Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18145 and EX31_RS18150 are separated by 85 nucleotides EX31_RS18150 and EX31_RS18155 are separated by 51 nucleotides EX31_RS18155 and EX31_RS18160 are separated by 179 nucleotides
EX31_RS18145: EX31_RS18145 - aspartate/tyrosine/aromatic aminotransferase, at 194,199 to 195,389
_RS18145
EX31_RS18150: EX31_RS18150 - MBL fold metallo-hydrolase, at 195,475 to 196,122
_RS18150
EX31_RS18155: EX31_RS18155 - YcbK family protein, at 196,174 to 196,725
_RS18155
EX31_RS18160: EX31_RS18160 - L,D-transpeptidase, at 196,905 to 198,755
_RS18160
Position (kb) 195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 194.643 kb on + strand, within EX31_RS18145 at 194.643 kb on + strand, within EX31_RS18145 at 194.643 kb on + strand, within EX31_RS18145 at 194.646 kb on + strand, within EX31_RS18145 at 194.947 kb on + strand, within EX31_RS18145 at 194.949 kb on + strand, within EX31_RS18145 at 194.949 kb on + strand, within EX31_RS18145 at 194.950 kb on - strand, within EX31_RS18145 at 194.950 kb on - strand, within EX31_RS18145 at 194.950 kb on - strand, within EX31_RS18145 at 194.950 kb on - strand, within EX31_RS18145 at 194.962 kb on + strand, within EX31_RS18145 at 194.962 kb on + strand, within EX31_RS18145 at 194.962 kb on + strand, within EX31_RS18145 at 194.972 kb on + strand, within EX31_RS18145 at 194.972 kb on + strand, within EX31_RS18145 at 194.972 kb on + strand, within EX31_RS18145 at 194.972 kb on + strand, within EX31_RS18145 at 194.972 kb on + strand, within EX31_RS18145 at 194.972 kb on + strand, within EX31_RS18145 at 194.972 kb on + strand, within EX31_RS18145 at 194.973 kb on - strand, within EX31_RS18145 at 195.045 kb on + strand, within EX31_RS18145 at 195.079 kb on + strand, within EX31_RS18145 at 195.130 kb on + strand, within EX31_RS18145 at 195.158 kb on + strand, within EX31_RS18145 at 195.158 kb on + strand, within EX31_RS18145 at 195.218 kb on + strand, within EX31_RS18145 at 195.218 kb on + strand, within EX31_RS18145 at 195.221 kb on + strand, within EX31_RS18145 at 195.222 kb on - strand, within EX31_RS18145 at 195.271 kb on + strand at 195.271 kb on + strand at 195.271 kb on + strand at 195.301 kb on - strand at 195.320 kb on + strand at 195.460 kb on - strand at 195.460 kb on - strand at 195.472 kb on + strand at 195.473 kb on - strand at 195.473 kb on - strand at 195.473 kb on - strand at 195.473 kb on - strand at 195.473 kb on - strand at 195.517 kb on - strand at 195.559 kb on - strand, within EX31_RS18150 at 195.559 kb on - strand, within EX31_RS18150 at 195.587 kb on - strand, within EX31_RS18150 at 195.587 kb on - strand, within EX31_RS18150 at 195.697 kb on - strand, within EX31_RS18150 at 195.697 kb on - strand, within EX31_RS18150 at 195.983 kb on - strand, within EX31_RS18150 at 196.060 kb on - strand at 196.104 kb on + strand at 196.105 kb on - strand at 196.107 kb on + strand at 196.107 kb on + strand at 196.107 kb on + strand at 196.108 kb on - strand at 196.108 kb on - strand at 196.163 kb on - strand at 196.163 kb on - strand at 196.167 kb on - strand at 196.167 kb on - strand at 196.167 kb on - strand at 196.215 kb on + strand at 196.216 kb on - strand at 196.229 kb on + strand at 196.230 kb on - strand, within EX31_RS18155 at 196.234 kb on + strand, within EX31_RS18155 at 196.235 kb on - strand, within EX31_RS18155 at 196.235 kb on - strand, within EX31_RS18155 at 196.235 kb on - strand, within EX31_RS18155 at 196.328 kb on + strand, within EX31_RS18155 at 196.328 kb on + strand, within EX31_RS18155 at 196.328 kb on + strand, within EX31_RS18155 at 196.328 kb on + strand, within EX31_RS18155 at 196.329 kb on - strand, within EX31_RS18155 at 196.329 kb on - strand, within EX31_RS18155 at 196.449 kb on - strand, within EX31_RS18155 at 196.594 kb on - strand, within EX31_RS18155 at 196.699 kb on - strand at 196.735 kb on - strand at 196.735 kb on - strand at 196.735 kb on - strand at 196.788 kb on + strand at 196.789 kb on - strand at 196.789 kb on - strand at 196.822 kb on + strand at 196.822 kb on + strand at 196.822 kb on + strand at 196.822 kb on + strand at 196.823 kb on - strand at 196.823 kb on - strand at 196.823 kb on - strand at 196.824 kb on + strand at 196.824 kb on + strand at 196.825 kb on - strand at 196.825 kb on - strand at 196.825 kb on - strand at 196.825 kb on - strand at 196.825 kb on - strand at 196.872 kb on - strand at 196.872 kb on - strand at 196.884 kb on - strand at 196.891 kb on + strand at 196.892 kb on - strand at 196.897 kb on + strand at 196.897 kb on + strand at 196.898 kb on - strand at 196.907 kb on - strand at 196.907 kb on - strand at 196.907 kb on - strand at 196.966 kb on + strand at 196.967 kb on - strand at 196.998 kb on - strand at 197.026 kb on + strand at 197.045 kb on + strand at 197.046 kb on - strand at 197.046 kb on - strand at 197.046 kb on - strand at 197.046 kb on - strand at 197.046 kb on - strand at 197.046 kb on - strand at 197.046 kb on - strand at 197.056 kb on - strand at 197.065 kb on + strand at 197.065 kb on + strand at 197.065 kb on + strand at 197.065 kb on + strand at 197.065 kb on + strand at 197.065 kb on + strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.066 kb on - strand at 197.069 kb on + strand at 197.069 kb on + strand at 197.069 kb on + strand at 197.069 kb on + strand at 197.069 kb on + strand at 197.070 kb on - strand at 197.070 kb on - strand at 197.070 kb on - strand at 197.070 kb on - strand at 197.070 kb on - strand at 197.070 kb on - strand at 197.070 kb on - strand at 197.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 194,643 + EX31_RS18145 0.37 -0.8 194,643 + EX31_RS18145 0.37 -0.7 194,643 + EX31_RS18145 0.37 +0.0 194,646 + EX31_RS18145 0.38 +0.5 194,947 + EX31_RS18145 0.63 -1.6 194,949 + EX31_RS18145 0.63 -0.3 194,949 + EX31_RS18145 0.63 +0.6 194,950 - EX31_RS18145 0.63 +0.6 194,950 - EX31_RS18145 0.63 -0.7 194,950 - EX31_RS18145 0.63 -0.9 194,950 - EX31_RS18145 0.63 -0.7 194,962 + EX31_RS18145 0.64 +1.0 194,962 + EX31_RS18145 0.64 +0.4 194,962 + EX31_RS18145 0.64 -0.1 194,972 + EX31_RS18145 0.65 -0.2 194,972 + EX31_RS18145 0.65 +0.3 194,972 + EX31_RS18145 0.65 +0.2 194,972 + EX31_RS18145 0.65 +0.3 194,972 + EX31_RS18145 0.65 +1.2 194,972 + EX31_RS18145 0.65 -0.3 194,972 + EX31_RS18145 0.65 +0.8 194,973 - EX31_RS18145 0.65 -0.3 195,045 + EX31_RS18145 0.71 -0.0 195,079 + EX31_RS18145 0.74 -1.2 195,130 + EX31_RS18145 0.78 -0.1 195,158 + EX31_RS18145 0.81 -0.7 195,158 + EX31_RS18145 0.81 +0.7 195,218 + EX31_RS18145 0.86 -0.8 195,218 + EX31_RS18145 0.86 +0.4 195,221 + EX31_RS18145 0.86 +0.8 195,222 - EX31_RS18145 0.86 +0.0 195,271 + +0.6 195,271 + -0.6 195,271 + -1.4 195,301 - -0.4 195,320 + +0.5 195,460 - -0.6 195,460 - +1.4 195,472 + -0.6 195,473 - +0.5 195,473 - +0.7 195,473 - -0.6 195,473 - +0.2 195,473 - +2.2 195,517 - -0.3 195,559 - EX31_RS18150 0.13 -1.2 195,559 - EX31_RS18150 0.13 +0.6 195,587 - EX31_RS18150 0.17 -0.6 195,587 - EX31_RS18150 0.17 -0.4 195,697 - EX31_RS18150 0.34 -2.3 195,697 - EX31_RS18150 0.34 +0.5 195,983 - EX31_RS18150 0.78 -0.5 196,060 - +0.2 196,104 + +0.4 196,105 - -0.3 196,107 + -0.5 196,107 + -1.1 196,107 + +0.2 196,108 - -0.9 196,108 - +0.2 196,163 - -0.4 196,163 - +2.1 196,167 - -0.5 196,167 - -1.0 196,167 - -0.5 196,215 + -1.1 196,216 - -0.9 196,229 + -1.1 196,230 - EX31_RS18155 0.10 -0.5 196,234 + EX31_RS18155 0.11 -0.6 196,235 - EX31_RS18155 0.11 -2.5 196,235 - EX31_RS18155 0.11 -0.6 196,235 - EX31_RS18155 0.11 +0.5 196,328 + EX31_RS18155 0.28 +0.1 196,328 + EX31_RS18155 0.28 +0.2 196,328 + EX31_RS18155 0.28 +0.6 196,328 + EX31_RS18155 0.28 -2.1 196,329 - EX31_RS18155 0.28 +0.0 196,329 - EX31_RS18155 0.28 +0.1 196,449 - EX31_RS18155 0.50 +0.8 196,594 - EX31_RS18155 0.76 +0.4 196,699 - +0.2 196,735 - +0.5 196,735 - +0.3 196,735 - +0.1 196,788 + +0.7 196,789 - -1.1 196,789 - -0.7 196,822 + +0.1 196,822 + -1.2 196,822 + -0.4 196,822 + +0.6 196,823 - -0.2 196,823 - -0.2 196,823 - +0.0 196,824 + -0.2 196,824 + -0.5 196,825 - +0.3 196,825 - +1.0 196,825 - -0.1 196,825 - -0.3 196,825 - -0.1 196,872 - +1.4 196,872 - +0.4 196,884 - +0.3 196,891 + -0.7 196,892 - +0.5 196,897 + -2.3 196,897 + -0.4 196,898 - +0.2 196,907 - +0.6 196,907 - -1.7 196,907 - -0.9 196,966 + -1.1 196,967 - -0.0 196,998 - -2.4 197,026 + -1.2 197,045 + -1.6 197,046 - -0.7 197,046 - -0.3 197,046 - -0.2 197,046 - -0.9 197,046 - -3.1 197,046 - +1.3 197,046 - +0.4 197,056 - +0.3 197,065 + -2.6 197,065 + +0.5 197,065 + -2.1 197,065 + +0.1 197,065 + -1.3 197,065 + +0.4 197,066 - +0.4 197,066 - -0.3 197,066 - -0.4 197,066 - -0.5 197,066 - -0.9 197,066 - -1.3 197,066 - -0.5 197,066 - -0.0 197,066 - +0.2 197,066 - -1.2 197,066 - -3.0 197,066 - -0.3 197,066 - +0.8 197,066 - -0.6 197,066 - -0.2 197,069 + -1.1 197,069 + -0.7 197,069 + -0.2 197,069 + +0.3 197,069 + -0.7 197,070 - +0.2 197,070 - -0.3 197,070 - -2.1 197,070 - -1.5 197,070 - -0.7 197,070 - +0.3 197,070 - -0.4 197,073 - -1.0
Or see this region's nucleotide sequence