Strain Fitness in Rahnella sp. WP5 around EX31_RS03770

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS03765 and EX31_RS03770 are separated by 86 nucleotidesEX31_RS03770 and EX31_RS03775 overlap by 11 nucleotides EX31_RS03765: EX31_RS03765 - LPS assembly protein LptD, at 260,405 to 262,780 _RS03765 EX31_RS03770: EX31_RS03770 - peptidylprolyl isomerase SurA, at 262,867 to 264,162 _RS03770 EX31_RS03775: EX31_RS03775 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 264,152 to 265,159 _RS03775 Position (kb) 262 263 264 265Strain fitness (log2 ratio) -3 -2 -1 0 1at 262.699 kb on + strandat 262.699 kb on + strandat 262.711 kb on + strandat 262.755 kb on + strandat 262.755 kb on + strandat 262.755 kb on + strandat 262.763 kb on + strandat 262.778 kb on + strandat 262.944 kb on + strandat 262.976 kb on + strandat 262.995 kb on + strandat 262.995 kb on + strandat 262.995 kb on + strandat 262.995 kb on + strandat 262.995 kb on + strandat 262.995 kb on + strandat 262.995 kb on + strandat 262.995 kb on + strandat 262.995 kb on + strandat 262.995 kb on + strandat 262.995 kb on + strandat 262.995 kb on + strandat 263.004 kb on + strand, within EX31_RS03770at 263.157 kb on + strand, within EX31_RS03770at 263.224 kb on + strand, within EX31_RS03770at 263.224 kb on + strand, within EX31_RS03770at 263.239 kb on + strand, within EX31_RS03770at 263.239 kb on + strand, within EX31_RS03770at 263.239 kb on + strand, within EX31_RS03770at 263.239 kb on + strand, within EX31_RS03770at 263.239 kb on + strand, within EX31_RS03770at 263.248 kb on + strand, within EX31_RS03770at 263.248 kb on + strand, within EX31_RS03770at 263.248 kb on + strand, within EX31_RS03770at 263.288 kb on + strand, within EX31_RS03770at 263.288 kb on + strand, within EX31_RS03770at 263.288 kb on + strand, within EX31_RS03770at 263.292 kb on + strand, within EX31_RS03770at 263.292 kb on + strand, within EX31_RS03770at 263.292 kb on + strand, within EX31_RS03770at 263.292 kb on + strand, within EX31_RS03770at 263.292 kb on + strand, within EX31_RS03770at 263.321 kb on + strand, within EX31_RS03770at 263.521 kb on + strand, within EX31_RS03770at 263.521 kb on + strand, within EX31_RS03770at 263.521 kb on + strand, within EX31_RS03770at 263.521 kb on + strand, within EX31_RS03770at 263.697 kb on + strand, within EX31_RS03770at 263.756 kb on + strand, within EX31_RS03770at 263.808 kb on + strand, within EX31_RS03770at 263.808 kb on + strand, within EX31_RS03770at 263.808 kb on + strand, within EX31_RS03770at 263.808 kb on + strand, within EX31_RS03770at 263.808 kb on + strand, within EX31_RS03770at 263.871 kb on + strand, within EX31_RS03770at 263.888 kb on + strand, within EX31_RS03770at 263.907 kb on + strand, within EX31_RS03770at 263.907 kb on + strand, within EX31_RS03770at 263.907 kb on + strand, within EX31_RS03770at 263.907 kb on + strand, within EX31_RS03770at 263.907 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 263.911 kb on + strand, within EX31_RS03770at 264.006 kb on + strand, within EX31_RS03770at 264.006 kb on + strand, within EX31_RS03770at 264.027 kb on + strand, within EX31_RS03770at 264.058 kb on + strandat 264.058 kb on + strandat 264.063 kb on + strandat 264.130 kb on + strandat 264.130 kb on + strandat 264.130 kb on + strandat 264.130 kb on + strandat 264.141 kb on + strandat 264.163 kb on + strandat 264.163 kb on + strandat 264.264 kb on + strand, within EX31_RS03775at 264.264 kb on + strand, within EX31_RS03775at 264.691 kb on + strand, within EX31_RS03775at 264.757 kb on + strand, within EX31_RS03775at 264.773 kb on + strand, within EX31_RS03775at 264.838 kb on + strand, within EX31_RS03775at 264.956 kb on + strand, within EX31_RS03775at 264.956 kb on + strand, within EX31_RS03775at 264.981 kb on + strand, within EX31_RS03775at 264.981 kb on + strand, within EX31_RS03775at 264.986 kb on + strand, within EX31_RS03775at 265.012 kb on + strand, within EX31_RS03775at 265.141 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
262,699 + +0.4
262,699 + +0.0
262,711 + +0.2
262,755 + +0.5
262,755 + -1.4
262,755 + +1.0
262,763 + +0.4
262,778 + -0.4
262,944 + -1.5
262,976 + -1.2
262,995 + -1.6
262,995 + -1.8
262,995 + -1.7
262,995 + -1.3
262,995 + -2.3
262,995 + -2.3
262,995 + -0.9
262,995 + -0.9
262,995 + +0.2
262,995 + -0.7
262,995 + -1.4
262,995 + -0.5
263,004 + EX31_RS03770 0.11 -1.2
263,157 + EX31_RS03770 0.22 -2.8
263,224 + EX31_RS03770 0.28 -0.5
263,224 + EX31_RS03770 0.28 -0.8
263,239 + EX31_RS03770 0.29 -1.6
263,239 + EX31_RS03770 0.29 -1.6
263,239 + EX31_RS03770 0.29 -2.0
263,239 + EX31_RS03770 0.29 -0.9
263,239 + EX31_RS03770 0.29 -0.8
263,248 + EX31_RS03770 0.29 -1.2
263,248 + EX31_RS03770 0.29 -2.9
263,248 + EX31_RS03770 0.29 -1.6
263,288 + EX31_RS03770 0.32 -1.6
263,288 + EX31_RS03770 0.32 -0.1
263,288 + EX31_RS03770 0.32 -0.7
263,292 + EX31_RS03770 0.33 -0.5
263,292 + EX31_RS03770 0.33 -1.2
263,292 + EX31_RS03770 0.33 -0.8
263,292 + EX31_RS03770 0.33 -0.5
263,292 + EX31_RS03770 0.33 -2.0
263,321 + EX31_RS03770 0.35 -1.4
263,521 + EX31_RS03770 0.50 -1.3
263,521 + EX31_RS03770 0.50 -2.4
263,521 + EX31_RS03770 0.50 -0.8
263,521 + EX31_RS03770 0.50 -2.4
263,697 + EX31_RS03770 0.64 -1.3
263,756 + EX31_RS03770 0.69 -1.0
263,808 + EX31_RS03770 0.73 -0.8
263,808 + EX31_RS03770 0.73 -0.9
263,808 + EX31_RS03770 0.73 -0.4
263,808 + EX31_RS03770 0.73 -2.1
263,808 + EX31_RS03770 0.73 -0.9
263,871 + EX31_RS03770 0.77 -1.9
263,888 + EX31_RS03770 0.79 -2.1
263,907 + EX31_RS03770 0.80 -0.7
263,907 + EX31_RS03770 0.80 -0.3
263,907 + EX31_RS03770 0.80 -0.3
263,907 + EX31_RS03770 0.80 -0.3
263,907 + EX31_RS03770 0.80 +0.0
263,911 + EX31_RS03770 0.81 -0.3
263,911 + EX31_RS03770 0.81 -1.0
263,911 + EX31_RS03770 0.81 -0.3
263,911 + EX31_RS03770 0.81 -1.4
263,911 + EX31_RS03770 0.81 -0.7
263,911 + EX31_RS03770 0.81 -0.2
263,911 + EX31_RS03770 0.81 -0.8
263,911 + EX31_RS03770 0.81 -1.1
264,006 + EX31_RS03770 0.88 -0.3
264,006 + EX31_RS03770 0.88 +0.8
264,027 + EX31_RS03770 0.90 -0.3
264,058 + -1.0
264,058 + -0.2
264,063 + -0.5
264,130 + -1.2
264,130 + -1.3
264,130 + -0.6
264,130 + -0.5
264,141 + +0.3
264,163 + -1.5
264,163 + -1.2
264,264 + EX31_RS03775 0.11 -3.5
264,264 + EX31_RS03775 0.11 -0.4
264,691 + EX31_RS03775 0.53 -1.7
264,757 + EX31_RS03775 0.60 -2.1
264,773 + EX31_RS03775 0.62 -1.9
264,838 + EX31_RS03775 0.68 -1.7
264,956 + EX31_RS03775 0.80 -2.8
264,956 + EX31_RS03775 0.80 -1.5
264,981 + EX31_RS03775 0.82 +0.1
264,981 + EX31_RS03775 0.82 -1.9
264,986 + EX31_RS03775 0.83 -1.7
265,012 + EX31_RS03775 0.85 -1.0
265,141 + -0.7

Or see this region's nucleotide sequence