Strain Fitness in Rahnella sp. WP5 around EX31_RS10665

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10660 and EX31_RS10665 are separated by 46 nucleotidesEX31_RS10665 and EX31_RS10670 are separated by 107 nucleotides EX31_RS10660: EX31_RS10660 - MFS transporter, at 49,160 to 50,380 _RS10660 EX31_RS10665: EX31_RS10665 - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 50,427 to 51,407 _RS10665 EX31_RS10670: EX31_RS10670 - murein DD-endopeptidase MepM, at 51,515 to 52,849 _RS10670 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2 3at 49.783 kb on - strand, within EX31_RS10660at 49.891 kb on - strand, within EX31_RS10660at 49.894 kb on - strand, within EX31_RS10660at 49.929 kb on - strand, within EX31_RS10660at 50.043 kb on + strand, within EX31_RS10660at 50.044 kb on - strand, within EX31_RS10660at 50.069 kb on + strand, within EX31_RS10660at 50.070 kb on - strand, within EX31_RS10660at 50.088 kb on + strand, within EX31_RS10660at 50.088 kb on + strand, within EX31_RS10660at 50.089 kb on - strand, within EX31_RS10660at 50.126 kb on + strand, within EX31_RS10660at 50.149 kb on - strand, within EX31_RS10660at 50.195 kb on - strand, within EX31_RS10660at 50.228 kb on - strand, within EX31_RS10660at 50.253 kb on + strand, within EX31_RS10660at 50.254 kb on - strand, within EX31_RS10660at 50.254 kb on - strand, within EX31_RS10660at 50.273 kb on + strandat 50.274 kb on - strandat 50.299 kb on + strandat 50.513 kb on - strandat 50.513 kb on - strandat 50.618 kb on - strand, within EX31_RS10665at 50.648 kb on - strand, within EX31_RS10665at 50.648 kb on - strand, within EX31_RS10665at 50.723 kb on - strand, within EX31_RS10665at 50.723 kb on - strand, within EX31_RS10665at 50.723 kb on - strand, within EX31_RS10665at 50.723 kb on - strand, within EX31_RS10665at 50.838 kb on - strand, within EX31_RS10665at 50.888 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.147 kb on - strand, within EX31_RS10665at 51.185 kb on - strand, within EX31_RS10665at 51.185 kb on - strand, within EX31_RS10665at 51.259 kb on - strand, within EX31_RS10665at 51.259 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.261 kb on - strand, within EX31_RS10665at 51.287 kb on - strand, within EX31_RS10665at 51.344 kb on - strandat 51.344 kb on - strandat 51.344 kb on - strandat 51.344 kb on - strandat 51.344 kb on - strandat 51.369 kb on - strandat 51.376 kb on - strandat 51.420 kb on - strandat 51.437 kb on - strandat 51.443 kb on - strandat 51.443 kb on - strandat 51.457 kb on - strandat 51.488 kb on - strandat 51.488 kb on - strandat 51.488 kb on - strandat 51.488 kb on - strandat 51.488 kb on - strandat 51.488 kb on - strandat 51.561 kb on + strandat 51.562 kb on - strandat 51.562 kb on - strandat 51.562 kb on - strandat 51.562 kb on - strandat 51.562 kb on - strandat 51.562 kb on - strandat 51.562 kb on - strandat 51.566 kb on - strandat 51.566 kb on - strandat 51.578 kb on - strandat 51.683 kb on - strand, within EX31_RS10670at 51.683 kb on - strand, within EX31_RS10670at 51.746 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.758 kb on - strand, within EX31_RS10670at 51.760 kb on - strand, within EX31_RS10670at 51.760 kb on - strand, within EX31_RS10670at 51.760 kb on - strand, within EX31_RS10670at 51.772 kb on - strand, within EX31_RS10670at 51.772 kb on - strand, within EX31_RS10670at 51.772 kb on - strand, within EX31_RS10670at 51.772 kb on - strand, within EX31_RS10670at 51.772 kb on - strand, within EX31_RS10670at 51.772 kb on - strand, within EX31_RS10670at 51.798 kb on + strand, within EX31_RS10670at 51.798 kb on + strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.799 kb on - strand, within EX31_RS10670at 51.803 kb on - strand, within EX31_RS10670at 51.947 kb on - strand, within EX31_RS10670at 52.021 kb on - strand, within EX31_RS10670at 52.021 kb on - strand, within EX31_RS10670at 52.028 kb on - strand, within EX31_RS10670at 52.050 kb on + strand, within EX31_RS10670at 52.051 kb on - strand, within EX31_RS10670at 52.051 kb on - strand, within EX31_RS10670at 52.051 kb on - strand, within EX31_RS10670at 52.051 kb on - strand, within EX31_RS10670at 52.053 kb on + strand, within EX31_RS10670at 52.054 kb on - strand, within EX31_RS10670at 52.054 kb on - strand, within EX31_RS10670at 52.054 kb on - strand, within EX31_RS10670at 52.054 kb on - strand, within EX31_RS10670at 52.076 kb on - strand, within EX31_RS10670at 52.076 kb on - strand, within EX31_RS10670at 52.076 kb on - strand, within EX31_RS10670at 52.196 kb on - strand, within EX31_RS10670at 52.349 kb on - strand, within EX31_RS10670at 52.349 kb on - strand, within EX31_RS10670at 52.351 kb on - strand, within EX31_RS10670at 52.351 kb on - strand, within EX31_RS10670at 52.351 kb on - strand, within EX31_RS10670at 52.388 kb on + strand, within EX31_RS10670at 52.389 kb on - strand, within EX31_RS10670at 52.406 kb on - strand, within EX31_RS10670

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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49,783 - EX31_RS10660 0.51 -0.4
49,891 - EX31_RS10660 0.60 -1.0
49,894 - EX31_RS10660 0.60 -0.8
49,929 - EX31_RS10660 0.63 +0.4
50,043 + EX31_RS10660 0.72 +0.8
50,044 - EX31_RS10660 0.72 -0.2
50,069 + EX31_RS10660 0.74 -0.1
50,070 - EX31_RS10660 0.75 +0.5
50,088 + EX31_RS10660 0.76 -0.5
50,088 + EX31_RS10660 0.76 +1.0
50,089 - EX31_RS10660 0.76 -0.2
50,126 + EX31_RS10660 0.79 -0.2
50,149 - EX31_RS10660 0.81 +0.1
50,195 - EX31_RS10660 0.85 +0.3
50,228 - EX31_RS10660 0.87 +0.6
50,253 + EX31_RS10660 0.90 +0.7
50,254 - EX31_RS10660 0.90 +0.9
50,254 - EX31_RS10660 0.90 +0.0
50,273 + +0.6
50,274 - +0.3
50,299 + +0.9
50,513 - -0.8
50,513 - +0.2
50,618 - EX31_RS10665 0.19 -0.8
50,648 - EX31_RS10665 0.23 -1.0
50,648 - EX31_RS10665 0.23 +0.4
50,723 - EX31_RS10665 0.30 -1.9
50,723 - EX31_RS10665 0.30 -1.7
50,723 - EX31_RS10665 0.30 -0.7
50,723 - EX31_RS10665 0.30 -0.1
50,838 - EX31_RS10665 0.42 -2.1
50,888 - EX31_RS10665 0.47 -0.6
51,147 - EX31_RS10665 0.73 -0.8
51,147 - EX31_RS10665 0.73 +1.3
51,147 - EX31_RS10665 0.73 -1.8
51,147 - EX31_RS10665 0.73 -2.2
51,147 - EX31_RS10665 0.73 -1.7
51,185 - EX31_RS10665 0.77 -1.0
51,185 - EX31_RS10665 0.77 -1.6
51,259 - EX31_RS10665 0.85 -0.4
51,259 - EX31_RS10665 0.85 -0.7
51,261 - EX31_RS10665 0.85 -0.0
51,261 - EX31_RS10665 0.85 -0.7
51,261 - EX31_RS10665 0.85 -0.4
51,261 - EX31_RS10665 0.85 +0.6
51,261 - EX31_RS10665 0.85 -1.1
51,287 - EX31_RS10665 0.88 -1.8
51,344 - +1.2
51,344 - -0.8
51,344 - +0.8
51,344 - -1.4
51,344 - -0.6
51,369 - -2.2
51,376 - -0.7
51,420 - +0.4
51,437 - +1.5
51,443 - +0.8
51,443 - -1.3
51,457 - -1.0
51,488 - +0.8
51,488 - -0.0
51,488 - +0.0
51,488 - -1.2
51,488 - +1.3
51,488 - -0.4
51,561 + +1.4
51,562 - -0.2
51,562 - -0.3
51,562 - +0.1
51,562 - -0.2
51,562 - -0.3
51,562 - -1.4
51,562 - -0.9
51,566 - -0.4
51,566 - -1.2
51,578 - +0.0
51,683 - EX31_RS10670 0.13 +0.3
51,683 - EX31_RS10670 0.13 -1.7
51,746 - EX31_RS10670 0.17 +0.4
51,758 - EX31_RS10670 0.18 +1.2
51,758 - EX31_RS10670 0.18 +1.1
51,758 - EX31_RS10670 0.18 -2.4
51,758 - EX31_RS10670 0.18 +0.2
51,758 - EX31_RS10670 0.18 +1.1
51,758 - EX31_RS10670 0.18 -0.2
51,758 - EX31_RS10670 0.18 +1.0
51,758 - EX31_RS10670 0.18 -0.3
51,758 - EX31_RS10670 0.18 +0.6
51,758 - EX31_RS10670 0.18 -0.2
51,760 - EX31_RS10670 0.18 +1.2
51,760 - EX31_RS10670 0.18 -0.4
51,760 - EX31_RS10670 0.18 -1.0
51,772 - EX31_RS10670 0.19 +1.7
51,772 - EX31_RS10670 0.19 +2.1
51,772 - EX31_RS10670 0.19 +0.2
51,772 - EX31_RS10670 0.19 +0.1
51,772 - EX31_RS10670 0.19 +2.8
51,772 - EX31_RS10670 0.19 +1.4
51,798 + EX31_RS10670 0.21 -0.6
51,798 + EX31_RS10670 0.21 +0.0
51,799 - EX31_RS10670 0.21 -0.0
51,799 - EX31_RS10670 0.21 +1.7
51,799 - EX31_RS10670 0.21 +0.5
51,799 - EX31_RS10670 0.21 +0.0
51,799 - EX31_RS10670 0.21 -0.1
51,799 - EX31_RS10670 0.21 -0.7
51,799 - EX31_RS10670 0.21 +2.0
51,799 - EX31_RS10670 0.21 +0.1
51,799 - EX31_RS10670 0.21 -0.5
51,799 - EX31_RS10670 0.21 -0.1
51,799 - EX31_RS10670 0.21 +0.0
51,799 - EX31_RS10670 0.21 +0.1
51,799 - EX31_RS10670 0.21 +1.5
51,799 - EX31_RS10670 0.21 -0.8
51,799 - EX31_RS10670 0.21 -0.9
51,799 - EX31_RS10670 0.21 +0.4
51,799 - EX31_RS10670 0.21 -0.4
51,803 - EX31_RS10670 0.22 -0.0
51,947 - EX31_RS10670 0.32 -1.3
52,021 - EX31_RS10670 0.38 -0.1
52,021 - EX31_RS10670 0.38 -0.4
52,028 - EX31_RS10670 0.38 +0.4
52,050 + EX31_RS10670 0.40 +0.5
52,051 - EX31_RS10670 0.40 -1.3
52,051 - EX31_RS10670 0.40 -0.7
52,051 - EX31_RS10670 0.40 +1.0
52,051 - EX31_RS10670 0.40 +1.1
52,053 + EX31_RS10670 0.40 -0.2
52,054 - EX31_RS10670 0.40 -0.4
52,054 - EX31_RS10670 0.40 +0.1
52,054 - EX31_RS10670 0.40 +0.7
52,054 - EX31_RS10670 0.40 +0.9
52,076 - EX31_RS10670 0.42 +0.1
52,076 - EX31_RS10670 0.42 -0.2
52,076 - EX31_RS10670 0.42 -0.4
52,196 - EX31_RS10670 0.51 +0.4
52,349 - EX31_RS10670 0.62 -0.4
52,349 - EX31_RS10670 0.62 +0.3
52,351 - EX31_RS10670 0.63 -0.0
52,351 - EX31_RS10670 0.63 -0.6
52,351 - EX31_RS10670 0.63 -1.9
52,388 + EX31_RS10670 0.65 +0.6
52,389 - EX31_RS10670 0.65 -1.4
52,406 - EX31_RS10670 0.67 -0.2

Or see this region's nucleotide sequence