Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23685 and EX31_RS23690 are separated by 0 nucleotides EX31_RS23690 and EX31_RS23695 are separated by 128 nucleotides
EX31_RS23685: EX31_RS23685 - LysR family transcriptional regulator, at 501,537 to 502,490
_RS23685
EX31_RS23690: EX31_RS23690 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 502,491 to 503,768
_RS23690
EX31_RS23695: EX31_RS23695 - biotin synthase BioB, at 503,897 to 504,934
_RS23695
Position (kb)
502
503
504 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 501.493 kb on - strand at 501.532 kb on + strand at 501.532 kb on + strand at 501.532 kb on + strand at 501.532 kb on + strand at 501.532 kb on + strand at 501.532 kb on + strand at 501.532 kb on + strand at 501.533 kb on - strand at 501.533 kb on - strand at 501.719 kb on - strand, within EX31_RS23685 at 501.719 kb on - strand, within EX31_RS23685 at 501.775 kb on + strand, within EX31_RS23685 at 501.776 kb on - strand, within EX31_RS23685 at 501.838 kb on + strand, within EX31_RS23685 at 501.839 kb on - strand, within EX31_RS23685 at 501.845 kb on + strand, within EX31_RS23685 at 501.845 kb on + strand, within EX31_RS23685 at 501.845 kb on + strand, within EX31_RS23685 at 501.845 kb on + strand, within EX31_RS23685 at 501.846 kb on - strand, within EX31_RS23685 at 501.846 kb on - strand, within EX31_RS23685 at 501.846 kb on - strand, within EX31_RS23685 at 501.846 kb on - strand, within EX31_RS23685 at 501.887 kb on + strand, within EX31_RS23685 at 501.895 kb on + strand, within EX31_RS23685 at 501.896 kb on - strand, within EX31_RS23685 at 501.985 kb on + strand, within EX31_RS23685 at 501.985 kb on + strand, within EX31_RS23685 at 501.985 kb on + strand, within EX31_RS23685 at 501.985 kb on + strand, within EX31_RS23685 at 501.986 kb on - strand, within EX31_RS23685 at 502.058 kb on + strand, within EX31_RS23685 at 502.058 kb on + strand, within EX31_RS23685 at 502.083 kb on - strand, within EX31_RS23685 at 502.115 kb on + strand, within EX31_RS23685 at 502.115 kb on + strand, within EX31_RS23685 at 502.180 kb on + strand, within EX31_RS23685 at 502.180 kb on + strand, within EX31_RS23685 at 502.218 kb on - strand, within EX31_RS23685 at 502.282 kb on + strand, within EX31_RS23685 at 502.282 kb on + strand, within EX31_RS23685 at 502.283 kb on - strand, within EX31_RS23685 at 502.353 kb on + strand, within EX31_RS23685 at 502.353 kb on + strand, within EX31_RS23685 at 502.353 kb on + strand, within EX31_RS23685 at 502.353 kb on + strand, within EX31_RS23685 at 502.354 kb on - strand, within EX31_RS23685 at 502.355 kb on + strand, within EX31_RS23685 at 502.355 kb on + strand, within EX31_RS23685 at 502.355 kb on + strand, within EX31_RS23685 at 502.355 kb on + strand, within EX31_RS23685 at 502.356 kb on - strand, within EX31_RS23685 at 502.356 kb on - strand, within EX31_RS23685 at 502.356 kb on - strand, within EX31_RS23685 at 502.356 kb on - strand, within EX31_RS23685 at 502.356 kb on - strand, within EX31_RS23685 at 502.412 kb on + strand at 502.488 kb on + strand at 502.489 kb on - strand at 502.489 kb on - strand at 502.495 kb on + strand at 502.562 kb on - strand at 502.576 kb on + strand at 502.576 kb on + strand at 502.729 kb on - strand, within EX31_RS23690 at 502.729 kb on - strand, within EX31_RS23690 at 502.761 kb on + strand, within EX31_RS23690 at 502.761 kb on + strand, within EX31_RS23690 at 502.762 kb on - strand, within EX31_RS23690 at 502.762 kb on - strand, within EX31_RS23690 at 502.762 kb on - strand, within EX31_RS23690 at 502.791 kb on + strand, within EX31_RS23690 at 502.791 kb on + strand, within EX31_RS23690 at 502.792 kb on - strand, within EX31_RS23690 at 502.792 kb on - strand, within EX31_RS23690 at 502.792 kb on - strand, within EX31_RS23690 at 502.792 kb on - strand, within EX31_RS23690 at 503.057 kb on - strand, within EX31_RS23690 at 503.057 kb on - strand, within EX31_RS23690 at 503.068 kb on - strand, within EX31_RS23690 at 503.073 kb on - strand, within EX31_RS23690 at 503.073 kb on - strand, within EX31_RS23690 at 503.073 kb on - strand, within EX31_RS23690 at 503.073 kb on - strand, within EX31_RS23690 at 503.085 kb on - strand, within EX31_RS23690 at 503.089 kb on + strand, within EX31_RS23690 at 503.090 kb on - strand, within EX31_RS23690 at 503.090 kb on - strand, within EX31_RS23690 at 503.101 kb on + strand, within EX31_RS23690 at 503.102 kb on - strand, within EX31_RS23690 at 503.139 kb on + strand, within EX31_RS23690 at 503.140 kb on - strand, within EX31_RS23690 at 503.140 kb on - strand, within EX31_RS23690 at 503.266 kb on + strand, within EX31_RS23690 at 503.266 kb on + strand, within EX31_RS23690 at 503.275 kb on + strand, within EX31_RS23690 at 503.276 kb on - strand, within EX31_RS23690 at 503.276 kb on - strand, within EX31_RS23690 at 503.393 kb on - strand, within EX31_RS23690 at 503.415 kb on + strand, within EX31_RS23690 at 503.415 kb on + strand, within EX31_RS23690 at 503.415 kb on + strand, within EX31_RS23690 at 503.416 kb on - strand, within EX31_RS23690 at 503.416 kb on - strand, within EX31_RS23690 at 503.416 kb on - strand, within EX31_RS23690 at 503.482 kb on - strand, within EX31_RS23690 at 503.593 kb on + strand, within EX31_RS23690 at 503.593 kb on + strand, within EX31_RS23690 at 503.594 kb on - strand, within EX31_RS23690 at 503.594 kb on - strand, within EX31_RS23690 at 503.711 kb on + strand at 503.711 kb on + strand at 503.711 kb on + strand at 503.712 kb on - strand at 503.712 kb on - strand at 503.712 kb on - strand at 503.712 kb on - strand at 503.717 kb on + strand at 503.717 kb on + strand at 503.717 kb on + strand at 503.768 kb on + strand at 503.885 kb on - strand at 503.947 kb on + strand at 504.067 kb on + strand, within EX31_RS23695 at 504.067 kb on + strand, within EX31_RS23695 at 504.067 kb on + strand, within EX31_RS23695 at 504.068 kb on - strand, within EX31_RS23695 at 504.068 kb on - strand, within EX31_RS23695 at 504.072 kb on - strand, within EX31_RS23695 at 504.305 kb on - strand, within EX31_RS23695 at 504.305 kb on - strand, within EX31_RS23695 at 504.305 kb on - strand, within EX31_RS23695 at 504.305 kb on - strand, within EX31_RS23695 at 504.352 kb on + strand, within EX31_RS23695 at 504.352 kb on + strand, within EX31_RS23695 at 504.361 kb on + strand, within EX31_RS23695 at 504.361 kb on + strand, within EX31_RS23695 at 504.361 kb on + strand, within EX31_RS23695 at 504.391 kb on - strand, within EX31_RS23695 at 504.404 kb on + strand, within EX31_RS23695 at 504.422 kb on - strand, within EX31_RS23695 at 504.422 kb on - strand, within EX31_RS23695 at 504.451 kb on + strand, within EX31_RS23695 at 504.452 kb on - strand, within EX31_RS23695 at 504.480 kb on + strand, within EX31_RS23695 at 504.480 kb on + strand, within EX31_RS23695 at 504.480 kb on + strand, within EX31_RS23695 at 504.583 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.668 kb on + strand, within EX31_RS23695 at 504.669 kb on - strand, within EX31_RS23695 at 504.669 kb on - strand, within EX31_RS23695 at 504.669 kb on - strand, within EX31_RS23695 at 504.669 kb on - strand, within EX31_RS23695 at 504.669 kb on - strand, within EX31_RS23695 at 504.728 kb on - strand, within EX31_RS23695 at 504.753 kb on - strand, within EX31_RS23695
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 501,493 - -0.2 501,532 + -0.5 501,532 + +1.0 501,532 + +0.4 501,532 + -1.2 501,532 + +0.8 501,532 + +0.6 501,532 + -0.5 501,533 - +1.0 501,533 - -1.2 501,719 - EX31_RS23685 0.19 -1.1 501,719 - EX31_RS23685 0.19 -0.6 501,775 + EX31_RS23685 0.25 +0.1 501,776 - EX31_RS23685 0.25 +1.6 501,838 + EX31_RS23685 0.32 +0.5 501,839 - EX31_RS23685 0.32 -0.1 501,845 + EX31_RS23685 0.32 +0.3 501,845 + EX31_RS23685 0.32 +0.0 501,845 + EX31_RS23685 0.32 -1.1 501,845 + EX31_RS23685 0.32 +1.2 501,846 - EX31_RS23685 0.32 +1.1 501,846 - EX31_RS23685 0.32 -0.0 501,846 - EX31_RS23685 0.32 +0.1 501,846 - EX31_RS23685 0.32 -0.1 501,887 + EX31_RS23685 0.37 +0.2 501,895 + EX31_RS23685 0.38 -0.8 501,896 - EX31_RS23685 0.38 +1.2 501,985 + EX31_RS23685 0.47 -0.2 501,985 + EX31_RS23685 0.47 -0.0 501,985 + EX31_RS23685 0.47 +0.2 501,985 + EX31_RS23685 0.47 +0.1 501,986 - EX31_RS23685 0.47 +0.8 502,058 + EX31_RS23685 0.55 +1.3 502,058 + EX31_RS23685 0.55 +1.0 502,083 - EX31_RS23685 0.57 -0.5 502,115 + EX31_RS23685 0.61 +0.2 502,115 + EX31_RS23685 0.61 +0.2 502,180 + EX31_RS23685 0.67 -0.6 502,180 + EX31_RS23685 0.67 +0.1 502,218 - EX31_RS23685 0.71 -0.7 502,282 + EX31_RS23685 0.78 +0.4 502,282 + EX31_RS23685 0.78 +0.6 502,283 - EX31_RS23685 0.78 -0.3 502,353 + EX31_RS23685 0.86 +0.2 502,353 + EX31_RS23685 0.86 +0.1 502,353 + EX31_RS23685 0.86 +0.1 502,353 + EX31_RS23685 0.86 +0.4 502,354 - EX31_RS23685 0.86 +0.0 502,355 + EX31_RS23685 0.86 -1.8 502,355 + EX31_RS23685 0.86 +0.8 502,355 + EX31_RS23685 0.86 +0.1 502,355 + EX31_RS23685 0.86 -0.7 502,356 - EX31_RS23685 0.86 +0.6 502,356 - EX31_RS23685 0.86 -0.3 502,356 - EX31_RS23685 0.86 -0.4 502,356 - EX31_RS23685 0.86 -0.2 502,356 - EX31_RS23685 0.86 +0.4 502,412 + +1.0 502,488 + +0.1 502,489 - +0.0 502,489 - -0.2 502,495 + -0.7 502,562 - -0.3 502,576 + +0.7 502,576 + -1.9 502,729 - EX31_RS23690 0.19 -0.3 502,729 - EX31_RS23690 0.19 -2.2 502,761 + EX31_RS23690 0.21 +0.5 502,761 + EX31_RS23690 0.21 +0.4 502,762 - EX31_RS23690 0.21 +0.5 502,762 - EX31_RS23690 0.21 -0.9 502,762 - EX31_RS23690 0.21 -0.7 502,791 + EX31_RS23690 0.23 -0.8 502,791 + EX31_RS23690 0.23 -1.8 502,792 - EX31_RS23690 0.24 -0.2 502,792 - EX31_RS23690 0.24 -0.5 502,792 - EX31_RS23690 0.24 -1.1 502,792 - EX31_RS23690 0.24 +0.5 503,057 - EX31_RS23690 0.44 -0.1 503,057 - EX31_RS23690 0.44 +0.1 503,068 - EX31_RS23690 0.45 -1.7 503,073 - EX31_RS23690 0.46 -0.8 503,073 - EX31_RS23690 0.46 +0.4 503,073 - EX31_RS23690 0.46 -0.9 503,073 - EX31_RS23690 0.46 +0.3 503,085 - EX31_RS23690 0.46 -1.6 503,089 + EX31_RS23690 0.47 +0.2 503,090 - EX31_RS23690 0.47 -0.0 503,090 - EX31_RS23690 0.47 +0.5 503,101 + EX31_RS23690 0.48 -1.2 503,102 - EX31_RS23690 0.48 -0.5 503,139 + EX31_RS23690 0.51 -0.5 503,140 - EX31_RS23690 0.51 -2.2 503,140 - EX31_RS23690 0.51 -0.5 503,266 + EX31_RS23690 0.61 -0.6 503,266 + EX31_RS23690 0.61 -0.5 503,275 + EX31_RS23690 0.61 -1.5 503,276 - EX31_RS23690 0.61 -0.8 503,276 - EX31_RS23690 0.61 +0.2 503,393 - EX31_RS23690 0.71 -0.3 503,415 + EX31_RS23690 0.72 -2.0 503,415 + EX31_RS23690 0.72 +0.0 503,415 + EX31_RS23690 0.72 -0.9 503,416 - EX31_RS23690 0.72 +1.4 503,416 - EX31_RS23690 0.72 -0.7 503,416 - EX31_RS23690 0.72 +0.7 503,482 - EX31_RS23690 0.78 -0.7 503,593 + EX31_RS23690 0.86 -0.9 503,593 + EX31_RS23690 0.86 -1.1 503,594 - EX31_RS23690 0.86 -0.7 503,594 - EX31_RS23690 0.86 -2.0 503,711 + -0.9 503,711 + -0.6 503,711 + -0.9 503,712 - -1.2 503,712 - +1.1 503,712 - -0.3 503,712 - +0.4 503,717 + -0.3 503,717 + -1.2 503,717 + -0.6 503,768 + -0.4 503,885 - -2.3 503,947 + -0.8 504,067 + EX31_RS23695 0.16 -1.1 504,067 + EX31_RS23695 0.16 +0.1 504,067 + EX31_RS23695 0.16 -0.2 504,068 - EX31_RS23695 0.16 -2.8 504,068 - EX31_RS23695 0.16 -2.1 504,072 - EX31_RS23695 0.17 -2.2 504,305 - EX31_RS23695 0.39 -1.4 504,305 - EX31_RS23695 0.39 +0.3 504,305 - EX31_RS23695 0.39 -1.6 504,305 - EX31_RS23695 0.39 -1.5 504,352 + EX31_RS23695 0.44 -1.5 504,352 + EX31_RS23695 0.44 +1.4 504,361 + EX31_RS23695 0.45 -0.0 504,361 + EX31_RS23695 0.45 -2.8 504,361 + EX31_RS23695 0.45 +0.7 504,391 - EX31_RS23695 0.48 -1.5 504,404 + EX31_RS23695 0.49 +0.2 504,422 - EX31_RS23695 0.51 -1.7 504,422 - EX31_RS23695 0.51 -2.4 504,451 + EX31_RS23695 0.53 -1.1 504,452 - EX31_RS23695 0.53 -1.4 504,480 + EX31_RS23695 0.56 -1.2 504,480 + EX31_RS23695 0.56 +0.1 504,480 + EX31_RS23695 0.56 -0.9 504,583 + EX31_RS23695 0.66 -0.3 504,668 + EX31_RS23695 0.74 -0.8 504,668 + EX31_RS23695 0.74 -1.9 504,668 + EX31_RS23695 0.74 -0.9 504,668 + EX31_RS23695 0.74 -1.3 504,668 + EX31_RS23695 0.74 -1.2 504,668 + EX31_RS23695 0.74 -0.6 504,668 + EX31_RS23695 0.74 -2.0 504,668 + EX31_RS23695 0.74 -1.5 504,668 + EX31_RS23695 0.74 +0.4 504,668 + EX31_RS23695 0.74 -3.1 504,668 + EX31_RS23695 0.74 -2.3 504,669 - EX31_RS23695 0.74 -1.4 504,669 - EX31_RS23695 0.74 -1.9 504,669 - EX31_RS23695 0.74 -1.5 504,669 - EX31_RS23695 0.74 -2.0 504,669 - EX31_RS23695 0.74 -0.9 504,728 - EX31_RS23695 0.80 -2.5 504,753 - EX31_RS23695 0.82 -1.9
Or see this region's nucleotide sequence