Strain Fitness in Rahnella sp. WP5 around EX31_RS23690

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23685 and EX31_RS23690 are separated by 0 nucleotidesEX31_RS23690 and EX31_RS23695 are separated by 128 nucleotides EX31_RS23685: EX31_RS23685 - LysR family transcriptional regulator, at 501,537 to 502,490 _RS23685 EX31_RS23690: EX31_RS23690 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 502,491 to 503,768 _RS23690 EX31_RS23695: EX31_RS23695 - biotin synthase BioB, at 503,897 to 504,934 _RS23695 Position (kb) 502 503 504Strain fitness (log2 ratio) -3 -2 -1 0 1at 501.493 kb on - strandat 501.532 kb on + strandat 501.532 kb on + strandat 501.532 kb on + strandat 501.532 kb on + strandat 501.532 kb on + strandat 501.532 kb on + strandat 501.532 kb on + strandat 501.533 kb on - strandat 501.533 kb on - strandat 501.719 kb on - strand, within EX31_RS23685at 501.719 kb on - strand, within EX31_RS23685at 501.775 kb on + strand, within EX31_RS23685at 501.776 kb on - strand, within EX31_RS23685at 501.838 kb on + strand, within EX31_RS23685at 501.839 kb on - strand, within EX31_RS23685at 501.845 kb on + strand, within EX31_RS23685at 501.845 kb on + strand, within EX31_RS23685at 501.845 kb on + strand, within EX31_RS23685at 501.845 kb on + strand, within EX31_RS23685at 501.846 kb on - strand, within EX31_RS23685at 501.846 kb on - strand, within EX31_RS23685at 501.846 kb on - strand, within EX31_RS23685at 501.846 kb on - strand, within EX31_RS23685at 501.887 kb on + strand, within EX31_RS23685at 501.895 kb on + strand, within EX31_RS23685at 501.896 kb on - strand, within EX31_RS23685at 501.985 kb on + strand, within EX31_RS23685at 501.985 kb on + strand, within EX31_RS23685at 501.985 kb on + strand, within EX31_RS23685at 501.985 kb on + strand, within EX31_RS23685at 501.986 kb on - strand, within EX31_RS23685at 502.058 kb on + strand, within EX31_RS23685at 502.058 kb on + strand, within EX31_RS23685at 502.083 kb on - strand, within EX31_RS23685at 502.115 kb on + strand, within EX31_RS23685at 502.115 kb on + strand, within EX31_RS23685at 502.180 kb on + strand, within EX31_RS23685at 502.180 kb on + strand, within EX31_RS23685at 502.218 kb on - strand, within EX31_RS23685at 502.282 kb on + strand, within EX31_RS23685at 502.282 kb on + strand, within EX31_RS23685at 502.283 kb on - strand, within EX31_RS23685at 502.353 kb on + strand, within EX31_RS23685at 502.353 kb on + strand, within EX31_RS23685at 502.353 kb on + strand, within EX31_RS23685at 502.353 kb on + strand, within EX31_RS23685at 502.354 kb on - strand, within EX31_RS23685at 502.355 kb on + strand, within EX31_RS23685at 502.355 kb on + strand, within EX31_RS23685at 502.355 kb on + strand, within EX31_RS23685at 502.355 kb on + strand, within EX31_RS23685at 502.356 kb on - strand, within EX31_RS23685at 502.356 kb on - strand, within EX31_RS23685at 502.356 kb on - strand, within EX31_RS23685at 502.356 kb on - strand, within EX31_RS23685at 502.356 kb on - strand, within EX31_RS23685at 502.412 kb on + strandat 502.488 kb on + strandat 502.489 kb on - strandat 502.489 kb on - strandat 502.495 kb on + strandat 502.562 kb on - strandat 502.576 kb on + strandat 502.576 kb on + strandat 502.729 kb on - strand, within EX31_RS23690at 502.729 kb on - strand, within EX31_RS23690at 502.761 kb on + strand, within EX31_RS23690at 502.761 kb on + strand, within EX31_RS23690at 502.762 kb on - strand, within EX31_RS23690at 502.762 kb on - strand, within EX31_RS23690at 502.762 kb on - strand, within EX31_RS23690at 502.791 kb on + strand, within EX31_RS23690at 502.791 kb on + strand, within EX31_RS23690at 502.792 kb on - strand, within EX31_RS23690at 502.792 kb on - strand, within EX31_RS23690at 502.792 kb on - strand, within EX31_RS23690at 502.792 kb on - strand, within EX31_RS23690at 503.057 kb on - strand, within EX31_RS23690at 503.057 kb on - strand, within EX31_RS23690at 503.068 kb on - strand, within EX31_RS23690at 503.073 kb on - strand, within EX31_RS23690at 503.073 kb on - strand, within EX31_RS23690at 503.073 kb on - strand, within EX31_RS23690at 503.073 kb on - strand, within EX31_RS23690at 503.085 kb on - strand, within EX31_RS23690at 503.089 kb on + strand, within EX31_RS23690at 503.090 kb on - strand, within EX31_RS23690at 503.090 kb on - strand, within EX31_RS23690at 503.101 kb on + strand, within EX31_RS23690at 503.102 kb on - strand, within EX31_RS23690at 503.139 kb on + strand, within EX31_RS23690at 503.140 kb on - strand, within EX31_RS23690at 503.140 kb on - strand, within EX31_RS23690at 503.266 kb on + strand, within EX31_RS23690at 503.266 kb on + strand, within EX31_RS23690at 503.275 kb on + strand, within EX31_RS23690at 503.276 kb on - strand, within EX31_RS23690at 503.276 kb on - strand, within EX31_RS23690at 503.393 kb on - strand, within EX31_RS23690at 503.415 kb on + strand, within EX31_RS23690at 503.415 kb on + strand, within EX31_RS23690at 503.415 kb on + strand, within EX31_RS23690at 503.416 kb on - strand, within EX31_RS23690at 503.416 kb on - strand, within EX31_RS23690at 503.416 kb on - strand, within EX31_RS23690at 503.482 kb on - strand, within EX31_RS23690at 503.593 kb on + strand, within EX31_RS23690at 503.593 kb on + strand, within EX31_RS23690at 503.594 kb on - strand, within EX31_RS23690at 503.594 kb on - strand, within EX31_RS23690at 503.711 kb on + strandat 503.711 kb on + strandat 503.711 kb on + strandat 503.712 kb on - strandat 503.712 kb on - strandat 503.712 kb on - strandat 503.712 kb on - strandat 503.717 kb on + strandat 503.717 kb on + strandat 503.717 kb on + strandat 503.768 kb on + strandat 503.885 kb on - strandat 503.947 kb on + strandat 504.067 kb on + strand, within EX31_RS23695at 504.067 kb on + strand, within EX31_RS23695at 504.067 kb on + strand, within EX31_RS23695at 504.068 kb on - strand, within EX31_RS23695at 504.068 kb on - strand, within EX31_RS23695at 504.072 kb on - strand, within EX31_RS23695at 504.305 kb on - strand, within EX31_RS23695at 504.305 kb on - strand, within EX31_RS23695at 504.305 kb on - strand, within EX31_RS23695at 504.305 kb on - strand, within EX31_RS23695at 504.352 kb on + strand, within EX31_RS23695at 504.352 kb on + strand, within EX31_RS23695at 504.361 kb on + strand, within EX31_RS23695at 504.361 kb on + strand, within EX31_RS23695at 504.361 kb on + strand, within EX31_RS23695at 504.391 kb on - strand, within EX31_RS23695at 504.404 kb on + strand, within EX31_RS23695at 504.422 kb on - strand, within EX31_RS23695at 504.422 kb on - strand, within EX31_RS23695at 504.451 kb on + strand, within EX31_RS23695at 504.452 kb on - strand, within EX31_RS23695at 504.480 kb on + strand, within EX31_RS23695at 504.480 kb on + strand, within EX31_RS23695at 504.480 kb on + strand, within EX31_RS23695at 504.583 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.668 kb on + strand, within EX31_RS23695at 504.669 kb on - strand, within EX31_RS23695at 504.669 kb on - strand, within EX31_RS23695at 504.669 kb on - strand, within EX31_RS23695at 504.669 kb on - strand, within EX31_RS23695at 504.669 kb on - strand, within EX31_RS23695at 504.728 kb on - strand, within EX31_RS23695at 504.753 kb on - strand, within EX31_RS23695

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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501,493 - -0.2
501,532 + -0.5
501,532 + +1.0
501,532 + +0.4
501,532 + -1.2
501,532 + +0.8
501,532 + +0.6
501,532 + -0.5
501,533 - +1.0
501,533 - -1.2
501,719 - EX31_RS23685 0.19 -1.1
501,719 - EX31_RS23685 0.19 -0.6
501,775 + EX31_RS23685 0.25 +0.1
501,776 - EX31_RS23685 0.25 +1.6
501,838 + EX31_RS23685 0.32 +0.5
501,839 - EX31_RS23685 0.32 -0.1
501,845 + EX31_RS23685 0.32 +0.3
501,845 + EX31_RS23685 0.32 +0.0
501,845 + EX31_RS23685 0.32 -1.1
501,845 + EX31_RS23685 0.32 +1.2
501,846 - EX31_RS23685 0.32 +1.1
501,846 - EX31_RS23685 0.32 -0.0
501,846 - EX31_RS23685 0.32 +0.1
501,846 - EX31_RS23685 0.32 -0.1
501,887 + EX31_RS23685 0.37 +0.2
501,895 + EX31_RS23685 0.38 -0.8
501,896 - EX31_RS23685 0.38 +1.2
501,985 + EX31_RS23685 0.47 -0.2
501,985 + EX31_RS23685 0.47 -0.0
501,985 + EX31_RS23685 0.47 +0.2
501,985 + EX31_RS23685 0.47 +0.1
501,986 - EX31_RS23685 0.47 +0.8
502,058 + EX31_RS23685 0.55 +1.3
502,058 + EX31_RS23685 0.55 +1.0
502,083 - EX31_RS23685 0.57 -0.5
502,115 + EX31_RS23685 0.61 +0.2
502,115 + EX31_RS23685 0.61 +0.2
502,180 + EX31_RS23685 0.67 -0.6
502,180 + EX31_RS23685 0.67 +0.1
502,218 - EX31_RS23685 0.71 -0.7
502,282 + EX31_RS23685 0.78 +0.4
502,282 + EX31_RS23685 0.78 +0.6
502,283 - EX31_RS23685 0.78 -0.3
502,353 + EX31_RS23685 0.86 +0.2
502,353 + EX31_RS23685 0.86 +0.1
502,353 + EX31_RS23685 0.86 +0.1
502,353 + EX31_RS23685 0.86 +0.4
502,354 - EX31_RS23685 0.86 +0.0
502,355 + EX31_RS23685 0.86 -1.8
502,355 + EX31_RS23685 0.86 +0.8
502,355 + EX31_RS23685 0.86 +0.1
502,355 + EX31_RS23685 0.86 -0.7
502,356 - EX31_RS23685 0.86 +0.6
502,356 - EX31_RS23685 0.86 -0.3
502,356 - EX31_RS23685 0.86 -0.4
502,356 - EX31_RS23685 0.86 -0.2
502,356 - EX31_RS23685 0.86 +0.4
502,412 + +1.0
502,488 + +0.1
502,489 - +0.0
502,489 - -0.2
502,495 + -0.7
502,562 - -0.3
502,576 + +0.7
502,576 + -1.9
502,729 - EX31_RS23690 0.19 -0.3
502,729 - EX31_RS23690 0.19 -2.2
502,761 + EX31_RS23690 0.21 +0.5
502,761 + EX31_RS23690 0.21 +0.4
502,762 - EX31_RS23690 0.21 +0.5
502,762 - EX31_RS23690 0.21 -0.9
502,762 - EX31_RS23690 0.21 -0.7
502,791 + EX31_RS23690 0.23 -0.8
502,791 + EX31_RS23690 0.23 -1.8
502,792 - EX31_RS23690 0.24 -0.2
502,792 - EX31_RS23690 0.24 -0.5
502,792 - EX31_RS23690 0.24 -1.1
502,792 - EX31_RS23690 0.24 +0.5
503,057 - EX31_RS23690 0.44 -0.1
503,057 - EX31_RS23690 0.44 +0.1
503,068 - EX31_RS23690 0.45 -1.7
503,073 - EX31_RS23690 0.46 -0.8
503,073 - EX31_RS23690 0.46 +0.4
503,073 - EX31_RS23690 0.46 -0.9
503,073 - EX31_RS23690 0.46 +0.3
503,085 - EX31_RS23690 0.46 -1.6
503,089 + EX31_RS23690 0.47 +0.2
503,090 - EX31_RS23690 0.47 -0.0
503,090 - EX31_RS23690 0.47 +0.5
503,101 + EX31_RS23690 0.48 -1.2
503,102 - EX31_RS23690 0.48 -0.5
503,139 + EX31_RS23690 0.51 -0.5
503,140 - EX31_RS23690 0.51 -2.2
503,140 - EX31_RS23690 0.51 -0.5
503,266 + EX31_RS23690 0.61 -0.6
503,266 + EX31_RS23690 0.61 -0.5
503,275 + EX31_RS23690 0.61 -1.5
503,276 - EX31_RS23690 0.61 -0.8
503,276 - EX31_RS23690 0.61 +0.2
503,393 - EX31_RS23690 0.71 -0.3
503,415 + EX31_RS23690 0.72 -2.0
503,415 + EX31_RS23690 0.72 +0.0
503,415 + EX31_RS23690 0.72 -0.9
503,416 - EX31_RS23690 0.72 +1.4
503,416 - EX31_RS23690 0.72 -0.7
503,416 - EX31_RS23690 0.72 +0.7
503,482 - EX31_RS23690 0.78 -0.7
503,593 + EX31_RS23690 0.86 -0.9
503,593 + EX31_RS23690 0.86 -1.1
503,594 - EX31_RS23690 0.86 -0.7
503,594 - EX31_RS23690 0.86 -2.0
503,711 + -0.9
503,711 + -0.6
503,711 + -0.9
503,712 - -1.2
503,712 - +1.1
503,712 - -0.3
503,712 - +0.4
503,717 + -0.3
503,717 + -1.2
503,717 + -0.6
503,768 + -0.4
503,885 - -2.3
503,947 + -0.8
504,067 + EX31_RS23695 0.16 -1.1
504,067 + EX31_RS23695 0.16 +0.1
504,067 + EX31_RS23695 0.16 -0.2
504,068 - EX31_RS23695 0.16 -2.8
504,068 - EX31_RS23695 0.16 -2.1
504,072 - EX31_RS23695 0.17 -2.2
504,305 - EX31_RS23695 0.39 -1.4
504,305 - EX31_RS23695 0.39 +0.3
504,305 - EX31_RS23695 0.39 -1.6
504,305 - EX31_RS23695 0.39 -1.5
504,352 + EX31_RS23695 0.44 -1.5
504,352 + EX31_RS23695 0.44 +1.4
504,361 + EX31_RS23695 0.45 -0.0
504,361 + EX31_RS23695 0.45 -2.8
504,361 + EX31_RS23695 0.45 +0.7
504,391 - EX31_RS23695 0.48 -1.5
504,404 + EX31_RS23695 0.49 +0.2
504,422 - EX31_RS23695 0.51 -1.7
504,422 - EX31_RS23695 0.51 -2.4
504,451 + EX31_RS23695 0.53 -1.1
504,452 - EX31_RS23695 0.53 -1.4
504,480 + EX31_RS23695 0.56 -1.2
504,480 + EX31_RS23695 0.56 +0.1
504,480 + EX31_RS23695 0.56 -0.9
504,583 + EX31_RS23695 0.66 -0.3
504,668 + EX31_RS23695 0.74 -0.8
504,668 + EX31_RS23695 0.74 -1.9
504,668 + EX31_RS23695 0.74 -0.9
504,668 + EX31_RS23695 0.74 -1.3
504,668 + EX31_RS23695 0.74 -1.2
504,668 + EX31_RS23695 0.74 -0.6
504,668 + EX31_RS23695 0.74 -2.0
504,668 + EX31_RS23695 0.74 -1.5
504,668 + EX31_RS23695 0.74 +0.4
504,668 + EX31_RS23695 0.74 -3.1
504,668 + EX31_RS23695 0.74 -2.3
504,669 - EX31_RS23695 0.74 -1.4
504,669 - EX31_RS23695 0.74 -1.9
504,669 - EX31_RS23695 0.74 -1.5
504,669 - EX31_RS23695 0.74 -2.0
504,669 - EX31_RS23695 0.74 -0.9
504,728 - EX31_RS23695 0.80 -2.5
504,753 - EX31_RS23695 0.82 -1.9

Or see this region's nucleotide sequence