Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17700 and EX31_RS17705 overlap by 4 nucleotides EX31_RS17705 and EX31_RS17710 are separated by 26 nucleotides EX31_RS17710 and EX31_RS17715 are separated by 140 nucleotides
EX31_RS17700: EX31_RS17700 - efflux RND transporter permease subunit, at 91,078 to 94,152
_RS17700
EX31_RS17705: EX31_RS17705 - efflux RND transporter periplasmic adaptor subunit, at 94,149 to 95,291
_RS17705
EX31_RS17710: EX31_RS17710 - hypothetical protein, at 95,318 to 95,482
_RS17710
EX31_RS17715: EX31_RS17715 - MipA/OmpV family protein, at 95,623 to 96,408
_RS17715
Position (kb) 94
95
96 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 93.149 kb on - strand, within EX31_RS17700 at 93.149 kb on - strand, within EX31_RS17700 at 93.171 kb on + strand, within EX31_RS17700 at 93.172 kb on - strand, within EX31_RS17700 at 93.258 kb on + strand, within EX31_RS17700 at 93.258 kb on + strand, within EX31_RS17700 at 93.259 kb on - strand, within EX31_RS17700 at 93.385 kb on - strand, within EX31_RS17700 at 93.485 kb on - strand, within EX31_RS17700 at 93.574 kb on - strand, within EX31_RS17700 at 93.643 kb on - strand, within EX31_RS17700 at 93.698 kb on + strand, within EX31_RS17700 at 93.698 kb on + strand, within EX31_RS17700 at 93.699 kb on - strand, within EX31_RS17700 at 93.900 kb on - strand at 93.900 kb on - strand at 93.931 kb on - strand at 94.040 kb on + strand at 94.063 kb on + strand at 94.064 kb on - strand at 94.064 kb on - strand at 94.075 kb on - strand at 94.075 kb on - strand at 94.233 kb on + strand at 94.233 kb on + strand at 94.233 kb on + strand at 94.234 kb on - strand at 94.234 kb on - strand at 94.252 kb on - strand at 94.252 kb on - strand at 94.263 kb on - strand at 94.263 kb on - strand at 94.267 kb on + strand, within EX31_RS17705 at 94.397 kb on + strand, within EX31_RS17705 at 94.398 kb on - strand, within EX31_RS17705 at 94.454 kb on + strand, within EX31_RS17705 at 94.545 kb on + strand, within EX31_RS17705 at 94.546 kb on - strand, within EX31_RS17705 at 94.551 kb on + strand, within EX31_RS17705 at 94.552 kb on - strand, within EX31_RS17705 at 94.553 kb on + strand, within EX31_RS17705 at 94.553 kb on + strand, within EX31_RS17705 at 94.553 kb on + strand, within EX31_RS17705 at 94.553 kb on + strand, within EX31_RS17705 at 94.553 kb on + strand, within EX31_RS17705 at 94.554 kb on - strand, within EX31_RS17705 at 94.554 kb on - strand, within EX31_RS17705 at 94.554 kb on - strand, within EX31_RS17705 at 94.554 kb on - strand, within EX31_RS17705 at 94.554 kb on - strand, within EX31_RS17705 at 94.554 kb on - strand, within EX31_RS17705 at 94.556 kb on + strand, within EX31_RS17705 at 94.556 kb on + strand, within EX31_RS17705 at 94.556 kb on + strand, within EX31_RS17705 at 94.854 kb on + strand, within EX31_RS17705 at 94.855 kb on - strand, within EX31_RS17705 at 94.855 kb on - strand, within EX31_RS17705 at 94.855 kb on - strand, within EX31_RS17705 at 94.863 kb on - strand, within EX31_RS17705 at 94.863 kb on - strand, within EX31_RS17705 at 94.965 kb on - strand, within EX31_RS17705 at 95.068 kb on - strand, within EX31_RS17705 at 95.068 kb on - strand, within EX31_RS17705 at 95.282 kb on + strand at 95.283 kb on - strand at 95.283 kb on - strand at 95.320 kb on - strand at 95.352 kb on + strand, within EX31_RS17710 at 95.353 kb on - strand, within EX31_RS17710 at 95.432 kb on + strand, within EX31_RS17710 at 95.432 kb on + strand, within EX31_RS17710 at 95.433 kb on - strand, within EX31_RS17710 at 95.433 kb on - strand, within EX31_RS17710 at 95.433 kb on - strand, within EX31_RS17710 at 95.474 kb on - strand at 95.540 kb on - strand at 95.558 kb on + strand at 95.558 kb on + strand at 95.559 kb on - strand at 95.559 kb on - strand at 95.604 kb on + strand at 95.605 kb on - strand at 95.605 kb on - strand at 95.639 kb on + strand at 95.640 kb on - strand at 95.755 kb on + strand, within EX31_RS17715 at 95.876 kb on - strand, within EX31_RS17715 at 95.886 kb on + strand, within EX31_RS17715 at 95.886 kb on + strand, within EX31_RS17715 at 95.886 kb on + strand, within EX31_RS17715 at 95.886 kb on + strand, within EX31_RS17715 at 95.886 kb on + strand, within EX31_RS17715 at 95.886 kb on + strand, within EX31_RS17715 at 95.886 kb on + strand, within EX31_RS17715 at 95.886 kb on + strand, within EX31_RS17715 at 95.886 kb on + strand, within EX31_RS17715 at 95.887 kb on - strand, within EX31_RS17715 at 95.887 kb on - strand, within EX31_RS17715 at 95.887 kb on - strand, within EX31_RS17715 at 95.887 kb on - strand, within EX31_RS17715 at 95.887 kb on - strand, within EX31_RS17715 at 95.887 kb on - strand, within EX31_RS17715 at 95.887 kb on - strand, within EX31_RS17715 at 95.897 kb on - strand, within EX31_RS17715 at 96.095 kb on + strand, within EX31_RS17715 at 96.163 kb on + strand, within EX31_RS17715 at 96.163 kb on + strand, within EX31_RS17715 at 96.164 kb on - strand, within EX31_RS17715 at 96.165 kb on + strand, within EX31_RS17715 at 96.165 kb on + strand, within EX31_RS17715 at 96.165 kb on + strand, within EX31_RS17715 at 96.165 kb on + strand, within EX31_RS17715 at 96.165 kb on + strand, within EX31_RS17715 at 96.165 kb on + strand, within EX31_RS17715 at 96.166 kb on - strand, within EX31_RS17715 at 96.166 kb on - strand, within EX31_RS17715 at 96.166 kb on - strand, within EX31_RS17715 at 96.171 kb on + strand, within EX31_RS17715 at 96.172 kb on - strand, within EX31_RS17715 at 96.178 kb on + strand, within EX31_RS17715 at 96.178 kb on + strand, within EX31_RS17715 at 96.178 kb on + strand, within EX31_RS17715 at 96.179 kb on - strand, within EX31_RS17715 at 96.179 kb on - strand, within EX31_RS17715 at 96.179 kb on - strand, within EX31_RS17715 at 96.224 kb on - strand, within EX31_RS17715
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 93,149 - EX31_RS17700 0.67 -0.9 93,149 - EX31_RS17700 0.67 -0.3 93,171 + EX31_RS17700 0.68 -0.4 93,172 - EX31_RS17700 0.68 +0.4 93,258 + EX31_RS17700 0.71 -0.8 93,258 + EX31_RS17700 0.71 +0.0 93,259 - EX31_RS17700 0.71 -1.0 93,385 - EX31_RS17700 0.75 +1.7 93,485 - EX31_RS17700 0.78 +0.5 93,574 - EX31_RS17700 0.81 +0.7 93,643 - EX31_RS17700 0.83 +0.9 93,698 + EX31_RS17700 0.85 -0.1 93,698 + EX31_RS17700 0.85 -1.7 93,699 - EX31_RS17700 0.85 +0.7 93,900 - -1.0 93,900 - +1.4 93,931 - +0.3 94,040 + -1.9 94,063 + -0.2 94,064 - -1.2 94,064 - -0.6 94,075 - +0.9 94,075 - +0.5 94,233 + -0.7 94,233 + -1.9 94,233 + +0.0 94,234 - -0.5 94,234 - -0.3 94,252 - +0.6 94,252 - +0.3 94,263 - +0.9 94,263 - +0.2 94,267 + EX31_RS17705 0.10 +1.4 94,397 + EX31_RS17705 0.22 +0.3 94,398 - EX31_RS17705 0.22 +1.2 94,454 + EX31_RS17705 0.27 +1.7 94,545 + EX31_RS17705 0.35 +0.5 94,546 - EX31_RS17705 0.35 -0.2 94,551 + EX31_RS17705 0.35 -1.0 94,552 - EX31_RS17705 0.35 +0.5 94,553 + EX31_RS17705 0.35 +1.5 94,553 + EX31_RS17705 0.35 +1.1 94,553 + EX31_RS17705 0.35 +0.8 94,553 + EX31_RS17705 0.35 -1.6 94,553 + EX31_RS17705 0.35 -0.1 94,554 - EX31_RS17705 0.35 -0.1 94,554 - EX31_RS17705 0.35 -0.4 94,554 - EX31_RS17705 0.35 +0.1 94,554 - EX31_RS17705 0.35 +0.9 94,554 - EX31_RS17705 0.35 +1.1 94,554 - EX31_RS17705 0.35 -0.5 94,556 + EX31_RS17705 0.36 -1.2 94,556 + EX31_RS17705 0.36 +0.2 94,556 + EX31_RS17705 0.36 -0.1 94,854 + EX31_RS17705 0.62 +0.6 94,855 - EX31_RS17705 0.62 -0.6 94,855 - EX31_RS17705 0.62 +0.0 94,855 - EX31_RS17705 0.62 -0.5 94,863 - EX31_RS17705 0.62 -0.8 94,863 - EX31_RS17705 0.62 -1.9 94,965 - EX31_RS17705 0.71 +0.4 95,068 - EX31_RS17705 0.80 -0.3 95,068 - EX31_RS17705 0.80 +1.2 95,282 + -0.5 95,283 - -0.2 95,283 - +0.7 95,320 - -0.8 95,352 + EX31_RS17710 0.21 -0.1 95,353 - EX31_RS17710 0.21 -0.1 95,432 + EX31_RS17710 0.69 -0.0 95,432 + EX31_RS17710 0.69 -0.2 95,433 - EX31_RS17710 0.70 -1.2 95,433 - EX31_RS17710 0.70 +0.1 95,433 - EX31_RS17710 0.70 -0.8 95,474 - -0.4 95,540 - +0.8 95,558 + +0.4 95,558 + +0.2 95,559 - -0.7 95,559 - -0.4 95,604 + +1.0 95,605 - -0.4 95,605 - -1.0 95,639 + -0.6 95,640 - -0.2 95,755 + EX31_RS17715 0.17 +0.8 95,876 - EX31_RS17715 0.32 -1.3 95,886 + EX31_RS17715 0.33 -0.6 95,886 + EX31_RS17715 0.33 -0.7 95,886 + EX31_RS17715 0.33 +0.4 95,886 + EX31_RS17715 0.33 -0.9 95,886 + EX31_RS17715 0.33 +0.7 95,886 + EX31_RS17715 0.33 +2.2 95,886 + EX31_RS17715 0.33 +2.1 95,886 + EX31_RS17715 0.33 +0.3 95,886 + EX31_RS17715 0.33 -1.2 95,887 - EX31_RS17715 0.34 +0.3 95,887 - EX31_RS17715 0.34 -0.8 95,887 - EX31_RS17715 0.34 -0.6 95,887 - EX31_RS17715 0.34 -0.1 95,887 - EX31_RS17715 0.34 -0.2 95,887 - EX31_RS17715 0.34 +0.2 95,887 - EX31_RS17715 0.34 +0.3 95,897 - EX31_RS17715 0.35 -3.1 96,095 + EX31_RS17715 0.60 -1.4 96,163 + EX31_RS17715 0.69 -0.6 96,163 + EX31_RS17715 0.69 +0.5 96,164 - EX31_RS17715 0.69 +1.4 96,165 + EX31_RS17715 0.69 -0.4 96,165 + EX31_RS17715 0.69 -0.2 96,165 + EX31_RS17715 0.69 -0.6 96,165 + EX31_RS17715 0.69 -0.5 96,165 + EX31_RS17715 0.69 -0.2 96,165 + EX31_RS17715 0.69 +0.2 96,166 - EX31_RS17715 0.69 +0.8 96,166 - EX31_RS17715 0.69 -0.7 96,166 - EX31_RS17715 0.69 -0.4 96,171 + EX31_RS17715 0.70 -0.2 96,172 - EX31_RS17715 0.70 -1.3 96,178 + EX31_RS17715 0.71 +1.1 96,178 + EX31_RS17715 0.71 -0.5 96,178 + EX31_RS17715 0.71 +0.2 96,179 - EX31_RS17715 0.71 +0.8 96,179 - EX31_RS17715 0.71 -0.4 96,179 - EX31_RS17715 0.71 +0.5 96,224 - EX31_RS17715 0.76 +0.1
Or see this region's nucleotide sequence