Strain Fitness in Rahnella sp. WP5 around EX31_RS00950

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00945 and EX31_RS00950 overlap by 4 nucleotidesEX31_RS00950 and EX31_RS00955 are separated by 29 nucleotidesEX31_RS00955 and EX31_RS00960 are separated by 52 nucleotides EX31_RS00945: EX31_RS00945 - type VI secretion system contractile sheath small subunit, at 205,472 to 205,951 _RS00945 EX31_RS00950: EX31_RS00950 - type VI secretion system contractile sheath large subunit, at 205,948 to 207,429 _RS00950 EX31_RS00955: EX31_RS00955 - type VI secretion system tube protein Hcp, at 207,459 to 207,950 _RS00955 EX31_RS00960: EX31_RS00960 - hypothetical protein, at 208,003 to 208,419 _RS00960 Position (kb) 205 206 207 208Strain fitness (log2 ratio) -2 -1 0 1 2at 204.961 kb on + strandat 204.962 kb on - strandat 204.962 kb on - strandat 205.007 kb on + strandat 205.009 kb on + strandat 205.009 kb on + strandat 205.009 kb on + strandat 205.010 kb on - strandat 205.010 kb on - strandat 205.010 kb on - strandat 205.010 kb on - strandat 205.010 kb on - strandat 205.070 kb on - strandat 205.075 kb on + strandat 205.076 kb on - strandat 205.097 kb on - strandat 205.105 kb on - strandat 205.105 kb on - strandat 205.137 kb on - strandat 205.143 kb on + strandat 205.143 kb on + strandat 205.146 kb on + strandat 205.146 kb on + strandat 205.147 kb on - strandat 205.259 kb on + strandat 205.489 kb on + strandat 205.569 kb on + strand, within EX31_RS00945at 205.569 kb on + strand, within EX31_RS00945at 205.569 kb on + strand, within EX31_RS00945at 205.603 kb on + strand, within EX31_RS00945at 205.660 kb on + strand, within EX31_RS00945at 205.663 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.711 kb on + strand, within EX31_RS00945at 205.900 kb on - strand, within EX31_RS00945at 205.902 kb on + strand, within EX31_RS00945at 205.944 kb on + strandat 205.945 kb on - strandat 206.002 kb on + strandat 206.023 kb on - strandat 206.055 kb on + strandat 206.056 kb on - strandat 206.058 kb on + strandat 206.329 kb on - strand, within EX31_RS00950at 206.374 kb on + strand, within EX31_RS00950at 206.374 kb on + strand, within EX31_RS00950at 206.375 kb on - strand, within EX31_RS00950at 206.387 kb on - strand, within EX31_RS00950at 206.410 kb on + strand, within EX31_RS00950at 206.410 kb on + strand, within EX31_RS00950at 206.445 kb on + strand, within EX31_RS00950at 206.606 kb on - strand, within EX31_RS00950at 206.648 kb on - strand, within EX31_RS00950at 206.648 kb on - strand, within EX31_RS00950at 206.689 kb on + strand, within EX31_RS00950at 206.690 kb on - strand, within EX31_RS00950at 206.764 kb on + strand, within EX31_RS00950at 206.764 kb on + strand, within EX31_RS00950at 206.764 kb on + strand, within EX31_RS00950at 206.785 kb on + strand, within EX31_RS00950at 206.786 kb on - strand, within EX31_RS00950at 206.893 kb on + strand, within EX31_RS00950at 206.894 kb on - strand, within EX31_RS00950at 206.998 kb on + strand, within EX31_RS00950at 207.112 kb on + strand, within EX31_RS00950at 207.113 kb on - strand, within EX31_RS00950at 207.113 kb on - strand, within EX31_RS00950at 207.114 kb on + strand, within EX31_RS00950at 207.114 kb on + strand, within EX31_RS00950at 207.114 kb on + strand, within EX31_RS00950at 207.114 kb on + strand, within EX31_RS00950at 207.115 kb on - strand, within EX31_RS00950at 207.115 kb on - strand, within EX31_RS00950at 207.229 kb on + strand, within EX31_RS00950at 207.230 kb on - strand, within EX31_RS00950at 207.246 kb on + strand, within EX31_RS00950at 207.251 kb on + strand, within EX31_RS00950at 207.251 kb on + strand, within EX31_RS00950at 207.251 kb on + strand, within EX31_RS00950at 207.251 kb on + strand, within EX31_RS00950at 207.252 kb on - strand, within EX31_RS00950at 207.252 kb on - strand, within EX31_RS00950at 207.347 kb on - strandat 207.350 kb on + strandat 207.427 kb on + strandat 207.427 kb on + strandat 207.431 kb on + strandat 207.432 kb on - strandat 207.435 kb on + strandat 207.435 kb on + strandat 207.436 kb on - strandat 207.456 kb on - strandat 207.508 kb on + strandat 207.508 kb on + strandat 207.509 kb on - strand, within EX31_RS00955at 207.656 kb on + strand, within EX31_RS00955at 207.656 kb on + strand, within EX31_RS00955at 207.657 kb on - strand, within EX31_RS00955at 207.657 kb on - strand, within EX31_RS00955at 207.677 kb on + strand, within EX31_RS00955at 207.677 kb on + strand, within EX31_RS00955at 207.768 kb on + strand, within EX31_RS00955at 207.768 kb on + strand, within EX31_RS00955at 207.847 kb on + strand, within EX31_RS00955at 207.848 kb on - strand, within EX31_RS00955at 207.872 kb on + strand, within EX31_RS00955at 207.941 kb on + strandat 207.988 kb on + strandat 207.999 kb on - strandat 208.100 kb on + strand, within EX31_RS00960at 208.173 kb on + strand, within EX31_RS00960at 208.173 kb on + strand, within EX31_RS00960at 208.173 kb on + strand, within EX31_RS00960at 208.207 kb on - strand, within EX31_RS00960at 208.233 kb on + strand, within EX31_RS00960at 208.259 kb on + strand, within EX31_RS00960at 208.259 kb on + strand, within EX31_RS00960at 208.338 kb on + strand, within EX31_RS00960

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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204,961 + -0.6
204,962 - -0.0
204,962 - -0.3
205,007 + -0.3
205,009 + -0.0
205,009 + -0.8
205,009 + -0.9
205,010 - -0.1
205,010 - -0.7
205,010 - -1.6
205,010 - +0.1
205,010 - -1.5
205,070 - +0.4
205,075 + +0.0
205,076 - -0.7
205,097 - -0.8
205,105 - -1.3
205,105 - +0.2
205,137 - -1.3
205,143 + +1.1
205,143 + +0.4
205,146 + +0.3
205,146 + +0.1
205,147 - -1.0
205,259 + -1.1
205,489 + -0.0
205,569 + EX31_RS00945 0.20 -0.8
205,569 + EX31_RS00945 0.20 -2.0
205,569 + EX31_RS00945 0.20 -0.2
205,603 + EX31_RS00945 0.27 -1.8
205,660 + EX31_RS00945 0.39 -0.6
205,663 + EX31_RS00945 0.40 -0.1
205,711 + EX31_RS00945 0.50 -1.0
205,711 + EX31_RS00945 0.50 +0.5
205,711 + EX31_RS00945 0.50 -0.0
205,711 + EX31_RS00945 0.50 +1.3
205,711 + EX31_RS00945 0.50 +1.4
205,900 - EX31_RS00945 0.89 -2.0
205,902 + EX31_RS00945 0.90 +0.1
205,944 + -0.8
205,945 - -1.5
206,002 + -2.0
206,023 - -1.1
206,055 + -1.7
206,056 - +0.8
206,058 + +0.9
206,329 - EX31_RS00950 0.26 -2.1
206,374 + EX31_RS00950 0.29 -0.5
206,374 + EX31_RS00950 0.29 -0.6
206,375 - EX31_RS00950 0.29 +0.6
206,387 - EX31_RS00950 0.30 -1.9
206,410 + EX31_RS00950 0.31 +0.6
206,410 + EX31_RS00950 0.31 -0.7
206,445 + EX31_RS00950 0.34 -1.3
206,606 - EX31_RS00950 0.44 -1.2
206,648 - EX31_RS00950 0.47 -0.9
206,648 - EX31_RS00950 0.47 -1.8
206,689 + EX31_RS00950 0.50 -0.4
206,690 - EX31_RS00950 0.50 +0.6
206,764 + EX31_RS00950 0.55 -0.9
206,764 + EX31_RS00950 0.55 -0.1
206,764 + EX31_RS00950 0.55 +1.6
206,785 + EX31_RS00950 0.56 -0.9
206,786 - EX31_RS00950 0.57 -0.2
206,893 + EX31_RS00950 0.64 -1.4
206,894 - EX31_RS00950 0.64 +0.2
206,998 + EX31_RS00950 0.71 +1.1
207,112 + EX31_RS00950 0.79 -0.0
207,113 - EX31_RS00950 0.79 -2.3
207,113 - EX31_RS00950 0.79 -0.5
207,114 + EX31_RS00950 0.79 -1.8
207,114 + EX31_RS00950 0.79 -0.6
207,114 + EX31_RS00950 0.79 +0.7
207,114 + EX31_RS00950 0.79 -0.7
207,115 - EX31_RS00950 0.79 -0.5
207,115 - EX31_RS00950 0.79 -0.3
207,229 + EX31_RS00950 0.86 -0.6
207,230 - EX31_RS00950 0.87 +0.8
207,246 + EX31_RS00950 0.88 -1.5
207,251 + EX31_RS00950 0.88 +0.2
207,251 + EX31_RS00950 0.88 -0.2
207,251 + EX31_RS00950 0.88 +0.4
207,251 + EX31_RS00950 0.88 +1.8
207,252 - EX31_RS00950 0.88 -0.2
207,252 - EX31_RS00950 0.88 -0.5
207,347 - -0.7
207,350 + +0.8
207,427 + +0.5
207,427 + -0.2
207,431 + +0.1
207,432 - +0.4
207,435 + -0.7
207,435 + -0.1
207,436 - -2.3
207,456 - -0.4
207,508 + +0.1
207,508 + -1.0
207,509 - EX31_RS00955 0.10 -0.8
207,656 + EX31_RS00955 0.40 -0.1
207,656 + EX31_RS00955 0.40 -0.9
207,657 - EX31_RS00955 0.40 -1.2
207,657 - EX31_RS00955 0.40 -1.9
207,677 + EX31_RS00955 0.44 +0.9
207,677 + EX31_RS00955 0.44 +1.9
207,768 + EX31_RS00955 0.63 -1.1
207,768 + EX31_RS00955 0.63 +0.5
207,847 + EX31_RS00955 0.79 -1.1
207,848 - EX31_RS00955 0.79 +0.1
207,872 + EX31_RS00955 0.84 -1.4
207,941 + +0.3
207,988 + -0.2
207,999 - +1.6
208,100 + EX31_RS00960 0.23 +0.5
208,173 + EX31_RS00960 0.41 +1.3
208,173 + EX31_RS00960 0.41 +1.1
208,173 + EX31_RS00960 0.41 -0.3
208,207 - EX31_RS00960 0.49 -0.5
208,233 + EX31_RS00960 0.55 -0.3
208,259 + EX31_RS00960 0.61 +1.0
208,259 + EX31_RS00960 0.61 -0.4
208,338 + EX31_RS00960 0.80 -0.6

Or see this region's nucleotide sequence