Strain Fitness in Rahnella sp. WP5 around EX31_RS00265

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS00260 and EX31_RS00265 are separated by 21 nucleotidesEX31_RS00265 and EX31_RS00270 are separated by 787 nucleotides EX31_RS00260: EX31_RS00260 - hypothetical protein, at 53,964 to 55,040 _RS00260 EX31_RS00265: EX31_RS00265 - alpha/beta hydrolase, at 55,062 to 55,820 _RS00265 EX31_RS00270: EX31_RS00270 - TonB-dependent receptor, at 56,608 to 58,761 _RS00270 Position (kb) 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 54.068 kb on + strandat 54.069 kb on - strandat 54.137 kb on + strand, within EX31_RS00260at 54.137 kb on + strand, within EX31_RS00260at 54.159 kb on + strand, within EX31_RS00260at 54.161 kb on + strand, within EX31_RS00260at 54.161 kb on + strand, within EX31_RS00260at 54.162 kb on - strand, within EX31_RS00260at 54.213 kb on + strand, within EX31_RS00260at 54.213 kb on + strand, within EX31_RS00260at 54.213 kb on + strand, within EX31_RS00260at 54.267 kb on - strand, within EX31_RS00260at 54.308 kb on + strand, within EX31_RS00260at 54.308 kb on + strand, within EX31_RS00260at 54.309 kb on - strand, within EX31_RS00260at 54.346 kb on + strand, within EX31_RS00260at 54.346 kb on + strand, within EX31_RS00260at 54.453 kb on + strand, within EX31_RS00260at 54.560 kb on + strand, within EX31_RS00260at 54.597 kb on + strand, within EX31_RS00260at 54.597 kb on + strand, within EX31_RS00260at 54.597 kb on + strand, within EX31_RS00260at 54.598 kb on - strand, within EX31_RS00260at 54.598 kb on - strand, within EX31_RS00260at 54.658 kb on + strand, within EX31_RS00260at 54.684 kb on + strand, within EX31_RS00260at 54.685 kb on - strand, within EX31_RS00260at 54.685 kb on - strand, within EX31_RS00260at 54.685 kb on - strand, within EX31_RS00260at 54.685 kb on - strand, within EX31_RS00260at 54.809 kb on + strand, within EX31_RS00260at 54.810 kb on - strand, within EX31_RS00260at 54.886 kb on + strand, within EX31_RS00260at 54.886 kb on + strand, within EX31_RS00260at 54.887 kb on - strand, within EX31_RS00260at 54.925 kb on + strand, within EX31_RS00260at 54.931 kb on - strand, within EX31_RS00260at 54.979 kb on + strandat 54.979 kb on + strandat 54.999 kb on + strandat 54.999 kb on + strandat 54.999 kb on + strandat 55.063 kb on + strandat 55.063 kb on + strandat 55.064 kb on - strandat 55.064 kb on - strandat 55.064 kb on - strandat 55.127 kb on - strandat 55.183 kb on + strand, within EX31_RS00265at 55.184 kb on - strand, within EX31_RS00265at 55.184 kb on - strand, within EX31_RS00265at 55.184 kb on - strand, within EX31_RS00265at 55.194 kb on + strand, within EX31_RS00265at 55.195 kb on - strand, within EX31_RS00265at 55.195 kb on - strand, within EX31_RS00265at 55.234 kb on + strand, within EX31_RS00265at 55.234 kb on + strand, within EX31_RS00265at 55.235 kb on - strand, within EX31_RS00265at 55.280 kb on + strand, within EX31_RS00265at 55.280 kb on + strand, within EX31_RS00265at 55.281 kb on - strand, within EX31_RS00265at 55.281 kb on - strand, within EX31_RS00265at 55.284 kb on + strand, within EX31_RS00265at 55.284 kb on + strand, within EX31_RS00265at 55.334 kb on + strand, within EX31_RS00265at 55.334 kb on + strand, within EX31_RS00265at 55.334 kb on + strand, within EX31_RS00265at 55.384 kb on + strand, within EX31_RS00265at 55.384 kb on + strand, within EX31_RS00265at 55.489 kb on + strand, within EX31_RS00265at 55.489 kb on + strand, within EX31_RS00265at 55.490 kb on - strand, within EX31_RS00265at 55.490 kb on - strand, within EX31_RS00265at 55.490 kb on - strand, within EX31_RS00265at 55.490 kb on - strand, within EX31_RS00265at 55.490 kb on - strand, within EX31_RS00265at 55.490 kb on - strand, within EX31_RS00265at 55.490 kb on - strand, within EX31_RS00265at 55.490 kb on - strand, within EX31_RS00265at 55.490 kb on - strand, within EX31_RS00265at 55.533 kb on - strand, within EX31_RS00265at 55.546 kb on + strand, within EX31_RS00265at 55.598 kb on + strand, within EX31_RS00265at 55.641 kb on + strand, within EX31_RS00265at 55.642 kb on - strand, within EX31_RS00265at 55.655 kb on + strand, within EX31_RS00265at 55.655 kb on + strand, within EX31_RS00265at 55.658 kb on - strand, within EX31_RS00265at 55.681 kb on + strand, within EX31_RS00265at 55.682 kb on - strand, within EX31_RS00265at 55.682 kb on - strand, within EX31_RS00265at 55.684 kb on - strand, within EX31_RS00265at 55.733 kb on + strand, within EX31_RS00265at 55.733 kb on + strand, within EX31_RS00265at 55.806 kb on + strandat 55.807 kb on - strandat 55.812 kb on + strandat 55.812 kb on + strandat 55.813 kb on - strandat 55.813 kb on - strandat 55.813 kb on - strandat 55.836 kb on - strandat 55.836 kb on - strandat 55.986 kb on + strandat 56.012 kb on - strandat 56.022 kb on + strandat 56.023 kb on - strandat 56.042 kb on + strandat 56.053 kb on + strandat 56.053 kb on + strandat 56.053 kb on + strandat 56.054 kb on - strandat 56.054 kb on - strandat 56.054 kb on - strandat 56.054 kb on - strandat 56.054 kb on - strandat 56.104 kb on + strandat 56.105 kb on - strandat 56.105 kb on - strandat 56.107 kb on - strandat 56.107 kb on - strandat 56.107 kb on - strandat 56.111 kb on - strandat 56.111 kb on - strandat 56.173 kb on + strandat 56.187 kb on + strandat 56.226 kb on - strandat 56.338 kb on + strandat 56.340 kb on + strandat 56.408 kb on + strandat 56.409 kb on - strandat 56.457 kb on - strandat 56.460 kb on + strandat 56.461 kb on - strandat 56.463 kb on + strandat 56.463 kb on + strandat 56.481 kb on + strandat 56.536 kb on + strandat 56.536 kb on + strandat 56.536 kb on + strandat 56.587 kb on + strandat 56.587 kb on + strandat 56.631 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
54,068 + -0.1
54,069 - +1.3
54,137 + EX31_RS00260 0.16 +0.3
54,137 + EX31_RS00260 0.16 +0.3
54,159 + EX31_RS00260 0.18 +0.8
54,161 + EX31_RS00260 0.18 -1.4
54,161 + EX31_RS00260 0.18 +1.0
54,162 - EX31_RS00260 0.18 +0.8
54,213 + EX31_RS00260 0.23 +1.1
54,213 + EX31_RS00260 0.23 -0.1
54,213 + EX31_RS00260 0.23 +0.5
54,267 - EX31_RS00260 0.28 -0.1
54,308 + EX31_RS00260 0.32 -0.5
54,308 + EX31_RS00260 0.32 +0.7
54,309 - EX31_RS00260 0.32 -2.3
54,346 + EX31_RS00260 0.35 -1.4
54,346 + EX31_RS00260 0.35 +1.3
54,453 + EX31_RS00260 0.45 +0.6
54,560 + EX31_RS00260 0.55 -0.9
54,597 + EX31_RS00260 0.59 -0.4
54,597 + EX31_RS00260 0.59 +0.3
54,597 + EX31_RS00260 0.59 +0.1
54,598 - EX31_RS00260 0.59 +0.5
54,598 - EX31_RS00260 0.59 -1.5
54,658 + EX31_RS00260 0.64 -0.6
54,684 + EX31_RS00260 0.67 -0.8
54,685 - EX31_RS00260 0.67 -0.9
54,685 - EX31_RS00260 0.67 -0.1
54,685 - EX31_RS00260 0.67 +1.7
54,685 - EX31_RS00260 0.67 -0.1
54,809 + EX31_RS00260 0.78 -0.2
54,810 - EX31_RS00260 0.79 +0.3
54,886 + EX31_RS00260 0.86 -0.4
54,886 + EX31_RS00260 0.86 +1.1
54,887 - EX31_RS00260 0.86 +0.1
54,925 + EX31_RS00260 0.89 -1.0
54,931 - EX31_RS00260 0.90 +1.2
54,979 + -0.5
54,979 + +0.9
54,999 + +0.3
54,999 + +0.5
54,999 + -0.1
55,063 + +0.1
55,063 + -0.1
55,064 - +0.3
55,064 - -0.7
55,064 - +0.4
55,127 - -0.6
55,183 + EX31_RS00265 0.16 +1.7
55,184 - EX31_RS00265 0.16 +0.3
55,184 - EX31_RS00265 0.16 +1.4
55,184 - EX31_RS00265 0.16 +0.2
55,194 + EX31_RS00265 0.17 -1.1
55,195 - EX31_RS00265 0.18 +0.7
55,195 - EX31_RS00265 0.18 -1.2
55,234 + EX31_RS00265 0.23 +1.4
55,234 + EX31_RS00265 0.23 -1.3
55,235 - EX31_RS00265 0.23 -1.0
55,280 + EX31_RS00265 0.29 +0.1
55,280 + EX31_RS00265 0.29 -0.8
55,281 - EX31_RS00265 0.29 +0.5
55,281 - EX31_RS00265 0.29 +0.3
55,284 + EX31_RS00265 0.29 -0.7
55,284 + EX31_RS00265 0.29 -1.0
55,334 + EX31_RS00265 0.36 -0.4
55,334 + EX31_RS00265 0.36 +1.4
55,334 + EX31_RS00265 0.36 +1.1
55,384 + EX31_RS00265 0.42 +0.0
55,384 + EX31_RS00265 0.42 -0.7
55,489 + EX31_RS00265 0.56 -0.3
55,489 + EX31_RS00265 0.56 +0.7
55,490 - EX31_RS00265 0.56 +0.1
55,490 - EX31_RS00265 0.56 -0.0
55,490 - EX31_RS00265 0.56 +0.5
55,490 - EX31_RS00265 0.56 -0.8
55,490 - EX31_RS00265 0.56 -1.3
55,490 - EX31_RS00265 0.56 +1.0
55,490 - EX31_RS00265 0.56 +0.5
55,490 - EX31_RS00265 0.56 +0.5
55,490 - EX31_RS00265 0.56 +1.3
55,533 - EX31_RS00265 0.62 -0.0
55,546 + EX31_RS00265 0.64 -0.4
55,598 + EX31_RS00265 0.71 +1.2
55,641 + EX31_RS00265 0.76 +1.0
55,642 - EX31_RS00265 0.76 +0.3
55,655 + EX31_RS00265 0.78 +0.6
55,655 + EX31_RS00265 0.78 -0.9
55,658 - EX31_RS00265 0.79 -0.1
55,681 + EX31_RS00265 0.82 -0.3
55,682 - EX31_RS00265 0.82 +1.8
55,682 - EX31_RS00265 0.82 -0.0
55,684 - EX31_RS00265 0.82 +1.0
55,733 + EX31_RS00265 0.88 +0.4
55,733 + EX31_RS00265 0.88 -0.5
55,806 + -0.0
55,807 - -0.6
55,812 + -2.0
55,812 + -0.7
55,813 - -0.8
55,813 - +0.3
55,813 - +0.8
55,836 - +0.5
55,836 - -0.8
55,986 + -1.8
56,012 - -0.2
56,022 + +0.3
56,023 - +0.6
56,042 + +0.7
56,053 + +0.6
56,053 + -0.5
56,053 + +1.1
56,054 - -0.2
56,054 - -0.5
56,054 - -1.0
56,054 - -0.2
56,054 - +0.4
56,104 + +0.1
56,105 - -0.8
56,105 - -0.3
56,107 - +0.6
56,107 - +1.5
56,107 - -1.9
56,111 - -0.4
56,111 - -0.7
56,173 + +0.5
56,187 + -0.4
56,226 - -0.8
56,338 + -0.8
56,340 + +0.9
56,408 + +1.2
56,409 - +0.6
56,457 - -0.4
56,460 + -0.0
56,461 - -0.6
56,463 + +0.6
56,463 + +0.2
56,481 + -0.4
56,536 + -0.2
56,536 + -0.3
56,536 + +0.3
56,587 + +0.1
56,587 + +0.8
56,631 + -2.0

Or see this region's nucleotide sequence