Strain Fitness in Rahnella sp. WP5 around EX31_RS10650

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10645 and EX31_RS10650 are separated by 13 nucleotidesEX31_RS10650 and EX31_RS10655 are separated by 14 nucleotides EX31_RS10645: EX31_RS10645 - aspartate aminotransferase family protein, at 43,770 to 45,338 _RS10645 EX31_RS10650: EX31_RS10650 - lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein, at 45,352 to 46,662 _RS10650 EX31_RS10655: EX31_RS10655 - GNAT family N-acetyltransferase, at 46,677 to 49,061 _RS10655 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2 3at 44.367 kb on + strand, within EX31_RS10645at 44.367 kb on + strand, within EX31_RS10645at 44.368 kb on - strand, within EX31_RS10645at 44.368 kb on - strand, within EX31_RS10645at 44.368 kb on - strand, within EX31_RS10645at 44.466 kb on + strand, within EX31_RS10645at 45.062 kb on + strand, within EX31_RS10645at 45.229 kb on + strandat 45.379 kb on + strandat 45.380 kb on - strandat 45.625 kb on + strand, within EX31_RS10650at 45.625 kb on + strand, within EX31_RS10650at 45.670 kb on + strand, within EX31_RS10650at 45.802 kb on + strand, within EX31_RS10650at 45.979 kb on + strand, within EX31_RS10650at 45.980 kb on - strand, within EX31_RS10650at 46.012 kb on + strand, within EX31_RS10650at 46.165 kb on + strand, within EX31_RS10650at 46.165 kb on + strand, within EX31_RS10650at 46.165 kb on + strand, within EX31_RS10650at 46.166 kb on - strand, within EX31_RS10650at 46.166 kb on - strand, within EX31_RS10650at 46.168 kb on - strand, within EX31_RS10650at 46.177 kb on - strand, within EX31_RS10650at 46.201 kb on + strand, within EX31_RS10650at 46.214 kb on - strand, within EX31_RS10650at 46.214 kb on - strand, within EX31_RS10650at 46.214 kb on - strand, within EX31_RS10650at 46.252 kb on + strand, within EX31_RS10650at 46.254 kb on + strand, within EX31_RS10650at 46.255 kb on - strand, within EX31_RS10650at 46.255 kb on - strand, within EX31_RS10650at 46.414 kb on + strand, within EX31_RS10650at 46.414 kb on + strand, within EX31_RS10650at 46.415 kb on - strand, within EX31_RS10650at 46.415 kb on - strand, within EX31_RS10650at 46.516 kb on - strand, within EX31_RS10650at 46.571 kb on + strandat 46.571 kb on + strandat 46.661 kb on - strandat 46.673 kb on - strandat 46.774 kb on + strandat 46.774 kb on + strandat 46.775 kb on - strandat 46.827 kb on - strandat 46.827 kb on - strandat 46.962 kb on + strand, within EX31_RS10655at 46.962 kb on + strand, within EX31_RS10655at 46.962 kb on + strand, within EX31_RS10655at 46.963 kb on - strand, within EX31_RS10655at 46.965 kb on + strand, within EX31_RS10655at 46.965 kb on + strand, within EX31_RS10655at 46.966 kb on - strand, within EX31_RS10655at 46.966 kb on - strand, within EX31_RS10655at 46.997 kb on + strand, within EX31_RS10655at 46.997 kb on + strand, within EX31_RS10655at 46.997 kb on + strand, within EX31_RS10655at 46.998 kb on - strand, within EX31_RS10655at 47.068 kb on - strand, within EX31_RS10655at 47.121 kb on - strand, within EX31_RS10655at 47.189 kb on + strand, within EX31_RS10655at 47.189 kb on + strand, within EX31_RS10655at 47.189 kb on + strand, within EX31_RS10655at 47.189 kb on + strand, within EX31_RS10655at 47.190 kb on - strand, within EX31_RS10655at 47.336 kb on + strand, within EX31_RS10655at 47.336 kb on + strand, within EX31_RS10655at 47.337 kb on - strand, within EX31_RS10655at 47.440 kb on + strand, within EX31_RS10655at 47.580 kb on - strand, within EX31_RS10655at 47.604 kb on + strand, within EX31_RS10655at 47.605 kb on - strand, within EX31_RS10655at 47.605 kb on - strand, within EX31_RS10655at 47.632 kb on - strand, within EX31_RS10655

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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44,367 + EX31_RS10645 0.38 -0.4
44,367 + EX31_RS10645 0.38 -1.1
44,368 - EX31_RS10645 0.38 -0.2
44,368 - EX31_RS10645 0.38 +0.4
44,368 - EX31_RS10645 0.38 +0.2
44,466 + EX31_RS10645 0.44 +1.9
45,062 + EX31_RS10645 0.82 +0.4
45,229 + +0.9
45,379 + +0.5
45,380 - +0.5
45,625 + EX31_RS10650 0.21 +1.0
45,625 + EX31_RS10650 0.21 +1.0
45,670 + EX31_RS10650 0.24 +0.2
45,802 + EX31_RS10650 0.34 -0.1
45,979 + EX31_RS10650 0.48 -0.8
45,980 - EX31_RS10650 0.48 -1.2
46,012 + EX31_RS10650 0.50 -0.6
46,165 + EX31_RS10650 0.62 -0.6
46,165 + EX31_RS10650 0.62 -1.4
46,165 + EX31_RS10650 0.62 +0.2
46,166 - EX31_RS10650 0.62 +2.0
46,166 - EX31_RS10650 0.62 -1.1
46,168 - EX31_RS10650 0.62 +1.8
46,177 - EX31_RS10650 0.63 -0.5
46,201 + EX31_RS10650 0.65 +0.3
46,214 - EX31_RS10650 0.66 +0.8
46,214 - EX31_RS10650 0.66 -0.7
46,214 - EX31_RS10650 0.66 +0.8
46,252 + EX31_RS10650 0.69 +0.4
46,254 + EX31_RS10650 0.69 +0.8
46,255 - EX31_RS10650 0.69 -0.6
46,255 - EX31_RS10650 0.69 -2.0
46,414 + EX31_RS10650 0.81 +1.2
46,414 + EX31_RS10650 0.81 -0.4
46,415 - EX31_RS10650 0.81 +0.3
46,415 - EX31_RS10650 0.81 +2.6
46,516 - EX31_RS10650 0.89 +0.1
46,571 + -1.7
46,571 + -1.4
46,661 - -1.4
46,673 - -0.7
46,774 + +0.7
46,774 + +1.0
46,775 - +0.1
46,827 - +0.8
46,827 - -0.5
46,962 + EX31_RS10655 0.12 +0.3
46,962 + EX31_RS10655 0.12 +0.7
46,962 + EX31_RS10655 0.12 -0.2
46,963 - EX31_RS10655 0.12 -0.2
46,965 + EX31_RS10655 0.12 -0.9
46,965 + EX31_RS10655 0.12 +0.7
46,966 - EX31_RS10655 0.12 +2.8
46,966 - EX31_RS10655 0.12 +0.4
46,997 + EX31_RS10655 0.13 +2.2
46,997 + EX31_RS10655 0.13 -1.0
46,997 + EX31_RS10655 0.13 -0.2
46,998 - EX31_RS10655 0.13 +1.2
47,068 - EX31_RS10655 0.16 +1.5
47,121 - EX31_RS10655 0.19 -1.6
47,189 + EX31_RS10655 0.21 -1.5
47,189 + EX31_RS10655 0.21 +0.4
47,189 + EX31_RS10655 0.21 +1.0
47,189 + EX31_RS10655 0.21 +1.0
47,190 - EX31_RS10655 0.22 -0.3
47,336 + EX31_RS10655 0.28 +0.4
47,336 + EX31_RS10655 0.28 +0.7
47,337 - EX31_RS10655 0.28 -0.2
47,440 + EX31_RS10655 0.32 -0.3
47,580 - EX31_RS10655 0.38 -1.3
47,604 + EX31_RS10655 0.39 -0.9
47,605 - EX31_RS10655 0.39 -0.9
47,605 - EX31_RS10655 0.39 +1.6
47,632 - EX31_RS10655 0.40 +0.4

Or see this region's nucleotide sequence