Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08165 and EX31_RS08170 are separated by 186 nucleotides EX31_RS08170 and EX31_RS08175 are separated by 107 nucleotides EX31_RS08175 and EX31_RS08180 are separated by 180 nucleotides
EX31_RS08165: EX31_RS08165 - undecaprenyl-diphosphate phosphatase, at 127,035 to 127,859
_RS08165
EX31_RS08170: EX31_RS08170 - bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase, at 128,046 to 128,402
_RS08170
EX31_RS08175: EX31_RS08175 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 128,510 to 129,139
_RS08175
EX31_RS08180: EX31_RS08180 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 129,320 to 130,333
_RS08180
Position (kb) 128
129
130 Strain fitness (log2 ratio) -2
-1
0
1 at 127.574 kb on + strand, within EX31_RS08165 at 127.577 kb on + strand, within EX31_RS08165 at 127.577 kb on + strand, within EX31_RS08165 at 127.577 kb on + strand, within EX31_RS08165 at 127.577 kb on + strand, within EX31_RS08165 at 127.577 kb on + strand, within EX31_RS08165 at 127.578 kb on - strand, within EX31_RS08165 at 127.584 kb on + strand, within EX31_RS08165 at 127.585 kb on - strand, within EX31_RS08165 at 127.644 kb on + strand, within EX31_RS08165 at 127.644 kb on + strand, within EX31_RS08165 at 127.644 kb on + strand, within EX31_RS08165 at 127.644 kb on + strand, within EX31_RS08165 at 127.644 kb on + strand, within EX31_RS08165 at 127.644 kb on + strand, within EX31_RS08165 at 127.644 kb on + strand, within EX31_RS08165 at 127.644 kb on + strand, within EX31_RS08165 at 127.645 kb on - strand, within EX31_RS08165 at 127.645 kb on - strand, within EX31_RS08165 at 127.645 kb on - strand, within EX31_RS08165 at 127.645 kb on - strand, within EX31_RS08165 at 127.645 kb on - strand, within EX31_RS08165 at 127.645 kb on - strand, within EX31_RS08165 at 127.645 kb on - strand, within EX31_RS08165 at 127.645 kb on - strand, within EX31_RS08165 at 127.645 kb on - strand, within EX31_RS08165 at 127.645 kb on - strand, within EX31_RS08165 at 127.698 kb on + strand, within EX31_RS08165 at 127.698 kb on + strand, within EX31_RS08165 at 127.699 kb on - strand, within EX31_RS08165 at 127.699 kb on - strand, within EX31_RS08165 at 127.699 kb on - strand, within EX31_RS08165 at 127.699 kb on - strand, within EX31_RS08165 at 127.699 kb on - strand, within EX31_RS08165 at 127.699 kb on - strand, within EX31_RS08165 at 127.730 kb on + strand, within EX31_RS08165 at 127.730 kb on + strand, within EX31_RS08165 at 127.763 kb on + strand, within EX31_RS08165 at 127.763 kb on + strand, within EX31_RS08165 at 127.763 kb on + strand, within EX31_RS08165 at 127.764 kb on - strand, within EX31_RS08165 at 127.764 kb on - strand, within EX31_RS08165 at 127.778 kb on + strand at 127.779 kb on - strand at 127.779 kb on - strand at 127.873 kb on + strand at 127.880 kb on + strand at 127.902 kb on + strand at 127.902 kb on + strand at 127.902 kb on + strand at 127.902 kb on + strand at 127.902 kb on + strand at 127.902 kb on + strand at 127.902 kb on + strand at 127.902 kb on + strand at 127.903 kb on - strand at 127.903 kb on - strand at 127.903 kb on - strand at 127.903 kb on - strand at 127.903 kb on - strand at 127.903 kb on - strand at 127.903 kb on - strand at 127.903 kb on - strand at 127.903 kb on - strand at 127.903 kb on - strand at 127.903 kb on - strand at 127.908 kb on + strand at 127.908 kb on + strand at 127.908 kb on + strand at 127.908 kb on + strand at 127.908 kb on + strand at 127.908 kb on + strand at 127.908 kb on + strand at 127.909 kb on - strand at 127.909 kb on - strand at 127.909 kb on - strand at 127.909 kb on - strand at 127.909 kb on - strand at 127.909 kb on - strand at 127.909 kb on - strand at 127.909 kb on - strand at 127.909 kb on - strand at 127.913 kb on + strand at 127.913 kb on + strand at 127.913 kb on + strand at 127.913 kb on + strand at 127.914 kb on - strand at 127.914 kb on - strand at 127.914 kb on - strand at 127.914 kb on - strand at 127.914 kb on - strand at 127.914 kb on - strand at 127.914 kb on - strand at 127.914 kb on - strand at 127.914 kb on - strand at 127.923 kb on - strand at 127.954 kb on + strand at 127.987 kb on - strand at 127.997 kb on + strand at 127.998 kb on - strand at 128.010 kb on - strand at 128.010 kb on - strand at 128.047 kb on + strand at 128.047 kb on + strand at 128.458 kb on - strand at 128.460 kb on + strand at 128.461 kb on - strand at 128.461 kb on - strand at 128.461 kb on - strand at 128.461 kb on - strand at 128.461 kb on - strand at 128.461 kb on - strand at 128.461 kb on - strand at 128.491 kb on + strand at 128.492 kb on - strand at 128.492 kb on - strand at 128.492 kb on - strand at 128.494 kb on + strand at 128.494 kb on + strand at 128.495 kb on - strand at 128.509 kb on + strand at 128.509 kb on + strand at 128.510 kb on - strand at 128.518 kb on + strand at 128.536 kb on + strand at 128.572 kb on + strand at 128.572 kb on + strand at 128.573 kb on - strand, within EX31_RS08175 at 128.573 kb on - strand, within EX31_RS08175 at 128.649 kb on + strand, within EX31_RS08175 at 128.650 kb on - strand, within EX31_RS08175 at 128.749 kb on + strand, within EX31_RS08175 at 128.749 kb on + strand, within EX31_RS08175 at 128.749 kb on + strand, within EX31_RS08175 at 128.749 kb on + strand, within EX31_RS08175 at 128.749 kb on + strand, within EX31_RS08175 at 128.750 kb on - strand, within EX31_RS08175 at 128.750 kb on - strand, within EX31_RS08175 at 128.750 kb on - strand, within EX31_RS08175 at 128.750 kb on - strand, within EX31_RS08175 at 128.750 kb on - strand, within EX31_RS08175 at 128.750 kb on - strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.753 kb on + strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.754 kb on - strand, within EX31_RS08175 at 128.791 kb on + strand, within EX31_RS08175 at 128.791 kb on + strand, within EX31_RS08175 at 128.791 kb on + strand, within EX31_RS08175 at 128.796 kb on - strand, within EX31_RS08175 at 128.796 kb on - strand, within EX31_RS08175 at 128.796 kb on - strand, within EX31_RS08175 at 128.969 kb on + strand, within EX31_RS08175 at 128.969 kb on + strand, within EX31_RS08175 at 128.969 kb on + strand, within EX31_RS08175 at 128.970 kb on - strand, within EX31_RS08175 at 128.970 kb on - strand, within EX31_RS08175 at 128.970 kb on - strand, within EX31_RS08175 at 128.970 kb on - strand, within EX31_RS08175 at 129.049 kb on + strand, within EX31_RS08175 at 129.049 kb on + strand, within EX31_RS08175 at 129.050 kb on - strand, within EX31_RS08175 at 129.050 kb on - strand, within EX31_RS08175 at 129.091 kb on + strand at 129.092 kb on - strand at 129.092 kb on - strand at 129.127 kb on + strand at 129.127 kb on + strand at 129.127 kb on + strand at 129.128 kb on - strand at 129.137 kb on + strand at 129.137 kb on + strand at 129.137 kb on + strand at 129.138 kb on - strand at 129.138 kb on - strand at 129.138 kb on - strand at 129.144 kb on + strand at 129.164 kb on + strand at 129.164 kb on + strand at 129.266 kb on + strand at 129.266 kb on + strand at 129.266 kb on + strand at 129.266 kb on + strand at 129.266 kb on + strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.267 kb on - strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.274 kb on + strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.275 kb on - strand at 129.276 kb on + strand at 129.276 kb on + strand at 129.276 kb on + strand at 129.276 kb on + strand at 129.276 kb on + strand at 129.276 kb on + strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 127,574 + EX31_RS08165 0.65 -0.8 127,577 + EX31_RS08165 0.66 +0.2 127,577 + EX31_RS08165 0.66 -0.0 127,577 + EX31_RS08165 0.66 +0.7 127,577 + EX31_RS08165 0.66 -0.3 127,577 + EX31_RS08165 0.66 +0.6 127,578 - EX31_RS08165 0.66 -0.2 127,584 + EX31_RS08165 0.67 -0.2 127,585 - EX31_RS08165 0.67 +1.3 127,644 + EX31_RS08165 0.74 -0.8 127,644 + EX31_RS08165 0.74 -0.5 127,644 + EX31_RS08165 0.74 +0.9 127,644 + EX31_RS08165 0.74 +0.0 127,644 + EX31_RS08165 0.74 +0.5 127,644 + EX31_RS08165 0.74 +0.2 127,644 + EX31_RS08165 0.74 +1.2 127,644 + EX31_RS08165 0.74 -0.3 127,645 - EX31_RS08165 0.74 +0.3 127,645 - EX31_RS08165 0.74 +0.9 127,645 - EX31_RS08165 0.74 +0.3 127,645 - EX31_RS08165 0.74 +0.1 127,645 - EX31_RS08165 0.74 +0.6 127,645 - EX31_RS08165 0.74 -0.3 127,645 - EX31_RS08165 0.74 -0.5 127,645 - EX31_RS08165 0.74 -0.2 127,645 - EX31_RS08165 0.74 -0.5 127,645 - EX31_RS08165 0.74 +0.2 127,698 + EX31_RS08165 0.80 -0.7 127,698 + EX31_RS08165 0.80 -0.1 127,699 - EX31_RS08165 0.80 +1.0 127,699 - EX31_RS08165 0.80 -0.9 127,699 - EX31_RS08165 0.80 +0.4 127,699 - EX31_RS08165 0.80 -0.6 127,699 - EX31_RS08165 0.80 +0.2 127,699 - EX31_RS08165 0.80 +1.2 127,730 + EX31_RS08165 0.84 -0.2 127,730 + EX31_RS08165 0.84 -1.3 127,763 + EX31_RS08165 0.88 +0.6 127,763 + EX31_RS08165 0.88 +0.3 127,763 + EX31_RS08165 0.88 -0.3 127,764 - EX31_RS08165 0.88 -1.3 127,764 - EX31_RS08165 0.88 +0.8 127,778 + -0.2 127,779 - -0.0 127,779 - -0.9 127,873 + -0.9 127,880 + +1.0 127,902 + -0.4 127,902 + -0.4 127,902 + +1.4 127,902 + -1.3 127,902 + +1.6 127,902 + -0.2 127,902 + -0.7 127,902 + -0.1 127,903 - -0.5 127,903 - +1.4 127,903 - +1.4 127,903 - +0.5 127,903 - +0.0 127,903 - -0.7 127,903 - +0.6 127,903 - +0.4 127,903 - -0.4 127,903 - +0.5 127,903 - +1.0 127,908 + -0.1 127,908 + +0.6 127,908 + -0.8 127,908 + +0.2 127,908 + +1.0 127,908 + +1.0 127,908 + -0.4 127,909 - -2.0 127,909 - +0.1 127,909 - -0.0 127,909 - +0.2 127,909 - +0.6 127,909 - +1.2 127,909 - -0.2 127,909 - +1.6 127,909 - +0.7 127,913 + -0.7 127,913 + +0.1 127,913 + +0.6 127,913 + -0.0 127,914 - +0.8 127,914 - -0.0 127,914 - +0.8 127,914 - +0.4 127,914 - -0.1 127,914 - -0.3 127,914 - -0.5 127,914 - -0.8 127,914 - -0.5 127,923 - -0.1 127,954 + +0.3 127,987 - +1.7 127,997 + -0.4 127,998 - -0.1 128,010 - -0.7 128,010 - +0.0 128,047 + +0.6 128,047 + -0.6 128,458 - +0.2 128,460 + -0.0 128,461 - -0.2 128,461 - +0.2 128,461 - +0.3 128,461 - +1.1 128,461 - +0.2 128,461 - +0.6 128,461 - -0.5 128,491 + +1.4 128,492 - +0.4 128,492 - -0.2 128,492 - -0.4 128,494 + +0.2 128,494 + -0.2 128,495 - +0.1 128,509 + +0.8 128,509 + +0.3 128,510 - +0.3 128,518 + +0.1 128,536 + +0.7 128,572 + +1.2 128,572 + +0.0 128,573 - EX31_RS08175 0.10 -0.2 128,573 - EX31_RS08175 0.10 +0.2 128,649 + EX31_RS08175 0.22 -0.3 128,650 - EX31_RS08175 0.22 +0.4 128,749 + EX31_RS08175 0.38 +0.0 128,749 + EX31_RS08175 0.38 +1.0 128,749 + EX31_RS08175 0.38 +0.4 128,749 + EX31_RS08175 0.38 +0.0 128,749 + EX31_RS08175 0.38 +0.0 128,750 - EX31_RS08175 0.38 +0.6 128,750 - EX31_RS08175 0.38 +0.2 128,750 - EX31_RS08175 0.38 -0.0 128,750 - EX31_RS08175 0.38 +0.1 128,750 - EX31_RS08175 0.38 -0.3 128,750 - EX31_RS08175 0.38 +0.9 128,753 + EX31_RS08175 0.39 +1.2 128,753 + EX31_RS08175 0.39 -0.4 128,753 + EX31_RS08175 0.39 -0.8 128,753 + EX31_RS08175 0.39 -0.4 128,753 + EX31_RS08175 0.39 -0.6 128,753 + EX31_RS08175 0.39 +1.2 128,753 + EX31_RS08175 0.39 -0.1 128,753 + EX31_RS08175 0.39 +0.4 128,753 + EX31_RS08175 0.39 -0.3 128,753 + EX31_RS08175 0.39 -0.4 128,753 + EX31_RS08175 0.39 +0.1 128,753 + EX31_RS08175 0.39 +0.9 128,753 + EX31_RS08175 0.39 +1.3 128,753 + EX31_RS08175 0.39 +0.6 128,753 + EX31_RS08175 0.39 -0.8 128,753 + EX31_RS08175 0.39 -0.7 128,753 + EX31_RS08175 0.39 +0.2 128,753 + EX31_RS08175 0.39 +0.7 128,753 + EX31_RS08175 0.39 +0.6 128,753 + EX31_RS08175 0.39 +0.4 128,753 + EX31_RS08175 0.39 +0.2 128,753 + EX31_RS08175 0.39 +1.1 128,753 + EX31_RS08175 0.39 -0.3 128,753 + EX31_RS08175 0.39 +1.1 128,754 - EX31_RS08175 0.39 +0.4 128,754 - EX31_RS08175 0.39 +0.0 128,754 - EX31_RS08175 0.39 +0.9 128,754 - EX31_RS08175 0.39 +0.1 128,754 - EX31_RS08175 0.39 +0.6 128,754 - EX31_RS08175 0.39 +0.7 128,754 - EX31_RS08175 0.39 -0.9 128,754 - EX31_RS08175 0.39 +0.2 128,754 - EX31_RS08175 0.39 +0.5 128,754 - EX31_RS08175 0.39 +0.0 128,754 - EX31_RS08175 0.39 +0.0 128,754 - EX31_RS08175 0.39 +1.1 128,754 - EX31_RS08175 0.39 +1.1 128,754 - EX31_RS08175 0.39 -0.6 128,754 - EX31_RS08175 0.39 -0.2 128,791 + EX31_RS08175 0.45 -0.8 128,791 + EX31_RS08175 0.45 +0.4 128,791 + EX31_RS08175 0.45 -1.6 128,796 - EX31_RS08175 0.45 +0.0 128,796 - EX31_RS08175 0.45 +0.4 128,796 - EX31_RS08175 0.45 +1.0 128,969 + EX31_RS08175 0.73 -1.4 128,969 + EX31_RS08175 0.73 +0.1 128,969 + EX31_RS08175 0.73 -0.0 128,970 - EX31_RS08175 0.73 +1.2 128,970 - EX31_RS08175 0.73 +1.0 128,970 - EX31_RS08175 0.73 +0.0 128,970 - EX31_RS08175 0.73 +0.2 129,049 + EX31_RS08175 0.86 +0.1 129,049 + EX31_RS08175 0.86 +0.9 129,050 - EX31_RS08175 0.86 -0.4 129,050 - EX31_RS08175 0.86 -0.5 129,091 + +1.1 129,092 - -0.5 129,092 - -0.2 129,127 + +0.2 129,127 + +0.3 129,127 + +0.5 129,128 - -0.8 129,137 + +1.0 129,137 + -0.1 129,137 + +0.2 129,138 - +0.6 129,138 - +0.9 129,138 - -0.7 129,144 + -0.2 129,164 + +0.4 129,164 + -0.3 129,266 + -0.6 129,266 + -0.8 129,266 + -0.5 129,266 + -0.7 129,266 + -0.2 129,267 - -0.7 129,267 - +0.8 129,267 - -0.3 129,267 - +0.8 129,267 - +0.9 129,267 - -0.1 129,267 - +0.3 129,267 - +0.8 129,267 - -0.0 129,267 - -1.4 129,267 - +1.4 129,274 + +1.1 129,274 + +0.2 129,274 + -1.2 129,274 + +0.1 129,274 + -1.0 129,274 + -0.3 129,274 + -0.6 129,274 + -1.0 129,274 + -0.1 129,274 + -1.6 129,275 - +0.0 129,275 - +0.5 129,275 - -0.4 129,275 - +0.1 129,275 - -0.1 129,275 - +1.3 129,275 - -0.1 129,275 - -2.3 129,276 + +0.5 129,276 + +0.6 129,276 + +0.2 129,276 + -0.3 129,276 + -1.8 129,276 + -1.0 129,277 - +1.3 129,277 - -0.5 129,277 - -0.1 129,277 - -0.1 129,277 - -0.4 129,277 - -0.2 129,277 - -0.0 129,277 - +1.1 129,277 - -0.6 129,277 - +0.5 129,277 - +1.0
Or see this region's nucleotide sequence