Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23045 and EX31_RS23050 are separated by 212 nucleotides EX31_RS23050 and EX31_RS23055 are separated by 4 nucleotides
EX31_RS23045: EX31_RS23045 - fluoride efflux transporter CrcB, at 371,661 to 372,044
_RS23045
EX31_RS23050: EX31_RS23050 - GNAT family N-acetyltransferase, at 372,257 to 372,679
_RS23050
EX31_RS23055: EX31_RS23055 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 372,684 to 374,030
_RS23055
Position (kb) 372
373 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 371.261 kb on + strand at 371.279 kb on + strand at 371.279 kb on + strand at 371.280 kb on - strand at 371.286 kb on - strand at 371.288 kb on + strand at 371.289 kb on - strand at 371.289 kb on - strand at 371.328 kb on + strand at 371.329 kb on - strand at 371.329 kb on - strand at 371.414 kb on + strand at 371.423 kb on + strand at 371.423 kb on + strand at 371.423 kb on + strand at 371.423 kb on + strand at 371.423 kb on + strand at 371.423 kb on + strand at 371.423 kb on + strand at 371.423 kb on + strand at 371.423 kb on + strand at 371.424 kb on - strand at 371.424 kb on - strand at 371.424 kb on - strand at 371.424 kb on - strand at 371.424 kb on - strand at 371.424 kb on - strand at 371.424 kb on - strand at 371.510 kb on + strand at 371.510 kb on + strand at 371.510 kb on + strand at 371.511 kb on - strand at 371.511 kb on - strand at 371.511 kb on - strand at 371.511 kb on - strand at 371.511 kb on - strand at 371.542 kb on + strand at 371.543 kb on - strand at 371.545 kb on + strand at 371.545 kb on + strand at 371.545 kb on + strand at 371.546 kb on - strand at 371.546 kb on - strand at 371.546 kb on - strand at 371.546 kb on - strand at 371.555 kb on + strand at 371.555 kb on + strand at 371.556 kb on - strand at 371.556 kb on - strand at 371.556 kb on - strand at 371.572 kb on + strand at 371.656 kb on + strand at 371.656 kb on + strand at 371.657 kb on - strand at 371.657 kb on - strand at 371.690 kb on + strand at 371.690 kb on + strand at 371.691 kb on - strand at 371.691 kb on - strand at 371.700 kb on + strand, within EX31_RS23045 at 371.742 kb on + strand, within EX31_RS23045 at 371.742 kb on + strand, within EX31_RS23045 at 371.772 kb on + strand, within EX31_RS23045 at 371.772 kb on + strand, within EX31_RS23045 at 371.772 kb on + strand, within EX31_RS23045 at 371.772 kb on + strand, within EX31_RS23045 at 371.772 kb on + strand, within EX31_RS23045 at 371.773 kb on - strand, within EX31_RS23045 at 371.773 kb on - strand, within EX31_RS23045 at 371.773 kb on - strand, within EX31_RS23045 at 371.779 kb on + strand, within EX31_RS23045 at 371.779 kb on + strand, within EX31_RS23045 at 371.779 kb on + strand, within EX31_RS23045 at 371.779 kb on + strand, within EX31_RS23045 at 371.779 kb on + strand, within EX31_RS23045 at 371.779 kb on + strand, within EX31_RS23045 at 371.779 kb on + strand, within EX31_RS23045 at 371.779 kb on + strand, within EX31_RS23045 at 371.780 kb on - strand, within EX31_RS23045 at 371.780 kb on - strand, within EX31_RS23045 at 371.780 kb on - strand, within EX31_RS23045 at 371.780 kb on - strand, within EX31_RS23045 at 371.780 kb on - strand, within EX31_RS23045 at 371.780 kb on - strand, within EX31_RS23045 at 371.780 kb on - strand, within EX31_RS23045 at 371.983 kb on + strand, within EX31_RS23045 at 371.983 kb on + strand, within EX31_RS23045 at 371.983 kb on + strand, within EX31_RS23045 at 371.984 kb on - strand, within EX31_RS23045 at 371.984 kb on - strand, within EX31_RS23045 at 371.984 kb on - strand, within EX31_RS23045 at 371.984 kb on - strand, within EX31_RS23045 at 371.984 kb on - strand, within EX31_RS23045 at 372.005 kb on + strand, within EX31_RS23045 at 372.030 kb on + strand at 372.031 kb on - strand at 372.031 kb on - strand at 372.031 kb on - strand at 372.038 kb on + strand at 372.038 kb on + strand at 372.039 kb on - strand at 372.039 kb on - strand at 372.039 kb on - strand at 372.039 kb on - strand at 372.039 kb on - strand at 372.044 kb on + strand at 372.045 kb on - strand at 372.045 kb on - strand at 372.045 kb on - strand at 372.050 kb on + strand at 372.050 kb on + strand at 372.050 kb on + strand at 372.050 kb on + strand at 372.050 kb on + strand at 372.051 kb on - strand at 372.051 kb on - strand at 372.051 kb on - strand at 372.051 kb on - strand at 372.051 kb on - strand at 372.051 kb on - strand at 372.051 kb on - strand at 372.063 kb on - strand at 372.095 kb on + strand at 372.135 kb on + strand at 372.176 kb on + strand at 372.177 kb on - strand at 372.177 kb on - strand at 372.177 kb on - strand at 372.177 kb on - strand at 372.217 kb on + strand at 372.218 kb on - strand at 372.218 kb on - strand at 372.261 kb on + strand at 372.261 kb on + strand at 372.393 kb on + strand, within EX31_RS23050 at 372.485 kb on + strand, within EX31_RS23050 at 372.485 kb on + strand, within EX31_RS23050 at 372.485 kb on + strand, within EX31_RS23050 at 372.485 kb on + strand, within EX31_RS23050 at 372.485 kb on + strand, within EX31_RS23050 at 372.660 kb on - strand at 372.660 kb on - strand at 372.660 kb on - strand at 372.660 kb on - strand at 372.758 kb on + strand at 372.947 kb on - strand, within EX31_RS23055 at 372.947 kb on - strand, within EX31_RS23055 at 372.966 kb on - strand, within EX31_RS23055 at 373.120 kb on + strand, within EX31_RS23055 at 373.132 kb on + strand, within EX31_RS23055 at 373.235 kb on + strand, within EX31_RS23055 at 373.235 kb on + strand, within EX31_RS23055 at 373.236 kb on - strand, within EX31_RS23055 at 373.236 kb on - strand, within EX31_RS23055 at 373.267 kb on + strand, within EX31_RS23055 at 373.268 kb on - strand, within EX31_RS23055 at 373.268 kb on - strand, within EX31_RS23055 at 373.307 kb on + strand, within EX31_RS23055 at 373.308 kb on - strand, within EX31_RS23055 at 373.609 kb on + strand, within EX31_RS23055 at 373.610 kb on - strand, within EX31_RS23055
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 371,261 + -0.8 371,279 + -0.6 371,279 + +0.7 371,280 - +0.9 371,286 - -0.6 371,288 + -1.0 371,289 - -0.5 371,289 - +0.4 371,328 + -0.3 371,329 - +1.4 371,329 - +0.7 371,414 + -0.6 371,423 + +0.6 371,423 + -0.1 371,423 + +0.6 371,423 + +0.4 371,423 + -0.6 371,423 + +0.2 371,423 + +0.2 371,423 + -0.3 371,423 + -0.2 371,424 - -1.9 371,424 - -0.1 371,424 - +0.1 371,424 - -1.5 371,424 - +0.3 371,424 - -1.2 371,424 - -0.1 371,510 + -0.0 371,510 + -1.2 371,510 + -0.0 371,511 - +0.5 371,511 - -2.0 371,511 - -3.2 371,511 - -0.2 371,511 - -0.1 371,542 + +1.2 371,543 - +0.1 371,545 + +0.6 371,545 + -0.2 371,545 + +0.5 371,546 - +0.8 371,546 - -0.3 371,546 - +0.3 371,546 - +0.3 371,555 + +0.8 371,555 + +0.2 371,556 - -0.4 371,556 - -0.9 371,556 - -0.7 371,572 + +0.1 371,656 + +0.5 371,656 + +1.4 371,657 - +1.2 371,657 - +0.0 371,690 + -2.1 371,690 + -0.3 371,691 - -0.4 371,691 - -0.2 371,700 + EX31_RS23045 0.10 -1.7 371,742 + EX31_RS23045 0.21 -0.4 371,742 + EX31_RS23045 0.21 +0.3 371,772 + EX31_RS23045 0.29 -0.2 371,772 + EX31_RS23045 0.29 -0.3 371,772 + EX31_RS23045 0.29 -0.5 371,772 + EX31_RS23045 0.29 +0.3 371,772 + EX31_RS23045 0.29 -1.3 371,773 - EX31_RS23045 0.29 -1.4 371,773 - EX31_RS23045 0.29 -2.2 371,773 - EX31_RS23045 0.29 -3.0 371,779 + EX31_RS23045 0.31 -0.4 371,779 + EX31_RS23045 0.31 -0.8 371,779 + EX31_RS23045 0.31 -0.6 371,779 + EX31_RS23045 0.31 -0.7 371,779 + EX31_RS23045 0.31 -0.9 371,779 + EX31_RS23045 0.31 +0.1 371,779 + EX31_RS23045 0.31 -0.4 371,779 + EX31_RS23045 0.31 -0.7 371,780 - EX31_RS23045 0.31 -0.3 371,780 - EX31_RS23045 0.31 -1.6 371,780 - EX31_RS23045 0.31 +0.1 371,780 - EX31_RS23045 0.31 +0.2 371,780 - EX31_RS23045 0.31 -0.1 371,780 - EX31_RS23045 0.31 +0.5 371,780 - EX31_RS23045 0.31 +0.4 371,983 + EX31_RS23045 0.84 -0.9 371,983 + EX31_RS23045 0.84 +0.6 371,983 + EX31_RS23045 0.84 -0.5 371,984 - EX31_RS23045 0.84 -0.4 371,984 - EX31_RS23045 0.84 -0.3 371,984 - EX31_RS23045 0.84 -0.2 371,984 - EX31_RS23045 0.84 +0.4 371,984 - EX31_RS23045 0.84 -1.6 372,005 + EX31_RS23045 0.90 +0.1 372,030 + -1.1 372,031 - +1.1 372,031 - -0.3 372,031 - -0.7 372,038 + +0.2 372,038 + -0.2 372,039 - +0.1 372,039 - +0.1 372,039 - -0.5 372,039 - -0.2 372,039 - +0.3 372,044 + -0.2 372,045 - -0.0 372,045 - +1.0 372,045 - +0.1 372,050 + -0.1 372,050 + +0.1 372,050 + -0.8 372,050 + -0.9 372,050 + +0.5 372,051 - -0.5 372,051 - +0.2 372,051 - +0.3 372,051 - +0.7 372,051 - -2.0 372,051 - -1.0 372,051 - +1.4 372,063 - +0.7 372,095 + -0.6 372,135 + +0.6 372,176 + +0.2 372,177 - -1.5 372,177 - +1.0 372,177 - -0.4 372,177 - +1.8 372,217 + -0.3 372,218 - -1.4 372,218 - -0.2 372,261 + +1.3 372,261 + -1.1 372,393 + EX31_RS23050 0.32 -1.1 372,485 + EX31_RS23050 0.54 -0.1 372,485 + EX31_RS23050 0.54 -0.4 372,485 + EX31_RS23050 0.54 -0.4 372,485 + EX31_RS23050 0.54 -1.3 372,485 + EX31_RS23050 0.54 -0.1 372,660 - -0.8 372,660 - -0.4 372,660 - +0.6 372,660 - -1.0 372,758 + +1.4 372,947 - EX31_RS23055 0.20 -1.4 372,947 - EX31_RS23055 0.20 -0.9 372,966 - EX31_RS23055 0.21 +1.2 373,120 + EX31_RS23055 0.32 -1.1 373,132 + EX31_RS23055 0.33 -1.4 373,235 + EX31_RS23055 0.41 -0.4 373,235 + EX31_RS23055 0.41 -0.6 373,236 - EX31_RS23055 0.41 +0.3 373,236 - EX31_RS23055 0.41 -0.4 373,267 + EX31_RS23055 0.43 +2.9 373,268 - EX31_RS23055 0.43 -0.7 373,268 - EX31_RS23055 0.43 +0.4 373,307 + EX31_RS23055 0.46 +0.2 373,308 - EX31_RS23055 0.46 -0.5 373,609 + EX31_RS23055 0.69 +0.0 373,610 - EX31_RS23055 0.69 -0.1
Or see this region's nucleotide sequence