Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10645 and EX31_RS10650 are separated by 13 nucleotides EX31_RS10650 and EX31_RS10655 are separated by 14 nucleotides
EX31_RS10645: EX31_RS10645 - aspartate aminotransferase family protein, at 43,770 to 45,338
_RS10645
EX31_RS10650: EX31_RS10650 - lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein, at 45,352 to 46,662
_RS10650
EX31_RS10655: EX31_RS10655 - GNAT family N-acetyltransferase, at 46,677 to 49,061
_RS10655
Position (kb) 45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2 at 44.367 kb on + strand, within EX31_RS10645 at 44.367 kb on + strand, within EX31_RS10645 at 44.368 kb on - strand, within EX31_RS10645 at 44.368 kb on - strand, within EX31_RS10645 at 44.368 kb on - strand, within EX31_RS10645 at 44.466 kb on + strand, within EX31_RS10645 at 45.062 kb on + strand, within EX31_RS10645 at 45.229 kb on + strand at 45.379 kb on + strand at 45.380 kb on - strand at 45.625 kb on + strand, within EX31_RS10650 at 45.625 kb on + strand, within EX31_RS10650 at 45.670 kb on + strand, within EX31_RS10650 at 45.802 kb on + strand, within EX31_RS10650 at 45.979 kb on + strand, within EX31_RS10650 at 45.980 kb on - strand, within EX31_RS10650 at 46.012 kb on + strand, within EX31_RS10650 at 46.165 kb on + strand, within EX31_RS10650 at 46.165 kb on + strand, within EX31_RS10650 at 46.165 kb on + strand, within EX31_RS10650 at 46.166 kb on - strand, within EX31_RS10650 at 46.166 kb on - strand, within EX31_RS10650 at 46.168 kb on - strand, within EX31_RS10650 at 46.177 kb on - strand, within EX31_RS10650 at 46.201 kb on + strand, within EX31_RS10650 at 46.214 kb on - strand, within EX31_RS10650 at 46.214 kb on - strand, within EX31_RS10650 at 46.214 kb on - strand, within EX31_RS10650 at 46.252 kb on + strand, within EX31_RS10650 at 46.254 kb on + strand, within EX31_RS10650 at 46.255 kb on - strand, within EX31_RS10650 at 46.255 kb on - strand, within EX31_RS10650 at 46.414 kb on + strand, within EX31_RS10650 at 46.414 kb on + strand, within EX31_RS10650 at 46.415 kb on - strand, within EX31_RS10650 at 46.415 kb on - strand, within EX31_RS10650 at 46.516 kb on - strand, within EX31_RS10650 at 46.571 kb on + strand at 46.571 kb on + strand at 46.661 kb on - strand at 46.673 kb on - strand at 46.774 kb on + strand at 46.774 kb on + strand at 46.775 kb on - strand at 46.827 kb on - strand at 46.827 kb on - strand at 46.962 kb on + strand, within EX31_RS10655 at 46.962 kb on + strand, within EX31_RS10655 at 46.962 kb on + strand, within EX31_RS10655 at 46.963 kb on - strand, within EX31_RS10655 at 46.965 kb on + strand, within EX31_RS10655 at 46.965 kb on + strand, within EX31_RS10655 at 46.966 kb on - strand, within EX31_RS10655 at 46.966 kb on - strand, within EX31_RS10655 at 46.997 kb on + strand, within EX31_RS10655 at 46.997 kb on + strand, within EX31_RS10655 at 46.997 kb on + strand, within EX31_RS10655 at 46.998 kb on - strand, within EX31_RS10655 at 47.068 kb on - strand, within EX31_RS10655 at 47.121 kb on - strand, within EX31_RS10655 at 47.189 kb on + strand, within EX31_RS10655 at 47.189 kb on + strand, within EX31_RS10655 at 47.189 kb on + strand, within EX31_RS10655 at 47.189 kb on + strand, within EX31_RS10655 at 47.190 kb on - strand, within EX31_RS10655 at 47.336 kb on + strand, within EX31_RS10655 at 47.336 kb on + strand, within EX31_RS10655 at 47.337 kb on - strand, within EX31_RS10655 at 47.440 kb on + strand, within EX31_RS10655 at 47.580 kb on - strand, within EX31_RS10655 at 47.604 kb on + strand, within EX31_RS10655 at 47.605 kb on - strand, within EX31_RS10655 at 47.605 kb on - strand, within EX31_RS10655 at 47.632 kb on - strand, within EX31_RS10655
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 44,367 + EX31_RS10645 0.38 -2.0 44,367 + EX31_RS10645 0.38 +0.2 44,368 - EX31_RS10645 0.38 +1.2 44,368 - EX31_RS10645 0.38 +0.5 44,368 - EX31_RS10645 0.38 +0.9 44,466 + EX31_RS10645 0.44 +1.6 45,062 + EX31_RS10645 0.82 -0.0 45,229 + +0.6 45,379 + +0.6 45,380 - +0.7 45,625 + EX31_RS10650 0.21 -0.9 45,625 + EX31_RS10650 0.21 -0.2 45,670 + EX31_RS10650 0.24 -0.7 45,802 + EX31_RS10650 0.34 +0.5 45,979 + EX31_RS10650 0.48 +0.2 45,980 - EX31_RS10650 0.48 -1.1 46,012 + EX31_RS10650 0.50 +0.9 46,165 + EX31_RS10650 0.62 -0.5 46,165 + EX31_RS10650 0.62 -0.1 46,165 + EX31_RS10650 0.62 +0.7 46,166 - EX31_RS10650 0.62 +1.3 46,166 - EX31_RS10650 0.62 -1.7 46,168 - EX31_RS10650 0.62 -0.1 46,177 - EX31_RS10650 0.63 -1.1 46,201 + EX31_RS10650 0.65 +1.5 46,214 - EX31_RS10650 0.66 +1.3 46,214 - EX31_RS10650 0.66 -1.9 46,214 - EX31_RS10650 0.66 +0.6 46,252 + EX31_RS10650 0.69 +0.4 46,254 + EX31_RS10650 0.69 +1.1 46,255 - EX31_RS10650 0.69 -0.8 46,255 - EX31_RS10650 0.69 -1.4 46,414 + EX31_RS10650 0.81 +0.9 46,414 + EX31_RS10650 0.81 -0.4 46,415 - EX31_RS10650 0.81 -0.3 46,415 - EX31_RS10650 0.81 -0.4 46,516 - EX31_RS10650 0.89 +1.0 46,571 + +0.8 46,571 + +1.3 46,661 - +0.3 46,673 - -1.6 46,774 + +0.7 46,774 + +0.4 46,775 - -0.2 46,827 - +0.5 46,827 - +0.1 46,962 + EX31_RS10655 0.12 -0.0 46,962 + EX31_RS10655 0.12 +0.8 46,962 + EX31_RS10655 0.12 -0.9 46,963 - EX31_RS10655 0.12 -0.9 46,965 + EX31_RS10655 0.12 -0.8 46,965 + EX31_RS10655 0.12 -0.2 46,966 - EX31_RS10655 0.12 +2.5 46,966 - EX31_RS10655 0.12 +0.2 46,997 + EX31_RS10655 0.13 +1.3 46,997 + EX31_RS10655 0.13 +0.3 46,997 + EX31_RS10655 0.13 +0.1 46,998 - EX31_RS10655 0.13 +0.4 47,068 - EX31_RS10655 0.16 +1.2 47,121 - EX31_RS10655 0.19 +0.0 47,189 + EX31_RS10655 0.21 -0.1 47,189 + EX31_RS10655 0.21 +1.5 47,189 + EX31_RS10655 0.21 -1.0 47,189 + EX31_RS10655 0.21 +0.1 47,190 - EX31_RS10655 0.22 -0.2 47,336 + EX31_RS10655 0.28 -0.1 47,336 + EX31_RS10655 0.28 +0.4 47,337 - EX31_RS10655 0.28 +0.6 47,440 + EX31_RS10655 0.32 +0.7 47,580 - EX31_RS10655 0.38 +0.4 47,604 + EX31_RS10655 0.39 -1.2 47,605 - EX31_RS10655 0.39 +0.2 47,605 - EX31_RS10655 0.39 +0.2 47,632 - EX31_RS10655 0.40 +1.5
Or see this region's nucleotide sequence