Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06390 and EX31_RS06395 are separated by 257 nucleotides EX31_RS06395 and EX31_RS06400 overlap by 4 nucleotides
EX31_RS06390: EX31_RS06390 - transporter, at 40,929 to 42,728
_RS06390
EX31_RS06395: EX31_RS06395 - alginate lyase family protein, at 42,986 to 44,329
_RS06395
EX31_RS06400: EX31_RS06400 - chondroitin lyase, at 44,326 to 46,464
_RS06400
Position (kb) 42
43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 42.060 kb on - strand, within EX31_RS06390 at 42.061 kb on + strand, within EX31_RS06390 at 42.062 kb on - strand, within EX31_RS06390 at 42.062 kb on - strand, within EX31_RS06390 at 42.062 kb on - strand, within EX31_RS06390 at 42.138 kb on - strand, within EX31_RS06390 at 42.142 kb on - strand, within EX31_RS06390 at 42.170 kb on + strand, within EX31_RS06390 at 42.330 kb on + strand, within EX31_RS06390 at 42.670 kb on + strand at 42.677 kb on + strand at 42.677 kb on + strand at 42.687 kb on + strand at 42.688 kb on - strand at 42.788 kb on - strand at 42.873 kb on + strand at 42.876 kb on + strand at 42.876 kb on + strand at 42.876 kb on + strand at 42.877 kb on - strand at 42.877 kb on - strand at 42.877 kb on - strand at 42.886 kb on + strand at 42.887 kb on - strand at 42.983 kb on + strand at 42.983 kb on + strand at 42.983 kb on + strand at 42.983 kb on + strand at 42.983 kb on + strand at 42.983 kb on + strand at 42.984 kb on - strand at 42.984 kb on - strand at 42.984 kb on - strand at 42.984 kb on - strand at 42.994 kb on - strand at 43.268 kb on + strand, within EX31_RS06395 at 43.268 kb on + strand, within EX31_RS06395 at 43.268 kb on + strand, within EX31_RS06395 at 43.269 kb on - strand, within EX31_RS06395 at 43.348 kb on - strand, within EX31_RS06395 at 43.348 kb on - strand, within EX31_RS06395 at 43.433 kb on + strand, within EX31_RS06395 at 43.480 kb on - strand, within EX31_RS06395 at 43.530 kb on - strand, within EX31_RS06395 at 43.565 kb on - strand, within EX31_RS06395 at 43.735 kb on + strand, within EX31_RS06395 at 43.760 kb on + strand, within EX31_RS06395 at 43.760 kb on + strand, within EX31_RS06395 at 43.760 kb on + strand, within EX31_RS06395 at 43.791 kb on - strand, within EX31_RS06395 at 43.791 kb on - strand, within EX31_RS06395 at 43.791 kb on - strand, within EX31_RS06395 at 43.916 kb on + strand, within EX31_RS06395 at 43.916 kb on + strand, within EX31_RS06395 at 43.917 kb on - strand, within EX31_RS06395 at 44.066 kb on + strand, within EX31_RS06395 at 44.066 kb on + strand, within EX31_RS06395 at 44.067 kb on - strand, within EX31_RS06395 at 44.153 kb on + strand, within EX31_RS06395 at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.214 kb on - strand at 44.294 kb on + strand at 44.294 kb on + strand at 44.294 kb on + strand at 44.294 kb on + strand at 44.294 kb on + strand at 44.294 kb on + strand at 44.295 kb on - strand at 44.295 kb on - strand at 44.295 kb on - strand at 44.323 kb on + strand at 44.324 kb on - strand at 44.324 kb on - strand at 44.324 kb on - strand at 44.352 kb on - strand at 44.388 kb on + strand at 44.521 kb on + strand at 44.522 kb on - strand at 44.522 kb on - strand at 44.697 kb on + strand, within EX31_RS06400 at 44.697 kb on + strand, within EX31_RS06400 at 44.698 kb on - strand, within EX31_RS06400 at 44.710 kb on + strand, within EX31_RS06400 at 44.725 kb on + strand, within EX31_RS06400 at 44.912 kb on + strand, within EX31_RS06400 at 44.924 kb on + strand, within EX31_RS06400 at 44.924 kb on + strand, within EX31_RS06400 at 44.924 kb on + strand, within EX31_RS06400 at 44.925 kb on - strand, within EX31_RS06400 at 44.925 kb on - strand, within EX31_RS06400 at 44.925 kb on - strand, within EX31_RS06400 at 44.926 kb on + strand, within EX31_RS06400 at 44.927 kb on - strand, within EX31_RS06400 at 44.927 kb on - strand, within EX31_RS06400 at 44.999 kb on - strand, within EX31_RS06400 at 45.001 kb on + strand, within EX31_RS06400 at 45.001 kb on + strand, within EX31_RS06400 at 45.002 kb on - strand, within EX31_RS06400 at 45.002 kb on - strand, within EX31_RS06400 at 45.003 kb on + strand, within EX31_RS06400 at 45.016 kb on + strand, within EX31_RS06400 at 45.115 kb on - strand, within EX31_RS06400
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 42,060 - EX31_RS06390 0.63 +0.3 42,061 + EX31_RS06390 0.63 +0.6 42,062 - EX31_RS06390 0.63 +0.5 42,062 - EX31_RS06390 0.63 +0.4 42,062 - EX31_RS06390 0.63 -0.3 42,138 - EX31_RS06390 0.67 -0.4 42,142 - EX31_RS06390 0.67 +0.1 42,170 + EX31_RS06390 0.69 +0.8 42,330 + EX31_RS06390 0.78 -0.3 42,670 + -1.0 42,677 + +0.4 42,677 + +0.3 42,687 + +0.2 42,688 - +0.3 42,788 - +1.5 42,873 + -0.8 42,876 + +0.7 42,876 + -3.0 42,876 + -2.2 42,877 - -1.1 42,877 - -0.3 42,877 - +0.4 42,886 + -1.5 42,887 - -0.2 42,983 + -0.5 42,983 + +0.2 42,983 + +1.3 42,983 + +0.3 42,983 + -0.2 42,983 + +0.2 42,984 - +2.1 42,984 - +0.7 42,984 - -0.1 42,984 - -0.3 42,994 - +0.5 43,268 + EX31_RS06395 0.21 +0.8 43,268 + EX31_RS06395 0.21 -0.8 43,268 + EX31_RS06395 0.21 +0.5 43,269 - EX31_RS06395 0.21 -0.8 43,348 - EX31_RS06395 0.27 -0.3 43,348 - EX31_RS06395 0.27 -0.7 43,433 + EX31_RS06395 0.33 -1.2 43,480 - EX31_RS06395 0.37 -0.5 43,530 - EX31_RS06395 0.40 -3.0 43,565 - EX31_RS06395 0.43 +0.9 43,735 + EX31_RS06395 0.56 -2.8 43,760 + EX31_RS06395 0.58 +1.8 43,760 + EX31_RS06395 0.58 -2.0 43,760 + EX31_RS06395 0.58 +1.1 43,791 - EX31_RS06395 0.60 +0.0 43,791 - EX31_RS06395 0.60 +1.4 43,791 - EX31_RS06395 0.60 -1.1 43,916 + EX31_RS06395 0.69 -0.6 43,916 + EX31_RS06395 0.69 -0.9 43,917 - EX31_RS06395 0.69 -0.8 44,066 + EX31_RS06395 0.80 +1.2 44,066 + EX31_RS06395 0.80 -0.4 44,067 - EX31_RS06395 0.80 -0.4 44,153 + EX31_RS06395 0.87 -0.5 44,213 + -0.6 44,213 + +1.0 44,213 + +1.3 44,213 + -0.1 44,213 + -1.0 44,213 + -1.8 44,213 + -0.6 44,213 + -0.2 44,213 + +0.7 44,213 + -0.7 44,214 - +0.4 44,294 + -0.7 44,294 + +0.4 44,294 + +0.0 44,294 + -1.6 44,294 + -0.2 44,294 + -0.4 44,295 - -0.2 44,295 - -0.9 44,295 - -0.7 44,323 + -0.8 44,324 - +0.9 44,324 - -0.2 44,324 - -0.4 44,352 - -0.2 44,388 + -0.9 44,521 + -0.5 44,522 - -1.3 44,522 - -0.3 44,697 + EX31_RS06400 0.17 +1.4 44,697 + EX31_RS06400 0.17 +0.9 44,698 - EX31_RS06400 0.17 -1.0 44,710 + EX31_RS06400 0.18 -0.5 44,725 + EX31_RS06400 0.19 +0.5 44,912 + EX31_RS06400 0.27 -0.9 44,924 + EX31_RS06400 0.28 +1.2 44,924 + EX31_RS06400 0.28 +0.8 44,924 + EX31_RS06400 0.28 -0.4 44,925 - EX31_RS06400 0.28 +1.2 44,925 - EX31_RS06400 0.28 -0.8 44,925 - EX31_RS06400 0.28 +0.1 44,926 + EX31_RS06400 0.28 -0.8 44,927 - EX31_RS06400 0.28 -1.2 44,927 - EX31_RS06400 0.28 +0.5 44,999 - EX31_RS06400 0.31 -0.5 45,001 + EX31_RS06400 0.32 +0.2 45,001 + EX31_RS06400 0.32 +0.1 45,002 - EX31_RS06400 0.32 -0.2 45,002 - EX31_RS06400 0.32 -0.9 45,003 + EX31_RS06400 0.32 +0.7 45,016 + EX31_RS06400 0.32 +1.4 45,115 - EX31_RS06400 0.37 +1.4
Or see this region's nucleotide sequence