Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00730 and EX31_RS00735 are separated by 655 nucleotides EX31_RS00735 and EX31_RS00740 overlap by 4 nucleotides
EX31_RS00730: EX31_RS00730 - aspartate aminotransferase family protein, at 156,111 to 157,583
_RS00730
EX31_RS00735: EX31_RS00735 - mechanosensitive ion channel family protein, at 158,239 to 159,315
_RS00735
EX31_RS00740: EX31_RS00740 - malto-oligosyltrehalose synthase, at 159,312 to 161,822
_RS00740
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.239 kb on + strand, within EX31_RS00730 at 157.290 kb on + strand, within EX31_RS00730 at 157.290 kb on + strand, within EX31_RS00730 at 157.291 kb on - strand, within EX31_RS00730 at 157.469 kb on + strand at 157.581 kb on + strand at 157.581 kb on + strand at 157.581 kb on + strand at 157.582 kb on - strand at 157.589 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.599 kb on + strand at 157.600 kb on - strand at 157.600 kb on - strand at 157.600 kb on - strand at 157.600 kb on - strand at 157.641 kb on - strand at 157.648 kb on + strand at 157.649 kb on - strand at 157.698 kb on - strand at 157.743 kb on - strand at 157.743 kb on - strand at 157.747 kb on - strand at 157.752 kb on + strand at 157.753 kb on - strand at 157.762 kb on - strand at 157.792 kb on - strand at 157.792 kb on - strand at 157.792 kb on - strand at 157.792 kb on - strand at 157.792 kb on - strand at 157.797 kb on + strand at 157.797 kb on + strand at 157.856 kb on - strand at 157.994 kb on - strand at 157.994 kb on - strand at 157.994 kb on - strand at 157.994 kb on - strand at 157.994 kb on - strand at 157.994 kb on - strand at 158.021 kb on - strand at 158.080 kb on - strand at 158.080 kb on - strand at 158.095 kb on + strand at 158.098 kb on + strand at 158.099 kb on - strand at 158.100 kb on + strand at 158.100 kb on + strand at 158.135 kb on + strand at 158.136 kb on - strand at 158.206 kb on - strand at 158.223 kb on - strand at 158.297 kb on + strand at 158.335 kb on + strand at 158.335 kb on + strand at 158.335 kb on + strand at 158.336 kb on - strand at 158.378 kb on + strand, within EX31_RS00735 at 158.378 kb on + strand, within EX31_RS00735 at 158.455 kb on - strand, within EX31_RS00735 at 158.460 kb on - strand, within EX31_RS00735 at 158.604 kb on - strand, within EX31_RS00735 at 158.610 kb on + strand, within EX31_RS00735 at 158.610 kb on + strand, within EX31_RS00735 at 158.610 kb on + strand, within EX31_RS00735 at 158.613 kb on + strand, within EX31_RS00735 at 158.681 kb on + strand, within EX31_RS00735 at 158.819 kb on + strand, within EX31_RS00735 at 158.823 kb on + strand, within EX31_RS00735 at 158.824 kb on - strand, within EX31_RS00735 at 158.895 kb on + strand, within EX31_RS00735 at 158.983 kb on - strand, within EX31_RS00735 at 158.986 kb on + strand, within EX31_RS00735 at 158.987 kb on - strand, within EX31_RS00735 at 158.987 kb on - strand, within EX31_RS00735 at 159.077 kb on + strand, within EX31_RS00735 at 159.195 kb on + strand, within EX31_RS00735 at 159.196 kb on - strand, within EX31_RS00735 at 159.199 kb on + strand, within EX31_RS00735 at 159.200 kb on - strand, within EX31_RS00735 at 159.200 kb on - strand, within EX31_RS00735 at 159.222 kb on + strand at 159.231 kb on + strand at 159.279 kb on + strand at 159.279 kb on + strand at 159.289 kb on - strand at 159.313 kb on + strand at 159.373 kb on - strand at 159.373 kb on - strand at 159.373 kb on - strand at 159.389 kb on + strand at 159.590 kb on - strand, within EX31_RS00740 at 159.652 kb on + strand, within EX31_RS00740 at 159.653 kb on - strand, within EX31_RS00740 at 159.802 kb on + strand, within EX31_RS00740 at 159.802 kb on + strand, within EX31_RS00740 at 159.802 kb on + strand, within EX31_RS00740 at 159.802 kb on + strand, within EX31_RS00740 at 159.802 kb on + strand, within EX31_RS00740 at 159.875 kb on + strand, within EX31_RS00740 at 159.876 kb on - strand, within EX31_RS00740 at 159.912 kb on + strand, within EX31_RS00740 at 160.166 kb on + strand, within EX31_RS00740
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 157,239 + EX31_RS00730 0.77 +0.4 157,290 + EX31_RS00730 0.80 +0.8 157,290 + EX31_RS00730 0.80 -0.1 157,291 - EX31_RS00730 0.80 -0.2 157,469 + -0.3 157,581 + -0.9 157,581 + -0.2 157,581 + +1.2 157,582 - +0.5 157,589 + -0.6 157,599 + -0.3 157,599 + +0.8 157,599 + -0.4 157,599 + +0.4 157,599 + +0.2 157,599 + -0.2 157,599 + +0.1 157,599 + +0.6 157,599 + +0.3 157,599 + +0.6 157,599 + +0.5 157,599 + -0.7 157,599 + -0.4 157,599 + +0.2 157,599 + -0.6 157,599 + +0.3 157,599 + -0.5 157,599 + -0.9 157,599 + +1.8 157,599 + -0.7 157,599 + -0.8 157,599 + -0.6 157,599 + +0.2 157,600 - -0.3 157,600 - -1.1 157,600 - -1.8 157,600 - +1.5 157,641 - -0.1 157,648 + -0.9 157,649 - -0.4 157,698 - -0.5 157,743 - -0.5 157,743 - -1.1 157,747 - +1.1 157,752 + +0.8 157,753 - +0.4 157,762 - -0.3 157,792 - +0.7 157,792 - +0.3 157,792 - +0.4 157,792 - -0.1 157,792 - +0.7 157,797 + -0.1 157,797 + -1.1 157,856 - -1.4 157,994 - -0.6 157,994 - +0.1 157,994 - +0.1 157,994 - +0.1 157,994 - +0.7 157,994 - +0.9 158,021 - -0.2 158,080 - -0.4 158,080 - +0.8 158,095 + -0.2 158,098 + -0.0 158,099 - -0.5 158,100 + -0.7 158,100 + -0.3 158,135 + -0.1 158,136 - +0.5 158,206 - +1.8 158,223 - -1.5 158,297 + +1.4 158,335 + -0.0 158,335 + +0.4 158,335 + +0.2 158,336 - -0.2 158,378 + EX31_RS00735 0.13 -0.6 158,378 + EX31_RS00735 0.13 +0.1 158,455 - EX31_RS00735 0.20 -2.2 158,460 - EX31_RS00735 0.21 -1.5 158,604 - EX31_RS00735 0.34 -0.8 158,610 + EX31_RS00735 0.34 -2.4 158,610 + EX31_RS00735 0.34 -0.3 158,610 + EX31_RS00735 0.34 +0.1 158,613 + EX31_RS00735 0.35 -0.1 158,681 + EX31_RS00735 0.41 -0.2 158,819 + EX31_RS00735 0.54 -0.4 158,823 + EX31_RS00735 0.54 -0.2 158,824 - EX31_RS00735 0.54 -1.5 158,895 + EX31_RS00735 0.61 -1.1 158,983 - EX31_RS00735 0.69 -0.4 158,986 + EX31_RS00735 0.69 -0.5 158,987 - EX31_RS00735 0.69 -1.0 158,987 - EX31_RS00735 0.69 -0.2 159,077 + EX31_RS00735 0.78 +0.4 159,195 + EX31_RS00735 0.89 -0.4 159,196 - EX31_RS00735 0.89 -0.5 159,199 + EX31_RS00735 0.89 +0.8 159,200 - EX31_RS00735 0.89 +1.9 159,200 - EX31_RS00735 0.89 +0.0 159,222 + -0.9 159,231 + -1.2 159,279 + -1.2 159,279 + +1.6 159,289 - +2.4 159,313 + -1.2 159,373 - -0.8 159,373 - -1.1 159,373 - -0.5 159,389 + +0.7 159,590 - EX31_RS00740 0.11 -0.7 159,652 + EX31_RS00740 0.14 -1.1 159,653 - EX31_RS00740 0.14 -0.6 159,802 + EX31_RS00740 0.20 +0.2 159,802 + EX31_RS00740 0.20 +0.6 159,802 + EX31_RS00740 0.20 +0.7 159,802 + EX31_RS00740 0.20 +0.5 159,802 + EX31_RS00740 0.20 -0.1 159,875 + EX31_RS00740 0.22 +0.9 159,876 - EX31_RS00740 0.22 +0.9 159,912 + EX31_RS00740 0.24 +0.7 160,166 + EX31_RS00740 0.34 +0.4
Or see this region's nucleotide sequence