Strain Fitness in Rahnella sp. WP5 around EX31_RS23905

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS23895 and EX31_RS23900 are separated by 17 nucleotidesEX31_RS23900 and EX31_RS23905 are separated by 3 nucleotidesEX31_RS23905 and EX31_RS23910 are separated by 104 nucleotides EX31_RS23895: EX31_RS23895 - TetR/AcrR family transcriptional regulator, at 545,898 to 546,557 _RS23895 EX31_RS23900: EX31_RS23900 - DUF2236 domain-containing protein, at 546,575 to 547,441 _RS23900 EX31_RS23905: EX31_RS23905 - p-aminobenzoyl-glutamate transporter, at 547,445 to 548,968 _RS23905 EX31_RS23910: EX31_RS23910 - amidohydrolase, at 549,073 to 550,539 _RS23910 Position (kb) 547 548 549Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 546.555 kb on + strandat 546.555 kb on + strandat 546.567 kb on + strandat 546.572 kb on + strandat 546.591 kb on + strandat 546.591 kb on + strandat 546.591 kb on + strandat 546.591 kb on + strandat 546.591 kb on + strandat 546.592 kb on - strandat 546.592 kb on - strandat 546.636 kb on + strandat 546.636 kb on + strandat 546.636 kb on + strandat 546.637 kb on - strandat 546.745 kb on - strand, within EX31_RS23900at 546.745 kb on - strand, within EX31_RS23900at 546.811 kb on + strand, within EX31_RS23900at 546.811 kb on + strand, within EX31_RS23900at 546.871 kb on + strand, within EX31_RS23900at 546.901 kb on - strand, within EX31_RS23900at 546.951 kb on - strand, within EX31_RS23900at 546.972 kb on + strand, within EX31_RS23900at 546.973 kb on - strand, within EX31_RS23900at 547.001 kb on + strand, within EX31_RS23900at 547.001 kb on + strand, within EX31_RS23900at 547.067 kb on + strand, within EX31_RS23900at 547.067 kb on + strand, within EX31_RS23900at 547.068 kb on - strand, within EX31_RS23900at 547.068 kb on - strand, within EX31_RS23900at 547.068 kb on - strand, within EX31_RS23900at 547.068 kb on - strand, within EX31_RS23900at 547.070 kb on + strand, within EX31_RS23900at 547.070 kb on + strand, within EX31_RS23900at 547.071 kb on - strand, within EX31_RS23900at 547.137 kb on + strand, within EX31_RS23900at 547.137 kb on + strand, within EX31_RS23900at 547.138 kb on - strand, within EX31_RS23900at 547.145 kb on + strand, within EX31_RS23900at 547.146 kb on - strand, within EX31_RS23900at 547.146 kb on - strand, within EX31_RS23900at 547.146 kb on - strand, within EX31_RS23900at 547.146 kb on - strand, within EX31_RS23900at 547.146 kb on - strand, within EX31_RS23900at 547.146 kb on - strand, within EX31_RS23900at 547.200 kb on + strand, within EX31_RS23900at 547.200 kb on + strand, within EX31_RS23900at 547.281 kb on + strand, within EX31_RS23900at 547.375 kb on - strandat 547.491 kb on + strandat 547.491 kb on + strandat 547.491 kb on + strandat 547.560 kb on + strandat 547.560 kb on + strandat 547.560 kb on + strandat 547.560 kb on + strandat 547.561 kb on - strandat 547.561 kb on - strandat 547.561 kb on - strandat 547.561 kb on - strandat 547.561 kb on - strandat 547.561 kb on - strandat 547.561 kb on - strandat 547.561 kb on - strandat 547.588 kb on - strandat 547.588 kb on - strandat 547.708 kb on + strand, within EX31_RS23905at 547.708 kb on + strand, within EX31_RS23905at 547.708 kb on + strand, within EX31_RS23905at 547.708 kb on + strand, within EX31_RS23905at 547.724 kb on + strand, within EX31_RS23905at 547.725 kb on - strand, within EX31_RS23905at 547.771 kb on + strand, within EX31_RS23905at 547.771 kb on + strand, within EX31_RS23905at 547.772 kb on - strand, within EX31_RS23905at 547.877 kb on - strand, within EX31_RS23905at 547.879 kb on + strand, within EX31_RS23905at 547.880 kb on - strand, within EX31_RS23905at 547.880 kb on - strand, within EX31_RS23905at 548.045 kb on - strand, within EX31_RS23905at 548.057 kb on + strand, within EX31_RS23905at 548.058 kb on - strand, within EX31_RS23905at 548.058 kb on - strand, within EX31_RS23905at 548.269 kb on + strand, within EX31_RS23905at 548.321 kb on - strand, within EX31_RS23905at 548.325 kb on + strand, within EX31_RS23905at 548.325 kb on + strand, within EX31_RS23905at 548.325 kb on + strand, within EX31_RS23905at 548.326 kb on - strand, within EX31_RS23905at 548.326 kb on - strand, within EX31_RS23905at 548.326 kb on - strand, within EX31_RS23905at 548.584 kb on + strand, within EX31_RS23905at 548.584 kb on + strand, within EX31_RS23905at 548.584 kb on + strand, within EX31_RS23905at 548.585 kb on - strand, within EX31_RS23905at 548.585 kb on - strand, within EX31_RS23905at 548.585 kb on - strand, within EX31_RS23905at 548.585 kb on - strand, within EX31_RS23905at 548.585 kb on - strand, within EX31_RS23905at 548.585 kb on - strand, within EX31_RS23905at 548.586 kb on + strand, within EX31_RS23905at 548.586 kb on + strand, within EX31_RS23905at 548.586 kb on + strand, within EX31_RS23905at 548.586 kb on + strand, within EX31_RS23905at 548.586 kb on + strand, within EX31_RS23905at 548.586 kb on + strand, within EX31_RS23905at 548.586 kb on + strand, within EX31_RS23905at 548.586 kb on + strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.587 kb on - strand, within EX31_RS23905at 548.607 kb on - strand, within EX31_RS23905at 548.607 kb on - strand, within EX31_RS23905at 548.626 kb on - strand, within EX31_RS23905at 548.626 kb on - strand, within EX31_RS23905at 548.722 kb on + strand, within EX31_RS23905at 548.749 kb on + strand, within EX31_RS23905at 548.749 kb on + strand, within EX31_RS23905at 548.750 kb on - strand, within EX31_RS23905at 548.750 kb on - strand, within EX31_RS23905at 548.750 kb on - strand, within EX31_RS23905at 548.750 kb on - strand, within EX31_RS23905at 548.750 kb on - strand, within EX31_RS23905at 548.750 kb on - strand, within EX31_RS23905at 548.774 kb on + strand, within EX31_RS23905at 548.775 kb on - strand, within EX31_RS23905at 548.813 kb on - strand, within EX31_RS23905at 548.873 kb on + strandat 548.873 kb on + strandat 548.962 kb on + strandat 548.962 kb on + strandat 548.963 kb on - strandat 549.002 kb on - strandat 549.002 kb on - strandat 549.005 kb on + strandat 549.005 kb on + strandat 549.005 kb on + strandat 549.006 kb on - strandat 549.048 kb on + strandat 549.056 kb on + strandat 549.056 kb on + strandat 549.075 kb on - strandat 549.120 kb on - strandat 549.169 kb on + strandat 549.194 kb on - strandat 549.237 kb on + strand, within EX31_RS23910at 549.279 kb on + strand, within EX31_RS23910at 549.279 kb on + strand, within EX31_RS23910at 549.279 kb on + strand, within EX31_RS23910at 549.279 kb on + strand, within EX31_RS23910at 549.279 kb on + strand, within EX31_RS23910at 549.279 kb on + strand, within EX31_RS23910at 549.280 kb on - strand, within EX31_RS23910at 549.280 kb on - strand, within EX31_RS23910at 549.280 kb on - strand, within EX31_RS23910at 549.368 kb on + strand, within EX31_RS23910at 549.465 kb on + strand, within EX31_RS23910at 549.474 kb on + strand, within EX31_RS23910at 549.475 kb on - strand, within EX31_RS23910at 549.555 kb on - strand, within EX31_RS23910at 549.581 kb on + strand, within EX31_RS23910at 549.581 kb on + strand, within EX31_RS23910at 549.582 kb on - strand, within EX31_RS23910at 549.587 kb on + strand, within EX31_RS23910at 549.587 kb on + strand, within EX31_RS23910at 549.587 kb on + strand, within EX31_RS23910at 549.587 kb on + strand, within EX31_RS23910at 549.587 kb on + strand, within EX31_RS23910at 549.588 kb on - strand, within EX31_RS23910at 549.588 kb on - strand, within EX31_RS23910at 549.588 kb on - strand, within EX31_RS23910at 549.588 kb on - strand, within EX31_RS23910at 549.588 kb on - strand, within EX31_RS23910at 549.588 kb on - strand, within EX31_RS23910at 549.620 kb on + strand, within EX31_RS23910at 549.621 kb on - strand, within EX31_RS23910at 549.697 kb on + strand, within EX31_RS23910at 549.743 kb on - strand, within EX31_RS23910at 549.749 kb on + strand, within EX31_RS23910at 549.749 kb on + strand, within EX31_RS23910at 549.749 kb on + strand, within EX31_RS23910at 549.749 kb on + strand, within EX31_RS23910at 549.750 kb on - strand, within EX31_RS23910

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
546,555 + +0.4
546,555 + +0.2
546,567 + +0.0
546,572 + +0.3
546,591 + -0.3
546,591 + -0.2
546,591 + +0.7
546,591 + +0.1
546,591 + +0.0
546,592 - +0.1
546,592 - -0.2
546,636 + +0.4
546,636 + +1.1
546,636 + +1.2
546,637 - +0.3
546,745 - EX31_RS23900 0.20 +0.4
546,745 - EX31_RS23900 0.20 -0.2
546,811 + EX31_RS23900 0.27 +0.6
546,811 + EX31_RS23900 0.27 -0.3
546,871 + EX31_RS23900 0.34 -1.1
546,901 - EX31_RS23900 0.38 +0.4
546,951 - EX31_RS23900 0.43 +0.2
546,972 + EX31_RS23900 0.46 +0.5
546,973 - EX31_RS23900 0.46 -0.5
547,001 + EX31_RS23900 0.49 -0.1
547,001 + EX31_RS23900 0.49 -1.6
547,067 + EX31_RS23900 0.57 +0.5
547,067 + EX31_RS23900 0.57 -0.5
547,068 - EX31_RS23900 0.57 +0.9
547,068 - EX31_RS23900 0.57 +0.5
547,068 - EX31_RS23900 0.57 +0.4
547,068 - EX31_RS23900 0.57 +0.9
547,070 + EX31_RS23900 0.57 +1.1
547,070 + EX31_RS23900 0.57 -0.0
547,071 - EX31_RS23900 0.57 +1.3
547,137 + EX31_RS23900 0.65 -0.0
547,137 + EX31_RS23900 0.65 -0.8
547,138 - EX31_RS23900 0.65 -1.3
547,145 + EX31_RS23900 0.66 +0.9
547,146 - EX31_RS23900 0.66 +0.9
547,146 - EX31_RS23900 0.66 -0.2
547,146 - EX31_RS23900 0.66 -0.1
547,146 - EX31_RS23900 0.66 -0.1
547,146 - EX31_RS23900 0.66 -1.0
547,146 - EX31_RS23900 0.66 +0.5
547,200 + EX31_RS23900 0.72 +1.1
547,200 + EX31_RS23900 0.72 -0.9
547,281 + EX31_RS23900 0.81 +1.5
547,375 - +0.1
547,491 + +0.3
547,491 + +0.5
547,491 + +0.3
547,560 + +0.6
547,560 + -1.6
547,560 + +0.4
547,560 + +0.3
547,561 - -0.3
547,561 - +0.3
547,561 - -1.1
547,561 - -1.1
547,561 - +0.1
547,561 - -0.8
547,561 - -0.3
547,561 - -0.3
547,588 - -1.0
547,588 - +0.3
547,708 + EX31_RS23905 0.17 +0.1
547,708 + EX31_RS23905 0.17 -0.1
547,708 + EX31_RS23905 0.17 +0.2
547,708 + EX31_RS23905 0.17 +0.1
547,724 + EX31_RS23905 0.18 -1.0
547,725 - EX31_RS23905 0.18 -0.9
547,771 + EX31_RS23905 0.21 -1.0
547,771 + EX31_RS23905 0.21 +0.0
547,772 - EX31_RS23905 0.21 -0.7
547,877 - EX31_RS23905 0.28 +0.2
547,879 + EX31_RS23905 0.28 -0.4
547,880 - EX31_RS23905 0.29 +1.1
547,880 - EX31_RS23905 0.29 +0.2
548,045 - EX31_RS23905 0.39 +1.3
548,057 + EX31_RS23905 0.40 -0.6
548,058 - EX31_RS23905 0.40 -0.3
548,058 - EX31_RS23905 0.40 +0.1
548,269 + EX31_RS23905 0.54 +0.3
548,321 - EX31_RS23905 0.57 +0.3
548,325 + EX31_RS23905 0.58 -1.2
548,325 + EX31_RS23905 0.58 +0.5
548,325 + EX31_RS23905 0.58 +0.9
548,326 - EX31_RS23905 0.58 -0.2
548,326 - EX31_RS23905 0.58 -0.3
548,326 - EX31_RS23905 0.58 -0.9
548,584 + EX31_RS23905 0.75 -1.1
548,584 + EX31_RS23905 0.75 -1.6
548,584 + EX31_RS23905 0.75 +0.1
548,585 - EX31_RS23905 0.75 -1.4
548,585 - EX31_RS23905 0.75 -0.7
548,585 - EX31_RS23905 0.75 +0.6
548,585 - EX31_RS23905 0.75 +0.9
548,585 - EX31_RS23905 0.75 -1.4
548,585 - EX31_RS23905 0.75 -0.7
548,586 + EX31_RS23905 0.75 -0.2
548,586 + EX31_RS23905 0.75 -0.8
548,586 + EX31_RS23905 0.75 -0.2
548,586 + EX31_RS23905 0.75 -1.3
548,586 + EX31_RS23905 0.75 +1.0
548,586 + EX31_RS23905 0.75 -0.8
548,586 + EX31_RS23905 0.75 -0.6
548,586 + EX31_RS23905 0.75 -0.7
548,587 - EX31_RS23905 0.75 +1.4
548,587 - EX31_RS23905 0.75 -0.8
548,587 - EX31_RS23905 0.75 +1.0
548,587 - EX31_RS23905 0.75 -0.4
548,587 - EX31_RS23905 0.75 -0.9
548,587 - EX31_RS23905 0.75 -2.9
548,587 - EX31_RS23905 0.75 +0.7
548,587 - EX31_RS23905 0.75 +0.7
548,587 - EX31_RS23905 0.75 -1.1
548,587 - EX31_RS23905 0.75 -0.6
548,587 - EX31_RS23905 0.75 -1.1
548,587 - EX31_RS23905 0.75 -0.9
548,587 - EX31_RS23905 0.75 -0.6
548,587 - EX31_RS23905 0.75 +1.2
548,587 - EX31_RS23905 0.75 -0.3
548,587 - EX31_RS23905 0.75 -0.1
548,607 - EX31_RS23905 0.76 +1.2
548,607 - EX31_RS23905 0.76 -0.9
548,626 - EX31_RS23905 0.77 -1.0
548,626 - EX31_RS23905 0.77 +1.0
548,722 + EX31_RS23905 0.84 +0.2
548,749 + EX31_RS23905 0.86 -0.3
548,749 + EX31_RS23905 0.86 -1.3
548,750 - EX31_RS23905 0.86 -0.2
548,750 - EX31_RS23905 0.86 -0.4
548,750 - EX31_RS23905 0.86 -0.6
548,750 - EX31_RS23905 0.86 +0.2
548,750 - EX31_RS23905 0.86 +0.5
548,750 - EX31_RS23905 0.86 -0.1
548,774 + EX31_RS23905 0.87 -1.0
548,775 - EX31_RS23905 0.87 -0.8
548,813 - EX31_RS23905 0.90 -1.0
548,873 + +0.6
548,873 + +0.5
548,962 + -0.0
548,962 + +0.4
548,963 - +1.2
549,002 - -1.2
549,002 - +0.0
549,005 + +1.7
549,005 + +0.9
549,005 + -0.6
549,006 - +0.8
549,048 + +0.1
549,056 + +0.5
549,056 + -0.7
549,075 - +0.1
549,120 - -0.3
549,169 + +1.3
549,194 - -1.1
549,237 + EX31_RS23910 0.11 +0.6
549,279 + EX31_RS23910 0.14 -0.1
549,279 + EX31_RS23910 0.14 -0.8
549,279 + EX31_RS23910 0.14 +1.2
549,279 + EX31_RS23910 0.14 -0.6
549,279 + EX31_RS23910 0.14 -0.4
549,279 + EX31_RS23910 0.14 +0.5
549,280 - EX31_RS23910 0.14 +0.4
549,280 - EX31_RS23910 0.14 -0.3
549,280 - EX31_RS23910 0.14 -0.3
549,368 + EX31_RS23910 0.20 -0.0
549,465 + EX31_RS23910 0.27 -0.4
549,474 + EX31_RS23910 0.27 +1.3
549,475 - EX31_RS23910 0.27 -0.8
549,555 - EX31_RS23910 0.33 +0.2
549,581 + EX31_RS23910 0.35 +0.0
549,581 + EX31_RS23910 0.35 +0.2
549,582 - EX31_RS23910 0.35 +0.4
549,587 + EX31_RS23910 0.35 -0.1
549,587 + EX31_RS23910 0.35 +1.5
549,587 + EX31_RS23910 0.35 +1.2
549,587 + EX31_RS23910 0.35 -0.8
549,587 + EX31_RS23910 0.35 +0.2
549,588 - EX31_RS23910 0.35 +0.6
549,588 - EX31_RS23910 0.35 +1.6
549,588 - EX31_RS23910 0.35 +0.9
549,588 - EX31_RS23910 0.35 -0.3
549,588 - EX31_RS23910 0.35 +0.7
549,588 - EX31_RS23910 0.35 +1.2
549,620 + EX31_RS23910 0.37 -0.1
549,621 - EX31_RS23910 0.37 -1.1
549,697 + EX31_RS23910 0.43 -1.9
549,743 - EX31_RS23910 0.46 +2.5
549,749 + EX31_RS23910 0.46 +1.9
549,749 + EX31_RS23910 0.46 +0.3
549,749 + EX31_RS23910 0.46 -0.7
549,749 + EX31_RS23910 0.46 +0.0
549,750 - EX31_RS23910 0.46 -0.1

Or see this region's nucleotide sequence