Strain Fitness in Rahnella sp. WP5 around EX31_RS05270

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS05260 and EX31_RS05265 are separated by 69 nucleotidesEX31_RS05265 and EX31_RS05270 are separated by 221 nucleotidesEX31_RS05270 and EX31_RS05275 are separated by 163 nucleotides EX31_RS05260: EX31_RS05260 - 4-oxalocrotonate tautomerase, at 189,503 to 189,685 _RS05260 EX31_RS05265: EX31_RS05265 - peptide-methionine (S)-S-oxide reductase MsrA, at 189,755 to 190,297 _RS05265 EX31_RS05270: EX31_RS05270 - carbonic anhydrase, at 190,519 to 191,154 _RS05270 EX31_RS05275: EX31_RS05275 - N-acetyltransferase, at 191,318 to 192,445 _RS05275 Position (kb) 190 191 192Strain fitness (log2 ratio) -2 -1 0 1 2at 189.604 kb on + strand, within EX31_RS05260at 189.624 kb on + strand, within EX31_RS05260at 189.624 kb on + strand, within EX31_RS05260at 189.624 kb on + strand, within EX31_RS05260at 189.624 kb on + strand, within EX31_RS05260at 189.624 kb on + strand, within EX31_RS05260at 189.624 kb on + strand, within EX31_RS05260at 189.624 kb on + strand, within EX31_RS05260at 189.624 kb on + strand, within EX31_RS05260at 189.624 kb on + strand, within EX31_RS05260at 189.625 kb on - strand, within EX31_RS05260at 189.625 kb on - strand, within EX31_RS05260at 189.625 kb on - strand, within EX31_RS05260at 189.625 kb on - strand, within EX31_RS05260at 189.625 kb on - strand, within EX31_RS05260at 189.625 kb on - strand, within EX31_RS05260at 189.625 kb on - strand, within EX31_RS05260at 189.625 kb on - strand, within EX31_RS05260at 189.721 kb on + strandat 189.721 kb on + strandat 189.721 kb on + strandat 189.722 kb on - strandat 189.722 kb on - strandat 189.745 kb on - strandat 189.757 kb on - strandat 189.765 kb on - strandat 189.834 kb on + strand, within EX31_RS05265at 189.835 kb on - strand, within EX31_RS05265at 189.864 kb on + strand, within EX31_RS05265at 189.864 kb on + strand, within EX31_RS05265at 189.865 kb on - strand, within EX31_RS05265at 189.865 kb on - strand, within EX31_RS05265at 189.865 kb on - strand, within EX31_RS05265at 189.877 kb on - strand, within EX31_RS05265at 189.891 kb on + strand, within EX31_RS05265at 189.891 kb on + strand, within EX31_RS05265at 189.891 kb on + strand, within EX31_RS05265at 189.891 kb on + strand, within EX31_RS05265at 189.891 kb on + strand, within EX31_RS05265at 189.891 kb on + strand, within EX31_RS05265at 189.891 kb on + strand, within EX31_RS05265at 189.891 kb on + strand, within EX31_RS05265at 189.891 kb on + strand, within EX31_RS05265at 189.891 kb on + strand, within EX31_RS05265at 189.891 kb on + strand, within EX31_RS05265at 189.891 kb on + strand, within EX31_RS05265at 189.891 kb on + strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.892 kb on - strand, within EX31_RS05265at 189.957 kb on - strand, within EX31_RS05265at 189.957 kb on - strand, within EX31_RS05265at 190.015 kb on - strand, within EX31_RS05265at 190.096 kb on - strand, within EX31_RS05265at 190.096 kb on - strand, within EX31_RS05265at 190.170 kb on + strand, within EX31_RS05265at 190.171 kb on - strand, within EX31_RS05265at 190.171 kb on - strand, within EX31_RS05265at 190.171 kb on - strand, within EX31_RS05265at 190.200 kb on + strand, within EX31_RS05265at 190.201 kb on - strand, within EX31_RS05265at 190.201 kb on - strand, within EX31_RS05265at 190.252 kb on + strandat 190.252 kb on + strandat 190.252 kb on + strandat 190.253 kb on - strandat 190.279 kb on + strandat 190.284 kb on + strandat 190.284 kb on + strandat 190.285 kb on - strandat 190.297 kb on + strandat 190.297 kb on + strandat 190.298 kb on - strandat 190.298 kb on - strandat 190.329 kb on + strandat 190.330 kb on - strandat 190.341 kb on + strandat 190.352 kb on + strandat 190.353 kb on - strandat 190.353 kb on - strandat 190.353 kb on - strandat 190.358 kb on + strandat 190.358 kb on + strandat 190.359 kb on - strandat 190.359 kb on - strandat 190.400 kb on - strandat 190.407 kb on - strandat 190.407 kb on - strandat 190.409 kb on + strandat 190.409 kb on + strandat 190.409 kb on + strandat 190.410 kb on - strandat 190.410 kb on - strandat 190.410 kb on - strandat 190.424 kb on + strandat 190.424 kb on + strandat 190.425 kb on - strandat 190.435 kb on - strandat 190.438 kb on + strandat 190.438 kb on + strandat 190.439 kb on - strandat 190.447 kb on + strandat 190.448 kb on - strandat 190.448 kb on - strandat 190.502 kb on + strandat 190.502 kb on + strandat 190.503 kb on - strandat 190.578 kb on + strandat 190.578 kb on + strandat 190.579 kb on - strandat 190.626 kb on + strand, within EX31_RS05270at 190.626 kb on + strand, within EX31_RS05270at 190.627 kb on - strand, within EX31_RS05270at 190.661 kb on + strand, within EX31_RS05270at 190.713 kb on + strand, within EX31_RS05270at 190.713 kb on + strand, within EX31_RS05270at 190.714 kb on - strand, within EX31_RS05270at 190.795 kb on - strand, within EX31_RS05270at 191.043 kb on + strand, within EX31_RS05270at 191.044 kb on - strand, within EX31_RS05270at 191.062 kb on + strand, within EX31_RS05270at 191.062 kb on + strand, within EX31_RS05270at 191.062 kb on + strand, within EX31_RS05270at 191.062 kb on + strand, within EX31_RS05270at 191.062 kb on + strand, within EX31_RS05270at 191.067 kb on + strand, within EX31_RS05270at 191.141 kb on + strandat 191.152 kb on + strandat 191.152 kb on + strandat 191.163 kb on + strandat 191.163 kb on + strandat 191.164 kb on - strandat 191.167 kb on + strandat 191.188 kb on - strandat 191.219 kb on + strandat 191.226 kb on + strandat 191.226 kb on + strandat 191.226 kb on + strandat 191.227 kb on - strandat 191.227 kb on - strandat 191.229 kb on + strandat 191.229 kb on + strandat 191.229 kb on + strandat 191.229 kb on + strandat 191.229 kb on + strandat 191.229 kb on + strandat 191.229 kb on + strandat 191.230 kb on - strandat 191.230 kb on - strandat 191.230 kb on - strandat 191.230 kb on - strandat 191.231 kb on + strandat 191.231 kb on + strandat 191.231 kb on + strandat 191.232 kb on - strandat 191.232 kb on - strandat 191.232 kb on - strandat 191.237 kb on + strandat 191.238 kb on - strandat 191.280 kb on + strandat 191.296 kb on + strandat 191.335 kb on - strandat 191.405 kb on + strandat 191.405 kb on + strandat 191.405 kb on + strandat 191.405 kb on + strandat 191.406 kb on - strandat 191.538 kb on - strand, within EX31_RS05275at 191.546 kb on + strand, within EX31_RS05275at 191.546 kb on + strand, within EX31_RS05275at 191.546 kb on + strand, within EX31_RS05275at 191.546 kb on + strand, within EX31_RS05275at 191.546 kb on + strand, within EX31_RS05275at 191.546 kb on + strand, within EX31_RS05275at 191.546 kb on + strand, within EX31_RS05275at 191.547 kb on - strand, within EX31_RS05275at 191.547 kb on - strand, within EX31_RS05275at 191.547 kb on - strand, within EX31_RS05275at 191.547 kb on - strand, within EX31_RS05275at 191.547 kb on - strand, within EX31_RS05275at 191.590 kb on + strand, within EX31_RS05275at 191.591 kb on - strand, within EX31_RS05275at 191.591 kb on - strand, within EX31_RS05275at 191.591 kb on - strand, within EX31_RS05275at 191.597 kb on + strand, within EX31_RS05275at 191.597 kb on + strand, within EX31_RS05275at 191.597 kb on + strand, within EX31_RS05275at 191.598 kb on - strand, within EX31_RS05275at 191.598 kb on - strand, within EX31_RS05275at 191.811 kb on - strand, within EX31_RS05275at 191.850 kb on - strand, within EX31_RS05275at 191.850 kb on - strand, within EX31_RS05275at 191.850 kb on - strand, within EX31_RS05275at 191.979 kb on - strand, within EX31_RS05275at 191.995 kb on + strand, within EX31_RS05275at 191.995 kb on + strand, within EX31_RS05275at 191.995 kb on + strand, within EX31_RS05275at 191.995 kb on + strand, within EX31_RS05275at 191.995 kb on + strand, within EX31_RS05275at 191.996 kb on - strand, within EX31_RS05275at 191.996 kb on - strand, within EX31_RS05275at 191.999 kb on + strand, within EX31_RS05275at 192.000 kb on - strand, within EX31_RS05275at 192.000 kb on - strand, within EX31_RS05275at 192.000 kb on - strand, within EX31_RS05275at 192.000 kb on - strand, within EX31_RS05275at 192.142 kb on + strand, within EX31_RS05275at 192.142 kb on + strand, within EX31_RS05275at 192.149 kb on + strand, within EX31_RS05275at 192.150 kb on - strand, within EX31_RS05275at 192.150 kb on - strand, within EX31_RS05275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
189,604 + EX31_RS05260 0.55 -0.7
189,624 + EX31_RS05260 0.66 +0.2
189,624 + EX31_RS05260 0.66 +1.2
189,624 + EX31_RS05260 0.66 -0.5
189,624 + EX31_RS05260 0.66 -0.7
189,624 + EX31_RS05260 0.66 -0.1
189,624 + EX31_RS05260 0.66 -0.9
189,624 + EX31_RS05260 0.66 +0.9
189,624 + EX31_RS05260 0.66 -0.6
189,624 + EX31_RS05260 0.66 +0.5
189,625 - EX31_RS05260 0.67 +1.4
189,625 - EX31_RS05260 0.67 -0.3
189,625 - EX31_RS05260 0.67 +0.1
189,625 - EX31_RS05260 0.67 -0.4
189,625 - EX31_RS05260 0.67 -0.4
189,625 - EX31_RS05260 0.67 +0.7
189,625 - EX31_RS05260 0.67 +0.2
189,625 - EX31_RS05260 0.67 -1.0
189,721 + -0.8
189,721 + +0.5
189,721 + +0.2
189,722 - +1.5
189,722 - -0.9
189,745 - +0.2
189,757 - +0.3
189,765 - -1.6
189,834 + EX31_RS05265 0.15 -0.5
189,835 - EX31_RS05265 0.15 +0.0
189,864 + EX31_RS05265 0.20 -0.2
189,864 + EX31_RS05265 0.20 +1.2
189,865 - EX31_RS05265 0.20 +0.2
189,865 - EX31_RS05265 0.20 +0.3
189,865 - EX31_RS05265 0.20 -0.1
189,877 - EX31_RS05265 0.22 -0.2
189,891 + EX31_RS05265 0.25 -0.2
189,891 + EX31_RS05265 0.25 -0.5
189,891 + EX31_RS05265 0.25 +0.3
189,891 + EX31_RS05265 0.25 +0.4
189,891 + EX31_RS05265 0.25 +0.0
189,891 + EX31_RS05265 0.25 -0.4
189,891 + EX31_RS05265 0.25 -0.1
189,891 + EX31_RS05265 0.25 -0.1
189,891 + EX31_RS05265 0.25 +0.4
189,891 + EX31_RS05265 0.25 -0.6
189,891 + EX31_RS05265 0.25 -0.6
189,891 + EX31_RS05265 0.25 -0.2
189,891 + EX31_RS05265 0.25 +0.6
189,892 - EX31_RS05265 0.25 +0.3
189,892 - EX31_RS05265 0.25 +0.0
189,892 - EX31_RS05265 0.25 -0.5
189,892 - EX31_RS05265 0.25 -0.3
189,892 - EX31_RS05265 0.25 -1.0
189,892 - EX31_RS05265 0.25 +0.9
189,892 - EX31_RS05265 0.25 -0.3
189,892 - EX31_RS05265 0.25 -0.5
189,892 - EX31_RS05265 0.25 +0.7
189,892 - EX31_RS05265 0.25 -0.5
189,892 - EX31_RS05265 0.25 -0.2
189,892 - EX31_RS05265 0.25 +0.7
189,892 - EX31_RS05265 0.25 -0.3
189,892 - EX31_RS05265 0.25 +0.1
189,892 - EX31_RS05265 0.25 +0.4
189,892 - EX31_RS05265 0.25 +0.8
189,892 - EX31_RS05265 0.25 +0.1
189,957 - EX31_RS05265 0.37 +0.1
189,957 - EX31_RS05265 0.37 +1.0
190,015 - EX31_RS05265 0.48 -1.6
190,096 - EX31_RS05265 0.63 +1.0
190,096 - EX31_RS05265 0.63 +0.0
190,170 + EX31_RS05265 0.76 -0.8
190,171 - EX31_RS05265 0.77 +0.4
190,171 - EX31_RS05265 0.77 -0.5
190,171 - EX31_RS05265 0.77 -0.3
190,200 + EX31_RS05265 0.82 +0.4
190,201 - EX31_RS05265 0.82 -0.2
190,201 - EX31_RS05265 0.82 +0.8
190,252 + +0.1
190,252 + -1.0
190,252 + +0.4
190,253 - -0.4
190,279 + +0.9
190,284 + +0.3
190,284 + -0.3
190,285 - -1.0
190,297 + -0.1
190,297 + -0.3
190,298 - +0.0
190,298 - -1.5
190,329 + -0.3
190,330 - -0.8
190,341 + -0.9
190,352 + +0.3
190,353 - -0.2
190,353 - -0.2
190,353 - -0.3
190,358 + -0.1
190,358 + -0.3
190,359 - -0.4
190,359 - -0.1
190,400 - +0.2
190,407 - -0.3
190,407 - -0.1
190,409 + -0.3
190,409 + -0.1
190,409 + -0.3
190,410 - -0.3
190,410 - -0.6
190,410 - -0.4
190,424 + -0.4
190,424 + +0.7
190,425 - -0.6
190,435 - -0.8
190,438 + +1.2
190,438 + +0.9
190,439 - -0.8
190,447 + -0.1
190,448 - +0.1
190,448 - -0.3
190,502 + +0.4
190,502 + -0.1
190,503 - -0.4
190,578 + -1.7
190,578 + +0.4
190,579 - +0.3
190,626 + EX31_RS05270 0.17 +0.1
190,626 + EX31_RS05270 0.17 -0.4
190,627 - EX31_RS05270 0.17 +0.4
190,661 + EX31_RS05270 0.22 -2.7
190,713 + EX31_RS05270 0.31 -1.0
190,713 + EX31_RS05270 0.31 -0.8
190,714 - EX31_RS05270 0.31 -1.7
190,795 - EX31_RS05270 0.43 -0.7
191,043 + EX31_RS05270 0.82 -1.5
191,044 - EX31_RS05270 0.83 +0.2
191,062 + EX31_RS05270 0.85 -1.9
191,062 + EX31_RS05270 0.85 +0.4
191,062 + EX31_RS05270 0.85 +0.3
191,062 + EX31_RS05270 0.85 -0.7
191,062 + EX31_RS05270 0.85 -2.7
191,067 + EX31_RS05270 0.86 +0.6
191,141 + -0.1
191,152 + +1.0
191,152 + -0.5
191,163 + +0.2
191,163 + -0.6
191,164 - +0.1
191,167 + -0.1
191,188 - +0.5
191,219 + -0.6
191,226 + +0.1
191,226 + +1.2
191,226 + -0.1
191,227 - +0.0
191,227 - +1.4
191,229 + -1.2
191,229 + -0.3
191,229 + -0.3
191,229 + -0.2
191,229 + +0.5
191,229 + +0.2
191,229 + +0.2
191,230 - +0.9
191,230 - +0.7
191,230 - -0.8
191,230 - -1.0
191,231 + +1.5
191,231 + -0.4
191,231 + -0.3
191,232 - +0.9
191,232 - -0.8
191,232 - -0.3
191,237 + -0.5
191,238 - -0.2
191,280 + +0.3
191,296 + -1.0
191,335 - +0.3
191,405 + -0.2
191,405 + -0.0
191,405 + -0.1
191,405 + +0.1
191,406 - -0.3
191,538 - EX31_RS05275 0.20 +1.4
191,546 + EX31_RS05275 0.20 -0.1
191,546 + EX31_RS05275 0.20 +0.6
191,546 + EX31_RS05275 0.20 -0.9
191,546 + EX31_RS05275 0.20 -1.0
191,546 + EX31_RS05275 0.20 -0.7
191,546 + EX31_RS05275 0.20 -0.9
191,546 + EX31_RS05275 0.20 -0.3
191,547 - EX31_RS05275 0.20 +1.0
191,547 - EX31_RS05275 0.20 +0.9
191,547 - EX31_RS05275 0.20 +1.3
191,547 - EX31_RS05275 0.20 +0.0
191,547 - EX31_RS05275 0.20 -0.4
191,590 + EX31_RS05275 0.24 +0.5
191,591 - EX31_RS05275 0.24 -0.4
191,591 - EX31_RS05275 0.24 +0.2
191,591 - EX31_RS05275 0.24 -0.2
191,597 + EX31_RS05275 0.25 +0.6
191,597 + EX31_RS05275 0.25 -0.2
191,597 + EX31_RS05275 0.25 -0.7
191,598 - EX31_RS05275 0.25 -0.5
191,598 - EX31_RS05275 0.25 -0.4
191,811 - EX31_RS05275 0.44 +0.1
191,850 - EX31_RS05275 0.47 -0.6
191,850 - EX31_RS05275 0.47 +1.0
191,850 - EX31_RS05275 0.47 -0.2
191,979 - EX31_RS05275 0.59 -0.4
191,995 + EX31_RS05275 0.60 +0.5
191,995 + EX31_RS05275 0.60 +0.3
191,995 + EX31_RS05275 0.60 -1.2
191,995 + EX31_RS05275 0.60 +0.9
191,995 + EX31_RS05275 0.60 +0.3
191,996 - EX31_RS05275 0.60 -0.1
191,996 - EX31_RS05275 0.60 +0.3
191,999 + EX31_RS05275 0.60 +0.9
192,000 - EX31_RS05275 0.60 -1.3
192,000 - EX31_RS05275 0.60 -1.9
192,000 - EX31_RS05275 0.60 -0.6
192,000 - EX31_RS05275 0.60 -0.3
192,142 + EX31_RS05275 0.73 +0.2
192,142 + EX31_RS05275 0.73 -0.1
192,149 + EX31_RS05275 0.74 +0.4
192,150 - EX31_RS05275 0.74 -0.6
192,150 - EX31_RS05275 0.74 +1.9

Or see this region's nucleotide sequence