Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16505 and EX31_RS16510 are separated by 402 nucleotides EX31_RS16510 and EX31_RS16515 are separated by 71 nucleotides
EX31_RS16505: EX31_RS16505 - sensor domain-containing phosphodiesterase, at 12,391 to 14,154
_RS16505
EX31_RS16510: EX31_RS16510 - EAL domain-containing protein, at 14,557 to 15,315
_RS16510
EX31_RS16515: EX31_RS16515 - GGDEF domain-containing protein, at 15,387 to 16,445
_RS16515
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.563 kb on + strand, within EX31_RS16505 at 13.564 kb on - strand, within EX31_RS16505 at 13.584 kb on + strand, within EX31_RS16505 at 13.590 kb on + strand, within EX31_RS16505 at 13.590 kb on + strand, within EX31_RS16505 at 13.590 kb on + strand, within EX31_RS16505 at 13.590 kb on + strand, within EX31_RS16505 at 13.591 kb on - strand, within EX31_RS16505 at 13.591 kb on - strand, within EX31_RS16505 at 13.591 kb on - strand, within EX31_RS16505 at 13.591 kb on - strand, within EX31_RS16505 at 13.591 kb on - strand, within EX31_RS16505 at 13.612 kb on - strand, within EX31_RS16505 at 13.617 kb on + strand, within EX31_RS16505 at 13.661 kb on + strand, within EX31_RS16505 at 13.661 kb on + strand, within EX31_RS16505 at 13.661 kb on + strand, within EX31_RS16505 at 13.661 kb on + strand, within EX31_RS16505 at 13.661 kb on + strand, within EX31_RS16505 at 13.661 kb on + strand, within EX31_RS16505 at 13.662 kb on - strand, within EX31_RS16505 at 13.662 kb on - strand, within EX31_RS16505 at 13.662 kb on - strand, within EX31_RS16505 at 13.662 kb on - strand, within EX31_RS16505 at 13.662 kb on - strand, within EX31_RS16505 at 13.671 kb on + strand, within EX31_RS16505 at 13.722 kb on + strand, within EX31_RS16505 at 13.746 kb on + strand, within EX31_RS16505 at 13.746 kb on + strand, within EX31_RS16505 at 13.746 kb on + strand, within EX31_RS16505 at 13.746 kb on + strand, within EX31_RS16505 at 13.747 kb on - strand, within EX31_RS16505 at 13.747 kb on - strand, within EX31_RS16505 at 13.747 kb on - strand, within EX31_RS16505 at 13.747 kb on - strand, within EX31_RS16505 at 13.747 kb on - strand, within EX31_RS16505 at 13.747 kb on - strand, within EX31_RS16505 at 13.747 kb on - strand, within EX31_RS16505 at 13.758 kb on + strand, within EX31_RS16505 at 13.758 kb on + strand, within EX31_RS16505 at 13.758 kb on + strand, within EX31_RS16505 at 13.759 kb on - strand, within EX31_RS16505 at 13.759 kb on - strand, within EX31_RS16505 at 13.759 kb on - strand, within EX31_RS16505 at 13.763 kb on - strand, within EX31_RS16505 at 13.763 kb on - strand, within EX31_RS16505 at 13.763 kb on - strand, within EX31_RS16505 at 13.763 kb on - strand, within EX31_RS16505 at 13.763 kb on - strand, within EX31_RS16505 at 13.776 kb on + strand, within EX31_RS16505 at 13.776 kb on + strand, within EX31_RS16505 at 13.777 kb on - strand, within EX31_RS16505 at 13.777 kb on - strand, within EX31_RS16505 at 13.777 kb on - strand, within EX31_RS16505 at 13.777 kb on - strand, within EX31_RS16505 at 13.777 kb on - strand, within EX31_RS16505 at 13.777 kb on - strand, within EX31_RS16505 at 13.780 kb on + strand, within EX31_RS16505 at 13.781 kb on - strand, within EX31_RS16505 at 13.821 kb on - strand, within EX31_RS16505 at 13.857 kb on - strand, within EX31_RS16505 at 13.897 kb on - strand, within EX31_RS16505 at 13.898 kb on + strand, within EX31_RS16505 at 13.898 kb on + strand, within EX31_RS16505 at 13.898 kb on + strand, within EX31_RS16505 at 13.899 kb on - strand, within EX31_RS16505 at 13.899 kb on - strand, within EX31_RS16505 at 13.899 kb on - strand, within EX31_RS16505 at 13.899 kb on - strand, within EX31_RS16505 at 13.899 kb on - strand, within EX31_RS16505 at 13.899 kb on - strand, within EX31_RS16505 at 13.899 kb on - strand, within EX31_RS16505 at 13.899 kb on - strand, within EX31_RS16505 at 13.899 kb on - strand, within EX31_RS16505 at 13.926 kb on + strand, within EX31_RS16505 at 13.927 kb on - strand, within EX31_RS16505 at 13.957 kb on + strand, within EX31_RS16505 at 13.958 kb on - strand, within EX31_RS16505 at 13.966 kb on - strand, within EX31_RS16505 at 13.966 kb on - strand, within EX31_RS16505 at 13.966 kb on - strand, within EX31_RS16505 at 13.985 kb on + strand at 13.986 kb on - strand at 14.035 kb on + strand at 14.036 kb on - strand at 14.036 kb on - strand at 14.098 kb on - strand at 14.098 kb on - strand at 14.107 kb on + strand at 14.108 kb on - strand at 14.154 kb on + strand at 14.154 kb on + strand at 14.154 kb on + strand at 14.155 kb on - strand at 14.155 kb on - strand at 14.155 kb on - strand at 14.155 kb on - strand at 14.155 kb on - strand at 14.155 kb on - strand at 14.155 kb on - strand at 14.155 kb on - strand at 14.155 kb on - strand at 14.182 kb on + strand at 14.183 kb on - strand at 14.200 kb on - strand at 14.205 kb on + strand at 14.205 kb on + strand at 14.206 kb on - strand at 14.206 kb on - strand at 14.206 kb on - strand at 14.206 kb on - strand at 14.206 kb on - strand at 14.206 kb on - strand at 14.223 kb on - strand at 14.223 kb on - strand at 14.268 kb on + strand at 14.269 kb on - strand at 14.269 kb on - strand at 14.269 kb on - strand at 14.269 kb on - strand at 14.269 kb on - strand at 14.270 kb on + strand at 14.271 kb on - strand at 14.271 kb on - strand at 14.284 kb on - strand at 14.289 kb on + strand at 14.290 kb on - strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.321 kb on - strand at 14.321 kb on - strand at 14.321 kb on - strand at 14.321 kb on - strand at 14.321 kb on - strand at 14.339 kb on + strand at 14.343 kb on - strand at 14.343 kb on - strand at 14.441 kb on - strand at 14.441 kb on - strand at 14.441 kb on - strand at 14.441 kb on - strand at 14.442 kb on + strand at 14.443 kb on - strand at 14.482 kb on + strand at 14.484 kb on + strand at 14.484 kb on + strand at 14.484 kb on + strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.485 kb on - strand at 14.488 kb on + strand at 14.489 kb on - strand at 14.489 kb on - strand at 14.538 kb on + strand at 14.646 kb on + strand, within EX31_RS16510 at 14.646 kb on + strand, within EX31_RS16510 at 14.646 kb on + strand, within EX31_RS16510 at 14.647 kb on - strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.650 kb on + strand, within EX31_RS16510 at 14.651 kb on - strand, within EX31_RS16510 at 14.651 kb on - strand, within EX31_RS16510 at 14.651 kb on - strand, within EX31_RS16510 at 14.651 kb on - strand, within EX31_RS16510 at 14.651 kb on - strand, within EX31_RS16510 at 14.669 kb on + strand, within EX31_RS16510 at 14.669 kb on + strand, within EX31_RS16510 at 14.973 kb on + strand, within EX31_RS16510 at 14.973 kb on + strand, within EX31_RS16510 at 14.976 kb on + strand, within EX31_RS16510 at 14.978 kb on + strand, within EX31_RS16510 at 14.984 kb on + strand, within EX31_RS16510 at 15.163 kb on - strand, within EX31_RS16510 at 15.219 kb on + strand, within EX31_RS16510 at 15.220 kb on - strand, within EX31_RS16510 at 15.226 kb on - strand, within EX31_RS16510 at 15.266 kb on + strand at 15.314 kb on - strand at 15.443 kb on + strand at 15.456 kb on - strand at 15.558 kb on - strand, within EX31_RS16515 at 15.560 kb on + strand, within EX31_RS16515 at 15.561 kb on - strand, within EX31_RS16515 at 15.622 kb on - strand, within EX31_RS16515 at 15.623 kb on + strand, within EX31_RS16515 at 15.628 kb on - strand, within EX31_RS16515 at 15.628 kb on - strand, within EX31_RS16515 at 15.649 kb on + strand, within EX31_RS16515 at 15.650 kb on - strand, within EX31_RS16515 at 15.707 kb on + strand, within EX31_RS16515 at 15.822 kb on - strand, within EX31_RS16515 at 15.823 kb on + strand, within EX31_RS16515 at 15.858 kb on - strand, within EX31_RS16515 at 15.948 kb on - strand, within EX31_RS16515 at 16.062 kb on + strand, within EX31_RS16515 at 16.062 kb on + strand, within EX31_RS16515 at 16.239 kb on - strand, within EX31_RS16515 at 16.239 kb on - strand, within EX31_RS16515 at 16.262 kb on + strand, within EX31_RS16515
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 13,563 + EX31_RS16505 0.66 +1.4 13,564 - EX31_RS16505 0.66 +1.0 13,584 + EX31_RS16505 0.68 -1.0 13,590 + EX31_RS16505 0.68 +1.0 13,590 + EX31_RS16505 0.68 -1.7 13,590 + EX31_RS16505 0.68 +0.3 13,590 + EX31_RS16505 0.68 -2.5 13,591 - EX31_RS16505 0.68 +1.4 13,591 - EX31_RS16505 0.68 -0.1 13,591 - EX31_RS16505 0.68 -0.1 13,591 - EX31_RS16505 0.68 -0.5 13,591 - EX31_RS16505 0.68 +0.4 13,612 - EX31_RS16505 0.69 -0.6 13,617 + EX31_RS16505 0.70 -1.7 13,661 + EX31_RS16505 0.72 -1.2 13,661 + EX31_RS16505 0.72 -0.3 13,661 + EX31_RS16505 0.72 +0.6 13,661 + EX31_RS16505 0.72 -0.4 13,661 + EX31_RS16505 0.72 +0.4 13,661 + EX31_RS16505 0.72 -1.2 13,662 - EX31_RS16505 0.72 -0.3 13,662 - EX31_RS16505 0.72 -0.2 13,662 - EX31_RS16505 0.72 +0.8 13,662 - EX31_RS16505 0.72 +0.6 13,662 - EX31_RS16505 0.72 -0.0 13,671 + EX31_RS16505 0.73 -0.3 13,722 + EX31_RS16505 0.75 -0.6 13,746 + EX31_RS16505 0.77 -0.9 13,746 + EX31_RS16505 0.77 +0.0 13,746 + EX31_RS16505 0.77 -0.6 13,746 + EX31_RS16505 0.77 -0.1 13,747 - EX31_RS16505 0.77 +0.2 13,747 - EX31_RS16505 0.77 -1.6 13,747 - EX31_RS16505 0.77 -0.7 13,747 - EX31_RS16505 0.77 +0.4 13,747 - EX31_RS16505 0.77 +1.3 13,747 - EX31_RS16505 0.77 +1.4 13,747 - EX31_RS16505 0.77 -0.2 13,758 + EX31_RS16505 0.77 -0.1 13,758 + EX31_RS16505 0.77 +1.1 13,758 + EX31_RS16505 0.77 -0.7 13,759 - EX31_RS16505 0.78 +0.2 13,759 - EX31_RS16505 0.78 +1.1 13,759 - EX31_RS16505 0.78 -1.0 13,763 - EX31_RS16505 0.78 -0.5 13,763 - EX31_RS16505 0.78 -0.1 13,763 - EX31_RS16505 0.78 +0.3 13,763 - EX31_RS16505 0.78 +0.9 13,763 - EX31_RS16505 0.78 +0.6 13,776 + EX31_RS16505 0.79 -0.3 13,776 + EX31_RS16505 0.79 -0.0 13,777 - EX31_RS16505 0.79 +0.3 13,777 - EX31_RS16505 0.79 +0.2 13,777 - EX31_RS16505 0.79 -0.8 13,777 - EX31_RS16505 0.79 +0.1 13,777 - EX31_RS16505 0.79 +0.1 13,777 - EX31_RS16505 0.79 +0.2 13,780 + EX31_RS16505 0.79 -0.6 13,781 - EX31_RS16505 0.79 +1.2 13,821 - EX31_RS16505 0.81 -0.2 13,857 - EX31_RS16505 0.83 -1.2 13,897 - EX31_RS16505 0.85 +0.7 13,898 + EX31_RS16505 0.85 +0.8 13,898 + EX31_RS16505 0.85 -0.7 13,898 + EX31_RS16505 0.85 -0.3 13,899 - EX31_RS16505 0.85 -0.3 13,899 - EX31_RS16505 0.85 +0.4 13,899 - EX31_RS16505 0.85 +0.1 13,899 - EX31_RS16505 0.85 +0.6 13,899 - EX31_RS16505 0.85 +0.4 13,899 - EX31_RS16505 0.85 +0.3 13,899 - EX31_RS16505 0.85 -0.8 13,899 - EX31_RS16505 0.85 -0.3 13,899 - EX31_RS16505 0.85 -1.9 13,926 + EX31_RS16505 0.87 +0.1 13,927 - EX31_RS16505 0.87 -0.3 13,957 + EX31_RS16505 0.89 -1.4 13,958 - EX31_RS16505 0.89 +1.0 13,966 - EX31_RS16505 0.89 +0.3 13,966 - EX31_RS16505 0.89 +0.4 13,966 - EX31_RS16505 0.89 +1.0 13,985 + -0.1 13,986 - +0.6 14,035 + -0.3 14,036 - +0.6 14,036 - +0.4 14,098 - +1.0 14,098 - -0.3 14,107 + -1.9 14,108 - +0.5 14,154 + -1.0 14,154 + +0.2 14,154 + -0.7 14,155 - +0.8 14,155 - +0.2 14,155 - +1.3 14,155 - -0.1 14,155 - +0.4 14,155 - -0.7 14,155 - -0.5 14,155 - +0.2 14,155 - -0.4 14,182 + +0.8 14,183 - -0.1 14,200 - +1.2 14,205 + +1.5 14,205 + -0.5 14,206 - +1.4 14,206 - +0.7 14,206 - +2.0 14,206 - +0.5 14,206 - +1.6 14,206 - +0.5 14,223 - +0.3 14,223 - +0.6 14,268 + +0.9 14,269 - +0.1 14,269 - +1.2 14,269 - +0.8 14,269 - +0.4 14,269 - +0.9 14,270 + -0.7 14,271 - +1.8 14,271 - +0.4 14,284 - +1.9 14,289 + +0.2 14,290 - +0.2 14,320 + +1.9 14,320 + -0.1 14,320 + +0.9 14,320 + +0.9 14,320 + +1.0 14,321 - +1.2 14,321 - +0.8 14,321 - +1.2 14,321 - +0.5 14,321 - +1.0 14,339 + +1.3 14,343 - +0.6 14,343 - +2.2 14,441 - +1.0 14,441 - +0.4 14,441 - +1.1 14,441 - +0.8 14,442 + +1.8 14,443 - +1.1 14,482 + +1.3 14,484 + +1.2 14,484 + +1.4 14,484 + +0.7 14,485 - -0.2 14,485 - -1.0 14,485 - -0.2 14,485 - +0.4 14,485 - -0.1 14,485 - -0.6 14,485 - +0.0 14,485 - -0.1 14,488 + +1.2 14,489 - +0.2 14,489 - +0.3 14,538 + +0.9 14,646 + EX31_RS16510 0.12 -1.4 14,646 + EX31_RS16510 0.12 -1.3 14,646 + EX31_RS16510 0.12 -2.1 14,647 - EX31_RS16510 0.12 -1.2 14,650 + EX31_RS16510 0.12 -0.5 14,650 + EX31_RS16510 0.12 -1.0 14,650 + EX31_RS16510 0.12 -0.8 14,650 + EX31_RS16510 0.12 -1.6 14,650 + EX31_RS16510 0.12 -0.4 14,650 + EX31_RS16510 0.12 -0.9 14,650 + EX31_RS16510 0.12 -1.8 14,651 - EX31_RS16510 0.12 -0.6 14,651 - EX31_RS16510 0.12 -1.2 14,651 - EX31_RS16510 0.12 -2.3 14,651 - EX31_RS16510 0.12 -0.4 14,651 - EX31_RS16510 0.12 -1.3 14,669 + EX31_RS16510 0.15 -0.4 14,669 + EX31_RS16510 0.15 -1.4 14,973 + EX31_RS16510 0.55 -0.7 14,973 + EX31_RS16510 0.55 -1.3 14,976 + EX31_RS16510 0.55 -0.4 14,978 + EX31_RS16510 0.55 -1.2 14,984 + EX31_RS16510 0.56 -1.0 15,163 - EX31_RS16510 0.80 -0.8 15,219 + EX31_RS16510 0.87 -1.3 15,220 - EX31_RS16510 0.87 -0.5 15,226 - EX31_RS16510 0.88 -1.4 15,266 + -1.8 15,314 - -0.1 15,443 + -0.7 15,456 - -0.7 15,558 - EX31_RS16515 0.16 +1.3 15,560 + EX31_RS16515 0.16 +0.2 15,561 - EX31_RS16515 0.16 +1.1 15,622 - EX31_RS16515 0.22 -0.3 15,623 + EX31_RS16515 0.22 -0.1 15,628 - EX31_RS16515 0.23 +0.3 15,628 - EX31_RS16515 0.23 +1.5 15,649 + EX31_RS16515 0.25 -0.2 15,650 - EX31_RS16515 0.25 +2.0 15,707 + EX31_RS16515 0.30 -0.5 15,822 - EX31_RS16515 0.41 +1.4 15,823 + EX31_RS16515 0.41 +0.8 15,858 - EX31_RS16515 0.44 +0.4 15,948 - EX31_RS16515 0.53 +1.5 16,062 + EX31_RS16515 0.64 +1.0 16,062 + EX31_RS16515 0.64 +0.7 16,239 - EX31_RS16515 0.80 -1.0 16,239 - EX31_RS16515 0.80 -0.2 16,262 + EX31_RS16515 0.83 +1.0
Or see this region's nucleotide sequence