265 at 147.969 kb on + strand, within EX31_RS08265 at 147.969 kb on + strand, within EX31_RS08265 at 147.970 kb on - strand, within EX31_RS08265 at 147.970 kb on - strand, within EX31_RS08265 at 148.000 kb on + strand, within EX31_RS08265 at 148.078 kb on + strand at 148.078 kb on + strand at 148.078 kb on + strand at 148.079 kb on - strand at 148.079 kb on - strand at 148.099 kb on + strand at 148.100 kb on - strand at 148.100 kb on - strand at 148.102 kb on + strand at 148.102 kb on + strand at 148.102 kb on + strand at 148.103 kb on - strand at 148.122 kb on + strand at 148.122 kb on + strand at 148.142 kb on + strand at 148.142 kb on + strand at 148.280 kb on - strand, within EX31_RS08270 at 148.280 kb on - strand, within EX31_RS08270 at 148.338 kb on - strand, within EX31_RS08270 at 148.338 kb on - strand, within EX31_RS08270 at 148.578 kb on + strand at 148.578 kb on + strand at 148.578 kb on + strand at 148.586 kb on + strand at 148.586 kb on + strand at 148.586 kb on + strand at 148.627 kb on + strand at 148.628 kb on - strand at 148.675 kb on + strand at 148.696 kb on + strand at 148.744 kb on - strand, within EX31_RS08275 at 148.744 kb on - strand, within EX31_RS08275 at 148.817 kb on + strand, within EX31_RS08275 at 148.817 kb on + strand, within EX31_RS08275 at 148.817 kb on + strand, within EX31_RS08275 at 148.818 kb on - strand, within EX31_RS08275 at 148.818 kb on - strand, within EX31_RS08275 at 148.822 kb on + strand, within EX31_RS08275 at 148.822 kb on + strand, within EX31_RS08275 at 148.823 kb on - strand, within EX31_RS08275 at 148.823 kb on - strand, within EX31_RS08275 at 148.823 kb on - strand, within EX31_RS08275 at 148.823 kb on - strand, within EX31_RS08275 at 148.854 kb on - strand, within EX31_RS08275 at 148.942 kb on + strand, within EX31_RS08275 at 148.942 kb on + strand, within EX31_RS08275 at 148.943 kb on - strand, within EX31_RS08275
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 146,479 + EX31_RS08255 0.82 -0.0 146,480 - EX31_RS08255 0.82 +0.6 146,480 - EX31_RS08255 0.82 +1.5 146,621 - -0.4 146,621 - -0.0 146,631 + -1.3 146,631 + -0.9 146,631 + +0.0 146,631 + -0.6 146,631 + +0.8 146,632 - +1.2 146,641 + +0.1 146,642 - -0.6 146,642 - +0.7 146,642 - +0.4 146,692 + +0.2 146,726 - +1.2 146,730 + -1.2 146,730 + +0.2 146,730 + +0.6 146,731 - -1.2 146,731 - -0.4 146,744 + +0.8 146,744 + +1.1 146,745 - -0.0 146,745 - -0.2 146,745 - +0.7 146,745 - +0.0 146,745 - +0.1 146,763 + -0.3 146,767 + +0.6 146,768 - -0.3 146,785 + +0.0 146,785 + -0.1 146,785 + -0.4 146,785 + +0.2 146,785 + +1.3 146,786 - -0.4 146,786 - -1.0 146,786 - +1.2 146,786 - +1.0 146,786 - +0.9 146,819 + -0.5 146,820 - +0.5 146,820 - +0.0 146,820 - -0.7 147,028 - EX31_RS08260 0.39 -0.2 147,141 + EX31_RS08260 0.63 -0.2 147,142 - EX31_RS08260 0.63 -0.1 147,199 + EX31_RS08260 0.74 -0.3 147,387 + -0.1 147,530 + EX31_RS08265 0.21 -0.4 147,530 + EX31_RS08265 0.21 +0.5 147,530 + EX31_RS08265 0.21 -0.5 147,531 - EX31_RS08265 0.21 +1.3 147,549 + EX31_RS08265 0.23 -0.7 147,629 - EX31_RS08265 0.35 +0.4 147,631 + EX31_RS08265 0.35 -0.4 147,631 + EX31_RS08265 0.35 -1.0 147,631 + EX31_RS08265 0.35 -0.0 147,631 + EX31_RS08265 0.35 +0.9 147,632 - EX31_RS08265 0.35 -0.4 147,632 - EX31_RS08265 0.35 +0.2 147,632 - EX31_RS08265 0.35 +1.6 147,632 - EX31_RS08265 0.35 +0.6 147,632 - EX31_RS08265 0.35 -0.5 147,632 - EX31_RS08265 0.35 +0.5 147,700 + EX31_RS08265 0.45 +1.3 147,700 + EX31_RS08265 0.45 -0.1 147,700 + EX31_RS08265 0.45 +0.9 147,700 + EX31_RS08265 0.45 +0.1 147,700 + EX31_RS08265 0.45 -0.7 147,700 + EX31_RS08265 0.45 -0.8 147,700 + EX31_RS08265 0.45 +0.5 147,700 + EX31_RS08265 0.45 -0.8 147,700 + EX31_RS08265 0.45 -0.5 147,701 - EX31_RS08265 0.45 +0.4 147,701 - EX31_RS08265 0.45 -1.6 147,701 - EX31_RS08265 0.45 +0.5 147,701 - EX31_RS08265 0.45 -0.3 147,701 - EX31_RS08265 0.45 +0.5 147,701 - EX31_RS08265 0.45 -0.1 147,701 - EX31_RS08265 0.45 -1.6 147,701 - EX31_RS08265 0.45 -0.2 147,701 - EX31_RS08265 0.45 -0.2 147,701 - EX31_RS08265 0.45 -0.9 147,702 + EX31_RS08265 0.45 -0.3 147,702 + EX31_RS08265 0.45 -0.8 147,702 + EX31_RS08265 0.45 -0.5 147,702 + EX31_RS08265 0.45 -1.1 147,702 + EX31_RS08265 0.45 -1.1 147,702 + EX31_RS08265 0.45 -1.0 147,702 + EX31_RS08265 0.45 -0.2 147,702 + EX31_RS08265 0.45 +0.4 147,702 + EX31_RS08265 0.45 -1.3 147,702 + EX31_RS08265 0.45 +0.8 147,703 - EX31_RS08265 0.45 -0.1 147,703 - EX31_RS08265 0.45 -0.5 147,703 - EX31_RS08265 0.45 -1.9 147,703 - EX31_RS08265 0.45 -1.6 147,703 - EX31_RS08265 0.45 -0.8 147,703 - EX31_RS08265 0.45 +0.0 147,703 - EX31_RS08265 0.45 +0.3 147,703 - EX31_RS08265 0.45 -0.4 147,703 - EX31_RS08265 0.45 -0.5 147,703 - EX31_RS08265 0.45 -0.5 147,703 - EX31_RS08265 0.45 -0.9 147,703 - EX31_RS08265 0.45 -1.1 147,766 + EX31_RS08265 0.54 +1.4 147,766 + EX31_RS08265 0.54 +1.8 147,767 - EX31_RS08265 0.55 -0.4 147,767 - EX31_RS08265 0.55 +0.2 147,969 + EX31_RS08265 0.83 -0.1 147,969 + EX31_RS08265 0.83 +0.1 147,970 - EX31_RS08265 0.84 -0.8 147,970 - EX31_RS08265 0.84 -0.4 148,000 + EX31_RS08265 0.88 -0.2 148,078 + +0.1 148,078 + +2.0 148,078 + -0.2 148,079 - +0.8 148,079 - +0.2 148,099 + +0.2 148,100 - +1.2 148,100 - -0.5 148,102 + -0.2 148,102 + +0.3 148,102 + -2.4 148,103 - +0.1 148,122 + +0.9 148,122 + +1.0 148,142 + -0.5 148,142 + +0.8 148,280 - EX31_RS08270 0.29 +1.5 148,280 - EX31_RS08270 0.29 -0.1 148,338 - EX31_RS08270 0.42 -0.9 148,338 - EX31_RS08270 0.42 +1.2 148,578 + +1.1 148,578 + +0.5 148,578 + -1.4 148,586 + -0.3 148,586 + -0.9 148,586 + -0.6 148,627 + -0.5 148,628 - -0.2 148,675 + +1.0 148,696 + -0.6 148,744 - EX31_RS08275 0.12 -0.5 148,744 - EX31_RS08275 0.12 +0.3 148,817 + EX31_RS08275 0.21 -0.5 148,817 + EX31_RS08275 0.21 -0.4 148,817 + EX31_RS08275 0.21 +0.5 148,818 - EX31_RS08275 0.21 +1.0 148,818 - EX31_RS08275 0.21 +0.4 148,822 + EX31_RS08275 0.21 -0.6 148,822 + EX31_RS08275 0.21 -0.7 148,823 - EX31_RS08275 0.21 +0.2 148,823 - EX31_RS08275 0.21 -0.5 148,823 - EX31_RS08275 0.21 -0.5 148,823 - EX31_RS08275 0.21 +0.9 148,854 - EX31_RS08275 0.25 +0.5 148,942 + EX31_RS08275 0.35 +0.4 148,942 + EX31_RS08275 0.35 -0.2 148,943 - EX31_RS08275 0.36 -0.2
Or see this region's nucleotide sequence