Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23690 and EX31_RS23695 are separated by 128 nucleotides EX31_RS23695 and EX31_RS23700 are separated by 3 nucleotides
EX31_RS23690: EX31_RS23690 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 502,491 to 503,768
_RS23690
EX31_RS23695: EX31_RS23695 - biotin synthase BioB, at 503,897 to 504,934
_RS23695
EX31_RS23700: EX31_RS23700 - 8-amino-7-oxononanoate synthase, at 504,938 to 506,089
_RS23700
Position (kb)
503
504
505 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 503.057 kb on - strand, within EX31_RS23690 at 503.057 kb on - strand, within EX31_RS23690 at 503.068 kb on - strand, within EX31_RS23690 at 503.073 kb on - strand, within EX31_RS23690 at 503.073 kb on - strand, within EX31_RS23690 at 503.073 kb on - strand, within EX31_RS23690 at 503.073 kb on - strand, within EX31_RS23690 at 503.085 kb on - strand, within EX31_RS23690 at 503.089 kb on + strand, within EX31_RS23690 at 503.090 kb on - strand, within EX31_RS23690 at 503.090 kb on - strand, within EX31_RS23690 at 503.101 kb on + strand, within EX31_RS23690 at 503.102 kb on - strand, within EX31_RS23690 at 503.139 kb on + strand, within EX31_RS23690 at 503.140 kb on - strand, within EX31_RS23690 at 503.140 kb on - strand, within EX31_RS23690 at 503.266 kb on + strand, within EX31_RS23690 at 503.266 kb on + strand, within EX31_RS23690 at 503.275 kb on + strand, within EX31_RS23690 at 503.276 kb on - strand, within EX31_RS23690 at 503.276 kb on - strand, within EX31_RS23690 at 503.393 kb on - strand, within EX31_RS23690 at 503.415 kb on + strand, within EX31_RS23690 at 503.415 kb on + strand, within EX31_RS23690 at 503.415 kb on + strand, within EX31_RS23690 at 503.416 kb on - strand, within EX31_RS23690 at 503.416 kb on - strand, within EX31_RS23690 at 503.416 kb on - strand, within EX31_RS23690 at 503.482 kb on - strand, within EX31_RS23690 at 503.593 kb on + strand, within EX31_RS23690 at 503.593 kb on + strand, within EX31_RS23690 at 503.594 kb on - strand, within EX31_RS23690 at 503.594 kb on - strand, within EX31_RS23690 at 503.711 kb on + strand at 503.711 kb on + strand at 503.711 kb on + strand at 503.712 kb on - strand at 503.712 kb on - strand at 503.712 kb on - strand at 503.712 kb on - strand at 503.717 kb on + strand at 503.717 kb on + strand at 503.717 kb on + strand at 503.768 kb on + strand at 503.885 kb on - strand at 503.947 kb on + strand at 504.067 kb on + strand, within EX31_RS23695 at 504.067 kb on + strand, within EX31_RS23695 at 504.067 kb on + strand, within EX31_RS23695 at 504.068 kb on - strand, within EX31_RS23695 at 504.068 kb on - strand, within EX31_RS23695 at 504.072 kb on - strand, within EX31_RS23695 at 504.305 kb on - strand, within EX31_RS23695 at 504.305 kb on - strand, within EX31_RS23695 at 504.305 kb on - strand, within EX31_RS23695 at 504.305 kb on - strand, within EX31_RS23695 at 504.352 kb on + strand, within EX31_RS23695 at 504.352 kb on + strand, within EX31_RS23695 at 504.361 kb on + strand, within EX31_RS23695 at 504.361 kb on + strand, within EX31_RS23695 at 504.361 kb on + strand, within EX31_RS23695 at 504.391 kb on - strand, within EX31_RS23695 at 504.404 kb on + strand, within EX31_RS23695 at 504.422 kb on - strand, within EX31_RS23695 at 504.422 kb on - strand, within EX31_RS23695 at 504.451 kb on + strand, within EX31_RS23695 at 504.452 kb on - strand, within EX31_RS23695 at 504.480 kb on + strand, within EX31_RS23695 at 504.480 kb on + strand, within EX31_RS23695 at 504.480 kb on + strand, within EX31_RS23695 at 504.583 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.669 kb on - strand, within EX31_RS23695 at 504.669 kb on - strand, within EX31_RS23695 at 504.669 kb on - strand, within EX31_RS23695 at 504.669 kb on - strand, within EX31_RS23695 at 504.669 kb on - strand, within EX31_RS23695 at 504.728 kb on - strand, within EX31_RS23695 at 504.753 kb on - strand, within EX31_RS23695 at 504.793 kb on + strand, within EX31_RS23695 at 504.794 kb on - strand, within EX31_RS23695 at 504.794 kb on - strand, within EX31_RS23695 at 504.917 kb on + strand at 504.917 kb on + strand at 504.917 kb on + strand at 504.917 kb on + strand at 504.917 kb on + strand at 504.917 kb on + strand at 504.917 kb on + strand at 504.918 kb on - strand at 504.918 kb on - strand at 504.930 kb on + strand at 505.002 kb on + strand at 505.082 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.142 kb on + strand, within EX31_RS23700 at 505.143 kb on - strand, within EX31_RS23700 at 505.143 kb on - strand, within EX31_RS23700 at 505.253 kb on - strand, within EX31_RS23700 at 505.468 kb on - strand, within EX31_RS23700 at 505.468 kb on - strand, within EX31_RS23700 at 505.468 kb on - strand, within EX31_RS23700 at 505.468 kb on - strand, within EX31_RS23700 at 505.510 kb on + strand, within EX31_RS23700 at 505.510 kb on + strand, within EX31_RS23700 at 505.531 kb on + strand, within EX31_RS23700 at 505.728 kb on - strand, within EX31_RS23700 at 505.728 kb on - strand, within EX31_RS23700 at 505.728 kb on - strand, within EX31_RS23700 at 505.728 kb on - strand, within EX31_RS23700 at 505.728 kb on - strand, within EX31_RS23700 at 505.825 kb on + strand, within EX31_RS23700
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 503,057 - EX31_RS23690 0.44 -0.1 503,057 - EX31_RS23690 0.44 +0.1 503,068 - EX31_RS23690 0.45 -1.7 503,073 - EX31_RS23690 0.46 -0.8 503,073 - EX31_RS23690 0.46 +0.4 503,073 - EX31_RS23690 0.46 -0.9 503,073 - EX31_RS23690 0.46 +0.3 503,085 - EX31_RS23690 0.46 -1.6 503,089 + EX31_RS23690 0.47 +0.2 503,090 - EX31_RS23690 0.47 -0.0 503,090 - EX31_RS23690 0.47 +0.5 503,101 + EX31_RS23690 0.48 -1.2 503,102 - EX31_RS23690 0.48 -0.5 503,139 + EX31_RS23690 0.51 -0.5 503,140 - EX31_RS23690 0.51 -2.2 503,140 - EX31_RS23690 0.51 -0.5 503,266 + EX31_RS23690 0.61 -0.6 503,266 + EX31_RS23690 0.61 -0.5 503,275 + EX31_RS23690 0.61 -1.5 503,276 - EX31_RS23690 0.61 -0.8 503,276 - EX31_RS23690 0.61 +0.2 503,393 - EX31_RS23690 0.71 -0.3 503,415 + EX31_RS23690 0.72 -2.0 503,415 + EX31_RS23690 0.72 +0.0 503,415 + EX31_RS23690 0.72 -0.9 503,416 - EX31_RS23690 0.72 +1.4 503,416 - EX31_RS23690 0.72 -0.7 503,416 - EX31_RS23690 0.72 +0.7 503,482 - EX31_RS23690 0.78 -0.7 503,593 + EX31_RS23690 0.86 -0.9 503,593 + EX31_RS23690 0.86 -1.1 503,594 - EX31_RS23690 0.86 -0.7 503,594 - EX31_RS23690 0.86 -2.0 503,711 + -0.9 503,711 + -0.6 503,711 + -0.9 503,712 - -1.2 503,712 - +1.1 503,712 - -0.3 503,712 - +0.4 503,717 + -0.3 503,717 + -1.2 503,717 + -0.6 503,768 + -0.4 503,885 - -2.3 503,947 + -0.8 504,067 + EX31_RS23695 0.16 -1.1 504,067 + EX31_RS23695 0.16 +0.1 504,067 + EX31_RS23695 0.16 -0.2 504,068 - EX31_RS23695 0.16 -2.8 504,068 - EX31_RS23695 0.16 -2.1 504,072 - EX31_RS23695 0.17 -2.2 504,305 - EX31_RS23695 0.39 -1.4 504,305 - EX31_RS23695 0.39 +0.3 504,305 - EX31_RS23695 0.39 -1.6 504,305 - EX31_RS23695 0.39 -1.5 504,352 + EX31_RS23695 0.44 -1.5 504,352 + EX31_RS23695 0.44 +1.4 504,361 + EX31_RS23695 0.45 -0.0 504,361 + EX31_RS23695 0.45 -2.8 504,361 + EX31_RS23695 0.45 +0.7 504,391 - EX31_RS23695 0.48 -1.5 504,404 + EX31_RS23695 0.49 +0.2 504,422 - EX31_RS23695 0.51 -1.7 504,422 - EX31_RS23695 0.51 -2.4 504,451 + EX31_RS23695 0.53 -1.1 504,452 - EX31_RS23695 0.53 -1.4 504,480 + EX31_RS23695 0.56 -1.2 504,480 + EX31_RS23695 0.56 +0.1 504,480 + EX31_RS23695 0.56 -0.9 504,583 + EX31_RS23695 0.66 -0.3 504,668 + EX31_RS23695 0.74 -0.8 504,668 + EX31_RS23695 0.74 -1.9 504,668 + EX31_RS23695 0.74 -0.9 504,668 + EX31_RS23695 0.74 -1.3 504,668 + EX31_RS23695 0.74 -1.2 504,668 + EX31_RS23695 0.74 -0.6 504,668 + EX31_RS23695 0.74 -2.0 504,668 + EX31_RS23695 0.74 -1.5 504,668 + EX31_RS23695 0.74 +0.4 504,668 + EX31_RS23695 0.74 -3.1 504,668 + EX31_RS23695 0.74 -2.3 504,669 - EX31_RS23695 0.74 -1.4 504,669 - EX31_RS23695 0.74 -1.9 504,669 - EX31_RS23695 0.74 -1.5 504,669 - EX31_RS23695 0.74 -2.0 504,669 - EX31_RS23695 0.74 -0.9 504,728 - EX31_RS23695 0.80 -2.5 504,753 - EX31_RS23695 0.82 -1.9 504,793 + EX31_RS23695 0.86 -0.8 504,794 - EX31_RS23695 0.86 -0.5 504,794 - EX31_RS23695 0.86 -0.6 504,917 + +1.2 504,917 + -0.4 504,917 + +0.7 504,917 + -1.0 504,917 + -0.9 504,917 + -1.0 504,917 + -0.8 504,918 - -1.8 504,918 - -0.4 504,930 + -1.7 505,002 + -0.7 505,082 + EX31_RS23700 0.12 +1.2 505,142 + EX31_RS23700 0.18 +1.2 505,142 + EX31_RS23700 0.18 +2.0 505,142 + EX31_RS23700 0.18 -1.0 505,142 + EX31_RS23700 0.18 -0.6 505,142 + EX31_RS23700 0.18 -1.2 505,142 + EX31_RS23700 0.18 +0.8 505,142 + EX31_RS23700 0.18 -1.0 505,143 - EX31_RS23700 0.18 -1.0 505,143 - EX31_RS23700 0.18 -0.3 505,253 - EX31_RS23700 0.27 -0.4 505,468 - EX31_RS23700 0.46 +1.2 505,468 - EX31_RS23700 0.46 -1.4 505,468 - EX31_RS23700 0.46 -0.2 505,468 - EX31_RS23700 0.46 -0.7 505,510 + EX31_RS23700 0.50 +0.9 505,510 + EX31_RS23700 0.50 -0.8 505,531 + EX31_RS23700 0.51 +1.3 505,728 - EX31_RS23700 0.69 +1.1 505,728 - EX31_RS23700 0.69 -1.6 505,728 - EX31_RS23700 0.69 +0.1 505,728 - EX31_RS23700 0.69 +0.6 505,728 - EX31_RS23700 0.69 +0.1 505,825 + EX31_RS23700 0.77 -1.3
Or see this region's nucleotide sequence