Strain Fitness in Rahnella sp. WP5 around EX31_RS02400

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02390 and EX31_RS02395 are separated by 134 nucleotidesEX31_RS02395 and EX31_RS02400 are separated by 71 nucleotidesEX31_RS02400 and EX31_RS02405 are separated by 195 nucleotides EX31_RS02390: EX31_RS02390 - steroid Delta-isomerase, at 509,364 to 509,699 _RS02390 EX31_RS02395: EX31_RS02395 - hypothetical protein, at 509,834 to 510,193 _RS02395 EX31_RS02400: EX31_RS02400 - MetQ/NlpA family lipoprotein, at 510,265 to 511,077 _RS02400 EX31_RS02405: EX31_RS02405 - MFS transporter, at 511,273 to 512,484 _RS02405 Position (kb) 510 511 512Strain fitness (log2 ratio) -2 -1 0 1 2at 509.361 kb on + strandat 509.361 kb on + strandat 509.361 kb on + strandat 509.474 kb on + strand, within EX31_RS02390at 509.488 kb on + strand, within EX31_RS02390at 509.517 kb on + strand, within EX31_RS02390at 509.519 kb on + strand, within EX31_RS02390at 509.549 kb on - strand, within EX31_RS02390at 509.757 kb on + strandat 509.757 kb on + strandat 509.758 kb on - strandat 509.786 kb on + strandat 509.786 kb on + strandat 509.787 kb on - strandat 509.787 kb on - strandat 509.787 kb on - strandat 509.801 kb on - strandat 509.809 kb on + strandat 509.810 kb on - strandat 509.839 kb on + strandat 509.908 kb on + strand, within EX31_RS02395at 509.951 kb on + strand, within EX31_RS02395at 509.951 kb on + strand, within EX31_RS02395at 509.951 kb on + strand, within EX31_RS02395at 509.952 kb on - strand, within EX31_RS02395at 509.983 kb on + strand, within EX31_RS02395at 510.002 kb on + strand, within EX31_RS02395at 510.002 kb on + strand, within EX31_RS02395at 510.002 kb on + strand, within EX31_RS02395at 510.002 kb on + strand, within EX31_RS02395at 510.003 kb on - strand, within EX31_RS02395at 510.004 kb on + strand, within EX31_RS02395at 510.004 kb on + strand, within EX31_RS02395at 510.004 kb on + strand, within EX31_RS02395at 510.004 kb on + strand, within EX31_RS02395at 510.004 kb on + strand, within EX31_RS02395at 510.004 kb on + strand, within EX31_RS02395at 510.004 kb on + strand, within EX31_RS02395at 510.005 kb on - strand, within EX31_RS02395at 510.005 kb on - strand, within EX31_RS02395at 510.005 kb on - strand, within EX31_RS02395at 510.016 kb on + strand, within EX31_RS02395at 510.035 kb on + strand, within EX31_RS02395at 510.035 kb on + strand, within EX31_RS02395at 510.035 kb on + strand, within EX31_RS02395at 510.035 kb on + strand, within EX31_RS02395at 510.045 kb on - strand, within EX31_RS02395at 510.067 kb on + strand, within EX31_RS02395at 510.102 kb on + strand, within EX31_RS02395at 510.121 kb on + strand, within EX31_RS02395at 510.121 kb on + strand, within EX31_RS02395at 510.121 kb on + strand, within EX31_RS02395at 510.121 kb on + strand, within EX31_RS02395at 510.121 kb on + strand, within EX31_RS02395at 510.122 kb on - strand, within EX31_RS02395at 510.136 kb on + strand, within EX31_RS02395at 510.154 kb on + strand, within EX31_RS02395at 510.188 kb on - strandat 510.191 kb on + strandat 510.293 kb on + strandat 510.293 kb on + strandat 510.294 kb on - strandat 510.294 kb on - strandat 510.298 kb on - strandat 510.298 kb on - strandat 510.373 kb on - strand, within EX31_RS02400at 510.393 kb on + strand, within EX31_RS02400at 510.394 kb on - strand, within EX31_RS02400at 510.401 kb on + strand, within EX31_RS02400at 510.402 kb on - strand, within EX31_RS02400at 510.414 kb on + strand, within EX31_RS02400at 510.468 kb on - strand, within EX31_RS02400at 510.468 kb on - strand, within EX31_RS02400at 510.475 kb on - strand, within EX31_RS02400at 510.599 kb on - strand, within EX31_RS02400at 510.719 kb on - strand, within EX31_RS02400at 510.909 kb on + strand, within EX31_RS02400at 510.909 kb on + strand, within EX31_RS02400at 510.911 kb on + strand, within EX31_RS02400at 510.912 kb on - strand, within EX31_RS02400at 510.912 kb on - strand, within EX31_RS02400at 510.912 kb on - strand, within EX31_RS02400at 510.912 kb on - strand, within EX31_RS02400at 510.912 kb on - strand, within EX31_RS02400at 510.912 kb on - strand, within EX31_RS02400at 510.981 kb on + strand, within EX31_RS02400at 510.981 kb on + strand, within EX31_RS02400at 510.982 kb on - strand, within EX31_RS02400at 511.043 kb on - strandat 511.167 kb on + strandat 511.186 kb on - strandat 511.186 kb on - strandat 511.215 kb on - strandat 511.265 kb on + strandat 511.266 kb on - strandat 511.291 kb on + strandat 511.292 kb on - strandat 511.621 kb on - strand, within EX31_RS02405at 511.629 kb on + strand, within EX31_RS02405at 511.662 kb on + strand, within EX31_RS02405at 511.662 kb on + strand, within EX31_RS02405at 511.663 kb on - strand, within EX31_RS02405at 511.685 kb on - strand, within EX31_RS02405at 511.688 kb on - strand, within EX31_RS02405at 511.725 kb on + strand, within EX31_RS02405at 511.772 kb on + strand, within EX31_RS02405at 511.773 kb on - strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.776 kb on + strand, within EX31_RS02405at 511.777 kb on - strand, within EX31_RS02405at 511.777 kb on - strand, within EX31_RS02405at 511.777 kb on - strand, within EX31_RS02405at 511.777 kb on - strand, within EX31_RS02405at 511.777 kb on - strand, within EX31_RS02405at 511.777 kb on - strand, within EX31_RS02405at 511.777 kb on - strand, within EX31_RS02405at 511.777 kb on - strand, within EX31_RS02405at 511.777 kb on - strand, within EX31_RS02405at 511.778 kb on + strand, within EX31_RS02405at 511.778 kb on + strand, within EX31_RS02405at 511.778 kb on + strand, within EX31_RS02405at 511.804 kb on - strand, within EX31_RS02405at 511.807 kb on + strand, within EX31_RS02405at 511.808 kb on - strand, within EX31_RS02405at 511.948 kb on - strand, within EX31_RS02405at 511.953 kb on + strand, within EX31_RS02405at 511.954 kb on - strand, within EX31_RS02405at 511.954 kb on - strand, within EX31_RS02405at 511.954 kb on - strand, within EX31_RS02405at 511.987 kb on - strand, within EX31_RS02405

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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509,361 + +0.5
509,361 + -0.3
509,361 + -2.7
509,474 + EX31_RS02390 0.33 -0.8
509,488 + EX31_RS02390 0.37 -0.0
509,517 + EX31_RS02390 0.46 +1.2
509,519 + EX31_RS02390 0.46 -1.3
509,549 - EX31_RS02390 0.55 +0.5
509,757 + +0.2
509,757 + -0.1
509,758 - +0.2
509,786 + -0.2
509,786 + +0.2
509,787 - +1.1
509,787 - +0.9
509,787 - -1.0
509,801 - +1.6
509,809 + +0.2
509,810 - +0.1
509,839 + -0.1
509,908 + EX31_RS02395 0.21 -1.6
509,951 + EX31_RS02395 0.33 +0.2
509,951 + EX31_RS02395 0.33 -0.4
509,951 + EX31_RS02395 0.33 +1.0
509,952 - EX31_RS02395 0.33 +0.8
509,983 + EX31_RS02395 0.41 -0.5
510,002 + EX31_RS02395 0.47 -1.0
510,002 + EX31_RS02395 0.47 +0.9
510,002 + EX31_RS02395 0.47 -0.2
510,002 + EX31_RS02395 0.47 +0.6
510,003 - EX31_RS02395 0.47 -1.1
510,004 + EX31_RS02395 0.47 +0.2
510,004 + EX31_RS02395 0.47 +0.2
510,004 + EX31_RS02395 0.47 +0.3
510,004 + EX31_RS02395 0.47 +1.8
510,004 + EX31_RS02395 0.47 -0.8
510,004 + EX31_RS02395 0.47 -0.5
510,004 + EX31_RS02395 0.47 +1.5
510,005 - EX31_RS02395 0.47 -1.4
510,005 - EX31_RS02395 0.47 -0.6
510,005 - EX31_RS02395 0.47 +0.3
510,016 + EX31_RS02395 0.51 +0.9
510,035 + EX31_RS02395 0.56 +0.2
510,035 + EX31_RS02395 0.56 +0.1
510,035 + EX31_RS02395 0.56 +0.6
510,035 + EX31_RS02395 0.56 +0.3
510,045 - EX31_RS02395 0.59 +1.1
510,067 + EX31_RS02395 0.65 +0.3
510,102 + EX31_RS02395 0.74 +0.1
510,121 + EX31_RS02395 0.80 -1.0
510,121 + EX31_RS02395 0.80 +1.3
510,121 + EX31_RS02395 0.80 +0.6
510,121 + EX31_RS02395 0.80 +0.2
510,121 + EX31_RS02395 0.80 +0.7
510,122 - EX31_RS02395 0.80 -0.7
510,136 + EX31_RS02395 0.84 +0.8
510,154 + EX31_RS02395 0.89 -0.6
510,188 - +0.7
510,191 + +0.3
510,293 + -0.6
510,293 + +0.7
510,294 - +0.6
510,294 - +0.0
510,298 - -0.1
510,298 - -0.1
510,373 - EX31_RS02400 0.13 +0.3
510,393 + EX31_RS02400 0.16 -0.5
510,394 - EX31_RS02400 0.16 +0.3
510,401 + EX31_RS02400 0.17 -0.5
510,402 - EX31_RS02400 0.17 -0.4
510,414 + EX31_RS02400 0.18 -0.7
510,468 - EX31_RS02400 0.25 +0.4
510,468 - EX31_RS02400 0.25 +0.8
510,475 - EX31_RS02400 0.26 +0.5
510,599 - EX31_RS02400 0.41 +1.8
510,719 - EX31_RS02400 0.56 -0.3
510,909 + EX31_RS02400 0.79 -1.0
510,909 + EX31_RS02400 0.79 +0.2
510,911 + EX31_RS02400 0.79 +1.0
510,912 - EX31_RS02400 0.80 -1.0
510,912 - EX31_RS02400 0.80 -1.1
510,912 - EX31_RS02400 0.80 +0.9
510,912 - EX31_RS02400 0.80 -1.8
510,912 - EX31_RS02400 0.80 -2.3
510,912 - EX31_RS02400 0.80 -0.6
510,981 + EX31_RS02400 0.88 +0.1
510,981 + EX31_RS02400 0.88 +0.5
510,982 - EX31_RS02400 0.88 +0.8
511,043 - -0.9
511,167 + +0.4
511,186 - +0.1
511,186 - -0.3
511,215 - -1.0
511,265 + -2.0
511,266 - -1.7
511,291 + +0.1
511,292 - -0.9
511,621 - EX31_RS02405 0.29 -1.9
511,629 + EX31_RS02405 0.29 -0.4
511,662 + EX31_RS02405 0.32 +0.1
511,662 + EX31_RS02405 0.32 -0.3
511,663 - EX31_RS02405 0.32 +0.6
511,685 - EX31_RS02405 0.34 -1.1
511,688 - EX31_RS02405 0.34 +0.1
511,725 + EX31_RS02405 0.37 -0.2
511,772 + EX31_RS02405 0.41 +0.3
511,773 - EX31_RS02405 0.41 +1.6
511,776 + EX31_RS02405 0.42 -1.6
511,776 + EX31_RS02405 0.42 +1.0
511,776 + EX31_RS02405 0.42 -2.1
511,776 + EX31_RS02405 0.42 +0.6
511,776 + EX31_RS02405 0.42 -0.3
511,776 + EX31_RS02405 0.42 +1.2
511,776 + EX31_RS02405 0.42 -0.8
511,776 + EX31_RS02405 0.42 +0.0
511,776 + EX31_RS02405 0.42 -0.3
511,776 + EX31_RS02405 0.42 +1.2
511,776 + EX31_RS02405 0.42 -0.1
511,776 + EX31_RS02405 0.42 +0.1
511,776 + EX31_RS02405 0.42 -1.4
511,776 + EX31_RS02405 0.42 -0.6
511,776 + EX31_RS02405 0.42 -2.4
511,777 - EX31_RS02405 0.42 -1.2
511,777 - EX31_RS02405 0.42 -0.4
511,777 - EX31_RS02405 0.42 +0.3
511,777 - EX31_RS02405 0.42 +0.9
511,777 - EX31_RS02405 0.42 -1.0
511,777 - EX31_RS02405 0.42 +1.1
511,777 - EX31_RS02405 0.42 -1.0
511,777 - EX31_RS02405 0.42 +0.8
511,777 - EX31_RS02405 0.42 -1.1
511,778 + EX31_RS02405 0.42 -1.3
511,778 + EX31_RS02405 0.42 +0.0
511,778 + EX31_RS02405 0.42 +0.6
511,804 - EX31_RS02405 0.44 -0.4
511,807 + EX31_RS02405 0.44 +1.0
511,808 - EX31_RS02405 0.44 -0.2
511,948 - EX31_RS02405 0.56 -1.4
511,953 + EX31_RS02405 0.56 +0.1
511,954 - EX31_RS02405 0.56 +0.8
511,954 - EX31_RS02405 0.56 +1.4
511,954 - EX31_RS02405 0.56 -0.6
511,987 - EX31_RS02405 0.59 -0.0

Or see this region's nucleotide sequence