Strain Fitness in Rahnella sp. WP5 around EX31_RS09670

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09660 and EX31_RS09665 are separated by 206 nucleotidesEX31_RS09665 and EX31_RS09670 are separated by 85 nucleotidesEX31_RS09670 and EX31_RS09675 are separated by 161 nucleotides EX31_RS09660: EX31_RS09660 - aspartate:alanine antiporter, at 133,449 to 135,131 _RS09660 EX31_RS09665: EX31_RS09665 - hypothetical protein, at 135,338 to 135,649 _RS09665 EX31_RS09670: EX31_RS09670 - bleomycin resistance protein, at 135,735 to 136,100 _RS09670 EX31_RS09675: EX31_RS09675 - porin OmpC, at 136,262 to 137,371 _RS09675 Position (kb) 135 136 137Strain fitness (log2 ratio) -2 -1 0 1 2at 134.742 kb on - strand, within EX31_RS09660at 134.753 kb on + strand, within EX31_RS09660at 134.934 kb on + strand, within EX31_RS09660at 134.934 kb on + strand, within EX31_RS09660at 134.934 kb on + strand, within EX31_RS09660at 134.935 kb on - strand, within EX31_RS09660at 134.935 kb on - strand, within EX31_RS09660at 135.064 kb on - strandat 135.079 kb on + strandat 135.079 kb on + strandat 135.080 kb on - strandat 135.080 kb on - strandat 135.082 kb on + strandat 135.082 kb on + strandat 135.105 kb on - strandat 135.225 kb on + strandat 135.327 kb on + strandat 135.328 kb on - strandat 135.392 kb on + strand, within EX31_RS09665at 135.393 kb on - strand, within EX31_RS09665at 135.393 kb on - strand, within EX31_RS09665at 135.418 kb on - strand, within EX31_RS09665at 135.481 kb on - strand, within EX31_RS09665at 135.481 kb on - strand, within EX31_RS09665at 135.873 kb on - strand, within EX31_RS09670at 136.012 kb on + strand, within EX31_RS09670at 136.012 kb on + strand, within EX31_RS09670at 136.013 kb on - strand, within EX31_RS09670at 136.013 kb on - strand, within EX31_RS09670at 136.080 kb on - strandat 136.119 kb on - strandat 136.119 kb on - strandat 136.119 kb on - strandat 136.242 kb on - strandat 136.242 kb on - strandat 136.261 kb on - strandat 136.355 kb on - strandat 136.355 kb on - strandat 136.355 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.366 kb on - strandat 136.393 kb on - strand, within EX31_RS09675at 136.393 kb on - strand, within EX31_RS09675at 136.393 kb on - strand, within EX31_RS09675at 136.393 kb on - strand, within EX31_RS09675at 136.404 kb on - strand, within EX31_RS09675at 136.404 kb on - strand, within EX31_RS09675at 136.404 kb on - strand, within EX31_RS09675at 136.404 kb on - strand, within EX31_RS09675at 136.404 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.414 kb on - strand, within EX31_RS09675at 136.418 kb on - strand, within EX31_RS09675at 136.418 kb on - strand, within EX31_RS09675at 136.438 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.471 kb on - strand, within EX31_RS09675at 136.507 kb on - strand, within EX31_RS09675at 136.507 kb on - strand, within EX31_RS09675at 136.507 kb on - strand, within EX31_RS09675at 136.552 kb on - strand, within EX31_RS09675at 136.591 kb on - strand, within EX31_RS09675at 136.603 kb on - strand, within EX31_RS09675at 136.603 kb on - strand, within EX31_RS09675at 136.618 kb on - strand, within EX31_RS09675at 136.618 kb on - strand, within EX31_RS09675at 136.618 kb on - strand, within EX31_RS09675at 136.618 kb on - strand, within EX31_RS09675at 136.618 kb on - strand, within EX31_RS09675at 136.622 kb on - strand, within EX31_RS09675at 136.636 kb on - strand, within EX31_RS09675at 136.636 kb on - strand, within EX31_RS09675at 136.636 kb on - strand, within EX31_RS09675at 136.636 kb on - strand, within EX31_RS09675at 136.636 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.771 kb on - strand, within EX31_RS09675at 136.829 kb on - strand, within EX31_RS09675at 136.829 kb on - strand, within EX31_RS09675at 136.829 kb on - strand, within EX31_RS09675at 136.829 kb on - strand, within EX31_RS09675at 136.829 kb on - strand, within EX31_RS09675at 136.829 kb on - strand, within EX31_RS09675at 136.861 kb on - strand, within EX31_RS09675at 136.915 kb on - strand, within EX31_RS09675at 136.923 kb on - strand, within EX31_RS09675at 136.923 kb on - strand, within EX31_RS09675at 136.923 kb on - strand, within EX31_RS09675at 136.923 kb on - strand, within EX31_RS09675at 136.963 kb on - strand, within EX31_RS09675at 136.967 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.014 kb on - strand, within EX31_RS09675at 137.030 kb on - strand, within EX31_RS09675at 137.030 kb on - strand, within EX31_RS09675at 137.030 kb on - strand, within EX31_RS09675at 137.030 kb on - strand, within EX31_RS09675

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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134,742 - EX31_RS09660 0.77 -0.5
134,753 + EX31_RS09660 0.77 +0.4
134,934 + EX31_RS09660 0.88 +0.1
134,934 + EX31_RS09660 0.88 -0.1
134,934 + EX31_RS09660 0.88 +0.3
134,935 - EX31_RS09660 0.88 -1.5
134,935 - EX31_RS09660 0.88 -0.5
135,064 - +0.2
135,079 + -1.0
135,079 + -1.7
135,080 - -0.3
135,080 - -1.2
135,082 + +0.6
135,082 + -0.7
135,105 - -0.8
135,225 + +0.4
135,327 + +0.7
135,328 - +0.6
135,392 + EX31_RS09665 0.17 +0.3
135,393 - EX31_RS09665 0.18 -2.3
135,393 - EX31_RS09665 0.18 +0.2
135,418 - EX31_RS09665 0.26 +0.7
135,481 - EX31_RS09665 0.46 +1.1
135,481 - EX31_RS09665 0.46 +0.4
135,873 - EX31_RS09670 0.38 -0.4
136,012 + EX31_RS09670 0.76 -1.1
136,012 + EX31_RS09670 0.76 -1.2
136,013 - EX31_RS09670 0.76 -0.1
136,013 - EX31_RS09670 0.76 -1.9
136,080 - -0.4
136,119 - +0.5
136,119 - -0.9
136,119 - -0.2
136,242 - -0.6
136,242 - -0.0
136,261 - +0.5
136,355 - +0.8
136,355 - -0.1
136,355 - -0.2
136,366 - -0.8
136,366 - -0.9
136,366 - -0.4
136,366 - -0.9
136,366 - -0.4
136,366 - +0.4
136,366 - -0.3
136,366 - -0.0
136,366 - +0.6
136,393 - EX31_RS09675 0.12 +1.4
136,393 - EX31_RS09675 0.12 -0.0
136,393 - EX31_RS09675 0.12 +0.5
136,393 - EX31_RS09675 0.12 +1.0
136,404 - EX31_RS09675 0.13 -0.4
136,404 - EX31_RS09675 0.13 -0.1
136,404 - EX31_RS09675 0.13 +0.0
136,404 - EX31_RS09675 0.13 -0.2
136,404 - EX31_RS09675 0.13 +0.2
136,414 - EX31_RS09675 0.14 -0.1
136,414 - EX31_RS09675 0.14 -0.4
136,414 - EX31_RS09675 0.14 -0.1
136,414 - EX31_RS09675 0.14 -0.5
136,414 - EX31_RS09675 0.14 -0.2
136,414 - EX31_RS09675 0.14 -0.9
136,414 - EX31_RS09675 0.14 +0.4
136,414 - EX31_RS09675 0.14 -0.4
136,414 - EX31_RS09675 0.14 +0.8
136,414 - EX31_RS09675 0.14 +1.5
136,414 - EX31_RS09675 0.14 +0.4
136,414 - EX31_RS09675 0.14 -1.0
136,414 - EX31_RS09675 0.14 -1.2
136,418 - EX31_RS09675 0.14 -0.9
136,418 - EX31_RS09675 0.14 +0.6
136,438 - EX31_RS09675 0.16 -0.2
136,471 - EX31_RS09675 0.19 -0.4
136,471 - EX31_RS09675 0.19 +0.8
136,471 - EX31_RS09675 0.19 +1.1
136,471 - EX31_RS09675 0.19 -2.0
136,471 - EX31_RS09675 0.19 -0.4
136,471 - EX31_RS09675 0.19 -0.6
136,471 - EX31_RS09675 0.19 -0.2
136,471 - EX31_RS09675 0.19 -1.4
136,471 - EX31_RS09675 0.19 +0.4
136,507 - EX31_RS09675 0.22 -0.3
136,507 - EX31_RS09675 0.22 -0.3
136,507 - EX31_RS09675 0.22 -0.3
136,552 - EX31_RS09675 0.26 +1.7
136,591 - EX31_RS09675 0.30 -0.2
136,603 - EX31_RS09675 0.31 +0.7
136,603 - EX31_RS09675 0.31 +0.0
136,618 - EX31_RS09675 0.32 +1.0
136,618 - EX31_RS09675 0.32 -0.2
136,618 - EX31_RS09675 0.32 +0.1
136,618 - EX31_RS09675 0.32 +1.2
136,618 - EX31_RS09675 0.32 +1.7
136,622 - EX31_RS09675 0.32 +1.2
136,636 - EX31_RS09675 0.34 -0.1
136,636 - EX31_RS09675 0.34 +0.2
136,636 - EX31_RS09675 0.34 -0.4
136,636 - EX31_RS09675 0.34 +1.2
136,636 - EX31_RS09675 0.34 -1.2
136,771 - EX31_RS09675 0.46 +0.3
136,771 - EX31_RS09675 0.46 +0.1
136,771 - EX31_RS09675 0.46 +0.8
136,771 - EX31_RS09675 0.46 +0.2
136,771 - EX31_RS09675 0.46 -0.0
136,771 - EX31_RS09675 0.46 -0.5
136,771 - EX31_RS09675 0.46 -0.5
136,771 - EX31_RS09675 0.46 +1.1
136,771 - EX31_RS09675 0.46 -0.2
136,771 - EX31_RS09675 0.46 -0.1
136,771 - EX31_RS09675 0.46 -1.0
136,771 - EX31_RS09675 0.46 -0.4
136,771 - EX31_RS09675 0.46 +0.6
136,829 - EX31_RS09675 0.51 -0.4
136,829 - EX31_RS09675 0.51 +0.2
136,829 - EX31_RS09675 0.51 -0.0
136,829 - EX31_RS09675 0.51 -0.9
136,829 - EX31_RS09675 0.51 +1.0
136,829 - EX31_RS09675 0.51 +1.2
136,861 - EX31_RS09675 0.54 +0.2
136,915 - EX31_RS09675 0.59 -0.3
136,923 - EX31_RS09675 0.60 -0.1
136,923 - EX31_RS09675 0.60 +0.8
136,923 - EX31_RS09675 0.60 -0.2
136,923 - EX31_RS09675 0.60 +0.2
136,963 - EX31_RS09675 0.63 -0.2
136,967 - EX31_RS09675 0.64 -0.6
137,014 - EX31_RS09675 0.68 -0.6
137,014 - EX31_RS09675 0.68 -0.0
137,014 - EX31_RS09675 0.68 -0.9
137,014 - EX31_RS09675 0.68 -0.5
137,014 - EX31_RS09675 0.68 -0.0
137,014 - EX31_RS09675 0.68 -0.8
137,014 - EX31_RS09675 0.68 +0.1
137,030 - EX31_RS09675 0.69 -1.4
137,030 - EX31_RS09675 0.69 +1.8
137,030 - EX31_RS09675 0.69 -1.0
137,030 - EX31_RS09675 0.69 -0.1

Or see this region's nucleotide sequence