Strain Fitness in Rahnella sp. WP5 around EX31_RS10655

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS10650 and EX31_RS10655 are separated by 14 nucleotidesEX31_RS10655 and EX31_RS10660 are separated by 98 nucleotides EX31_RS10650: EX31_RS10650 - lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein, at 45,352 to 46,662 _RS10650 EX31_RS10655: EX31_RS10655 - GNAT family N-acetyltransferase, at 46,677 to 49,061 _RS10655 EX31_RS10660: EX31_RS10660 - MFS transporter, at 49,160 to 50,380 _RS10660 Position (kb) 46 47 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 45.802 kb on + strand, within EX31_RS10650at 45.979 kb on + strand, within EX31_RS10650at 45.980 kb on - strand, within EX31_RS10650at 46.012 kb on + strand, within EX31_RS10650at 46.165 kb on + strand, within EX31_RS10650at 46.165 kb on + strand, within EX31_RS10650at 46.165 kb on + strand, within EX31_RS10650at 46.166 kb on - strand, within EX31_RS10650at 46.166 kb on - strand, within EX31_RS10650at 46.168 kb on - strand, within EX31_RS10650at 46.177 kb on - strand, within EX31_RS10650at 46.201 kb on + strand, within EX31_RS10650at 46.214 kb on - strand, within EX31_RS10650at 46.214 kb on - strand, within EX31_RS10650at 46.214 kb on - strand, within EX31_RS10650at 46.252 kb on + strand, within EX31_RS10650at 46.254 kb on + strand, within EX31_RS10650at 46.255 kb on - strand, within EX31_RS10650at 46.255 kb on - strand, within EX31_RS10650at 46.414 kb on + strand, within EX31_RS10650at 46.414 kb on + strand, within EX31_RS10650at 46.415 kb on - strand, within EX31_RS10650at 46.415 kb on - strand, within EX31_RS10650at 46.516 kb on - strand, within EX31_RS10650at 46.571 kb on + strandat 46.571 kb on + strandat 46.661 kb on - strandat 46.673 kb on - strandat 46.774 kb on + strandat 46.774 kb on + strandat 46.775 kb on - strandat 46.827 kb on - strandat 46.827 kb on - strandat 46.962 kb on + strand, within EX31_RS10655at 46.962 kb on + strand, within EX31_RS10655at 46.962 kb on + strand, within EX31_RS10655at 46.963 kb on - strand, within EX31_RS10655at 46.965 kb on + strand, within EX31_RS10655at 46.965 kb on + strand, within EX31_RS10655at 46.966 kb on - strand, within EX31_RS10655at 46.966 kb on - strand, within EX31_RS10655at 46.997 kb on + strand, within EX31_RS10655at 46.997 kb on + strand, within EX31_RS10655at 46.997 kb on + strand, within EX31_RS10655at 46.998 kb on - strand, within EX31_RS10655at 47.068 kb on - strand, within EX31_RS10655at 47.121 kb on - strand, within EX31_RS10655at 47.189 kb on + strand, within EX31_RS10655at 47.189 kb on + strand, within EX31_RS10655at 47.189 kb on + strand, within EX31_RS10655at 47.189 kb on + strand, within EX31_RS10655at 47.190 kb on - strand, within EX31_RS10655at 47.336 kb on + strand, within EX31_RS10655at 47.336 kb on + strand, within EX31_RS10655at 47.337 kb on - strand, within EX31_RS10655at 47.440 kb on + strand, within EX31_RS10655at 47.580 kb on - strand, within EX31_RS10655at 47.604 kb on + strand, within EX31_RS10655at 47.605 kb on - strand, within EX31_RS10655at 47.605 kb on - strand, within EX31_RS10655at 47.632 kb on - strand, within EX31_RS10655at 47.872 kb on + strand, within EX31_RS10655at 47.873 kb on - strand, within EX31_RS10655at 47.967 kb on + strand, within EX31_RS10655at 47.970 kb on + strand, within EX31_RS10655at 48.010 kb on + strand, within EX31_RS10655at 48.074 kb on + strand, within EX31_RS10655at 48.075 kb on - strand, within EX31_RS10655at 48.075 kb on - strand, within EX31_RS10655at 48.075 kb on - strand, within EX31_RS10655at 48.075 kb on - strand, within EX31_RS10655at 48.108 kb on + strand, within EX31_RS10655at 48.108 kb on + strand, within EX31_RS10655at 48.108 kb on + strand, within EX31_RS10655at 48.109 kb on - strand, within EX31_RS10655at 48.109 kb on - strand, within EX31_RS10655at 48.109 kb on - strand, within EX31_RS10655at 48.109 kb on - strand, within EX31_RS10655at 48.135 kb on + strand, within EX31_RS10655at 48.141 kb on - strand, within EX31_RS10655at 48.192 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.195 kb on + strand, within EX31_RS10655at 48.196 kb on - strand, within EX31_RS10655at 48.196 kb on - strand, within EX31_RS10655at 48.196 kb on - strand, within EX31_RS10655at 48.196 kb on - strand, within EX31_RS10655at 48.196 kb on - strand, within EX31_RS10655at 48.196 kb on - strand, within EX31_RS10655at 48.255 kb on + strand, within EX31_RS10655at 48.256 kb on - strand, within EX31_RS10655at 48.256 kb on - strand, within EX31_RS10655at 48.352 kb on - strand, within EX31_RS10655at 48.522 kb on + strand, within EX31_RS10655at 48.534 kb on + strand, within EX31_RS10655at 48.562 kb on - strand, within EX31_RS10655at 48.562 kb on - strand, within EX31_RS10655at 48.776 kb on - strand, within EX31_RS10655at 48.785 kb on + strand, within EX31_RS10655at 48.929 kb on + strandat 49.044 kb on + strandat 49.045 kb on - strandat 49.100 kb on + strandat 49.104 kb on - strandat 49.139 kb on - strandat 49.153 kb on + strandat 49.154 kb on - strandat 49.159 kb on + strandat 49.247 kb on + strandat 49.247 kb on + strandat 49.247 kb on + strandat 49.247 kb on + strandat 49.248 kb on - strandat 49.248 kb on - strandat 49.248 kb on - strandat 49.248 kb on - strandat 49.783 kb on - strand, within EX31_RS10660at 49.891 kb on - strand, within EX31_RS10660at 49.894 kb on - strand, within EX31_RS10660at 49.929 kb on - strand, within EX31_RS10660at 50.043 kb on + strand, within EX31_RS10660at 50.044 kb on - strand, within EX31_RS10660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
45,802 + EX31_RS10650 0.34 +0.5
45,979 + EX31_RS10650 0.48 +0.2
45,980 - EX31_RS10650 0.48 -1.1
46,012 + EX31_RS10650 0.50 +0.9
46,165 + EX31_RS10650 0.62 -0.5
46,165 + EX31_RS10650 0.62 -0.1
46,165 + EX31_RS10650 0.62 +0.7
46,166 - EX31_RS10650 0.62 +1.3
46,166 - EX31_RS10650 0.62 -1.7
46,168 - EX31_RS10650 0.62 -0.1
46,177 - EX31_RS10650 0.63 -1.1
46,201 + EX31_RS10650 0.65 +1.5
46,214 - EX31_RS10650 0.66 +1.3
46,214 - EX31_RS10650 0.66 -1.9
46,214 - EX31_RS10650 0.66 +0.6
46,252 + EX31_RS10650 0.69 +0.4
46,254 + EX31_RS10650 0.69 +1.1
46,255 - EX31_RS10650 0.69 -0.8
46,255 - EX31_RS10650 0.69 -1.4
46,414 + EX31_RS10650 0.81 +0.9
46,414 + EX31_RS10650 0.81 -0.4
46,415 - EX31_RS10650 0.81 -0.3
46,415 - EX31_RS10650 0.81 -0.4
46,516 - EX31_RS10650 0.89 +1.0
46,571 + +0.8
46,571 + +1.3
46,661 - +0.3
46,673 - -1.6
46,774 + +0.7
46,774 + +0.4
46,775 - -0.2
46,827 - +0.5
46,827 - +0.1
46,962 + EX31_RS10655 0.12 -0.0
46,962 + EX31_RS10655 0.12 +0.8
46,962 + EX31_RS10655 0.12 -0.9
46,963 - EX31_RS10655 0.12 -0.9
46,965 + EX31_RS10655 0.12 -0.8
46,965 + EX31_RS10655 0.12 -0.2
46,966 - EX31_RS10655 0.12 +2.5
46,966 - EX31_RS10655 0.12 +0.2
46,997 + EX31_RS10655 0.13 +1.3
46,997 + EX31_RS10655 0.13 +0.3
46,997 + EX31_RS10655 0.13 +0.1
46,998 - EX31_RS10655 0.13 +0.4
47,068 - EX31_RS10655 0.16 +1.2
47,121 - EX31_RS10655 0.19 +0.0
47,189 + EX31_RS10655 0.21 -0.1
47,189 + EX31_RS10655 0.21 +1.5
47,189 + EX31_RS10655 0.21 -1.0
47,189 + EX31_RS10655 0.21 +0.1
47,190 - EX31_RS10655 0.22 -0.2
47,336 + EX31_RS10655 0.28 -0.1
47,336 + EX31_RS10655 0.28 +0.4
47,337 - EX31_RS10655 0.28 +0.6
47,440 + EX31_RS10655 0.32 +0.7
47,580 - EX31_RS10655 0.38 +0.4
47,604 + EX31_RS10655 0.39 -1.2
47,605 - EX31_RS10655 0.39 +0.2
47,605 - EX31_RS10655 0.39 +0.2
47,632 - EX31_RS10655 0.40 +1.5
47,872 + EX31_RS10655 0.50 -1.5
47,873 - EX31_RS10655 0.50 -0.2
47,967 + EX31_RS10655 0.54 -0.9
47,970 + EX31_RS10655 0.54 +0.4
48,010 + EX31_RS10655 0.56 -0.7
48,074 + EX31_RS10655 0.59 +0.9
48,075 - EX31_RS10655 0.59 +0.1
48,075 - EX31_RS10655 0.59 +0.3
48,075 - EX31_RS10655 0.59 -0.7
48,075 - EX31_RS10655 0.59 -0.2
48,108 + EX31_RS10655 0.60 +0.1
48,108 + EX31_RS10655 0.60 +1.2
48,108 + EX31_RS10655 0.60 -0.5
48,109 - EX31_RS10655 0.60 -1.4
48,109 - EX31_RS10655 0.60 -2.6
48,109 - EX31_RS10655 0.60 +0.9
48,109 - EX31_RS10655 0.60 +0.6
48,135 + EX31_RS10655 0.61 -0.0
48,141 - EX31_RS10655 0.61 +0.9
48,192 + EX31_RS10655 0.64 +0.7
48,195 + EX31_RS10655 0.64 +0.7
48,195 + EX31_RS10655 0.64 -1.6
48,195 + EX31_RS10655 0.64 -0.4
48,195 + EX31_RS10655 0.64 +0.3
48,195 + EX31_RS10655 0.64 -1.4
48,195 + EX31_RS10655 0.64 -0.5
48,195 + EX31_RS10655 0.64 -1.7
48,195 + EX31_RS10655 0.64 +0.5
48,195 + EX31_RS10655 0.64 -0.2
48,196 - EX31_RS10655 0.64 +0.1
48,196 - EX31_RS10655 0.64 +0.2
48,196 - EX31_RS10655 0.64 +0.7
48,196 - EX31_RS10655 0.64 +0.9
48,196 - EX31_RS10655 0.64 +1.1
48,196 - EX31_RS10655 0.64 +0.2
48,255 + EX31_RS10655 0.66 -0.2
48,256 - EX31_RS10655 0.66 -1.0
48,256 - EX31_RS10655 0.66 +0.3
48,352 - EX31_RS10655 0.70 -1.0
48,522 + EX31_RS10655 0.77 -0.4
48,534 + EX31_RS10655 0.78 -0.5
48,562 - EX31_RS10655 0.79 -1.5
48,562 - EX31_RS10655 0.79 +0.8
48,776 - EX31_RS10655 0.88 -0.2
48,785 + EX31_RS10655 0.88 +0.7
48,929 + +0.1
49,044 + -0.6
49,045 - -0.6
49,100 + +0.9
49,104 - -0.3
49,139 - -0.1
49,153 + -0.4
49,154 - -2.8
49,159 + -1.0
49,247 + -1.4
49,247 + -0.2
49,247 + -0.1
49,247 + -1.3
49,248 - -0.3
49,248 - +0.2
49,248 - -0.1
49,248 - -0.1
49,783 - EX31_RS10660 0.51 -0.0
49,891 - EX31_RS10660 0.60 +0.1
49,894 - EX31_RS10660 0.60 -2.4
49,929 - EX31_RS10660 0.63 -1.9
50,043 + EX31_RS10660 0.72 +0.2
50,044 - EX31_RS10660 0.72 -0.2

Or see this region's nucleotide sequence