Strain Fitness in Rahnella sp. WP5 around EX31_RS15150

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15145 and EX31_RS15150 are separated by 327 nucleotidesEX31_RS15150 and EX31_RS25380 are separated by 158 nucleotidesEX31_RS25380 and EX31_RS15155 are separated by 96 nucleotides EX31_RS15145: EX31_RS15145 - hydroxymethylbilane synthase, at 44,037 to 44,978 _RS15145 EX31_RS15150: EX31_RS15150 - class I adenylate cyclase, at 45,306 to 47,864 _RS15150 EX31_RS25380: EX31_RS25380 - hypothetical protein, at 48,023 to 48,226 _RS25380 EX31_RS15155: EX31_RS15155 - diaminopimelate epimerase, at 48,323 to 49,147 _RS15155 Position (kb) 45 46 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 44.993 kb on - strandat 45.014 kb on - strandat 45.025 kb on + strandat 45.025 kb on + strandat 45.026 kb on - strandat 45.026 kb on - strandat 45.026 kb on - strandat 45.026 kb on - strandat 45.041 kb on + strandat 45.041 kb on + strandat 45.041 kb on + strandat 45.041 kb on + strandat 45.042 kb on - strandat 45.042 kb on - strandat 45.055 kb on + strandat 45.056 kb on - strandat 45.108 kb on + strandat 45.131 kb on + strandat 45.131 kb on + strandat 45.131 kb on + strandat 45.131 kb on + strandat 45.131 kb on + strandat 45.131 kb on + strandat 45.131 kb on + strandat 45.132 kb on - strandat 45.132 kb on - strandat 45.132 kb on - strandat 45.132 kb on - strandat 45.132 kb on - strandat 45.145 kb on + strandat 45.146 kb on - strandat 45.210 kb on + strandat 45.239 kb on + strandat 45.239 kb on + strandat 45.239 kb on + strandat 45.239 kb on + strandat 45.239 kb on + strandat 45.289 kb on + strandat 45.289 kb on + strandat 45.289 kb on + strandat 45.289 kb on + strandat 45.289 kb on + strandat 45.289 kb on + strandat 45.289 kb on + strandat 45.289 kb on + strandat 45.290 kb on - strandat 45.290 kb on - strandat 45.309 kb on + strandat 45.315 kb on + strandat 45.945 kb on + strand, within EX31_RS15150at 46.522 kb on + strand, within EX31_RS15150at 46.547 kb on + strand, within EX31_RS15150at 46.572 kb on + strand, within EX31_RS15150at 46.572 kb on + strand, within EX31_RS15150at 46.651 kb on + strand, within EX31_RS15150at 46.652 kb on - strand, within EX31_RS15150at 46.658 kb on + strand, within EX31_RS15150at 46.658 kb on + strand, within EX31_RS15150at 46.659 kb on - strand, within EX31_RS15150at 46.699 kb on - strand, within EX31_RS15150at 46.704 kb on + strand, within EX31_RS15150at 46.704 kb on + strand, within EX31_RS15150at 46.704 kb on + strand, within EX31_RS15150at 46.705 kb on - strand, within EX31_RS15150at 46.705 kb on - strand, within EX31_RS15150at 46.705 kb on - strand, within EX31_RS15150at 46.755 kb on + strand, within EX31_RS15150at 46.757 kb on + strand, within EX31_RS15150at 46.757 kb on + strand, within EX31_RS15150at 46.935 kb on + strand, within EX31_RS15150at 46.935 kb on + strand, within EX31_RS15150at 46.936 kb on - strand, within EX31_RS15150at 47.084 kb on + strand, within EX31_RS15150at 47.084 kb on + strand, within EX31_RS15150at 47.124 kb on - strand, within EX31_RS15150at 47.124 kb on - strand, within EX31_RS15150at 47.230 kb on - strand, within EX31_RS15150at 47.242 kb on + strand, within EX31_RS15150at 47.242 kb on + strand, within EX31_RS15150at 47.425 kb on - strand, within EX31_RS15150at 47.425 kb on - strand, within EX31_RS15150at 47.570 kb on + strand, within EX31_RS15150at 47.573 kb on + strand, within EX31_RS15150at 47.574 kb on - strand, within EX31_RS15150at 47.577 kb on + strand, within EX31_RS15150at 47.577 kb on + strand, within EX31_RS15150at 47.577 kb on + strand, within EX31_RS15150at 47.577 kb on + strand, within EX31_RS15150at 47.578 kb on - strand, within EX31_RS15150at 47.578 kb on - strand, within EX31_RS15150at 47.578 kb on - strand, within EX31_RS15150at 47.578 kb on - strand, within EX31_RS15150at 47.610 kb on + strandat 47.610 kb on + strandat 47.610 kb on + strandat 47.610 kb on + strandat 47.611 kb on - strandat 47.664 kb on + strandat 47.665 kb on - strandat 47.706 kb on - strandat 47.862 kb on + strandat 47.863 kb on - strandat 47.863 kb on - strandat 47.863 kb on - strandat 47.878 kb on - strandat 47.899 kb on - strandat 47.918 kb on + strandat 47.918 kb on + strandat 47.918 kb on + strandat 47.985 kb on + strandat 47.985 kb on + strandat 47.985 kb on + strandat 47.985 kb on + strandat 47.985 kb on + strandat 47.986 kb on - strandat 47.986 kb on - strandat 48.007 kb on + strandat 48.007 kb on + strandat 48.019 kb on + strandat 48.036 kb on + strandat 48.036 kb on + strandat 48.060 kb on + strand, within EX31_RS25380at 48.088 kb on + strand, within EX31_RS25380at 48.088 kb on + strand, within EX31_RS25380at 48.088 kb on + strand, within EX31_RS25380at 48.088 kb on + strand, within EX31_RS25380at 48.088 kb on + strand, within EX31_RS25380at 48.088 kb on + strand, within EX31_RS25380at 48.088 kb on + strand, within EX31_RS25380at 48.101 kb on + strand, within EX31_RS25380at 48.101 kb on + strand, within EX31_RS25380at 48.127 kb on + strand, within EX31_RS25380at 48.476 kb on + strand, within EX31_RS15155at 48.604 kb on + strand, within EX31_RS15155at 48.605 kb on - strand, within EX31_RS15155at 48.738 kb on - strand, within EX31_RS15155at 48.765 kb on + strand, within EX31_RS15155at 48.804 kb on + strand, within EX31_RS15155

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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44,993 - +0.5
45,014 - +0.9
45,025 + +0.4
45,025 + -0.4
45,026 - +0.1
45,026 - +0.1
45,026 - +0.4
45,026 - -0.0
45,041 + +0.2
45,041 + +1.5
45,041 + -0.2
45,041 + -0.2
45,042 - -0.1
45,042 - +1.2
45,055 + +0.5
45,056 - +0.2
45,108 + -0.1
45,131 + +1.6
45,131 + -0.0
45,131 + +0.2
45,131 + -0.6
45,131 + -1.3
45,131 + -0.5
45,131 + +0.5
45,132 - +0.2
45,132 - -0.4
45,132 - +0.3
45,132 - -0.6
45,132 - -0.0
45,145 + +0.2
45,146 - -0.3
45,210 + -0.6
45,239 + +0.1
45,239 + +0.4
45,239 + +0.1
45,239 + +0.3
45,239 + +1.7
45,289 + +0.5
45,289 + -0.9
45,289 + +1.2
45,289 + +1.9
45,289 + -0.3
45,289 + -1.3
45,289 + +0.2
45,289 + -0.0
45,290 - +1.2
45,290 - +1.2
45,309 + +1.6
45,315 + +1.7
45,945 + EX31_RS15150 0.25 +0.4
46,522 + EX31_RS15150 0.48 +0.8
46,547 + EX31_RS15150 0.48 +1.0
46,572 + EX31_RS15150 0.49 -1.0
46,572 + EX31_RS15150 0.49 -0.6
46,651 + EX31_RS15150 0.53 +0.1
46,652 - EX31_RS15150 0.53 +0.5
46,658 + EX31_RS15150 0.53 +1.3
46,658 + EX31_RS15150 0.53 +0.5
46,659 - EX31_RS15150 0.53 -0.4
46,699 - EX31_RS15150 0.54 -0.4
46,704 + EX31_RS15150 0.55 +2.0
46,704 + EX31_RS15150 0.55 +1.4
46,704 + EX31_RS15150 0.55 +1.4
46,705 - EX31_RS15150 0.55 +0.2
46,705 - EX31_RS15150 0.55 +0.3
46,705 - EX31_RS15150 0.55 -0.8
46,755 + EX31_RS15150 0.57 +1.9
46,757 + EX31_RS15150 0.57 +0.9
46,757 + EX31_RS15150 0.57 -0.3
46,935 + EX31_RS15150 0.64 +0.8
46,935 + EX31_RS15150 0.64 +0.4
46,936 - EX31_RS15150 0.64 +1.1
47,084 + EX31_RS15150 0.69 +0.8
47,084 + EX31_RS15150 0.69 +0.8
47,124 - EX31_RS15150 0.71 +2.3
47,124 - EX31_RS15150 0.71 -0.1
47,230 - EX31_RS15150 0.75 +0.4
47,242 + EX31_RS15150 0.76 +1.3
47,242 + EX31_RS15150 0.76 +1.7
47,425 - EX31_RS15150 0.83 +1.2
47,425 - EX31_RS15150 0.83 +0.6
47,570 + EX31_RS15150 0.88 +0.1
47,573 + EX31_RS15150 0.89 +1.4
47,574 - EX31_RS15150 0.89 -0.4
47,577 + EX31_RS15150 0.89 +2.1
47,577 + EX31_RS15150 0.89 +1.0
47,577 + EX31_RS15150 0.89 -0.6
47,577 + EX31_RS15150 0.89 +0.3
47,578 - EX31_RS15150 0.89 +0.1
47,578 - EX31_RS15150 0.89 +0.7
47,578 - EX31_RS15150 0.89 -0.3
47,578 - EX31_RS15150 0.89 -1.4
47,610 + +0.5
47,610 + -1.0
47,610 + -0.1
47,610 + +1.1
47,611 - +0.6
47,664 + +1.0
47,665 - -0.3
47,706 - +0.2
47,862 + +0.2
47,863 - -0.8
47,863 - +0.8
47,863 - -1.3
47,878 - +0.0
47,899 - -0.1
47,918 + -0.8
47,918 + -0.1
47,918 + -0.3
47,985 + +0.9
47,985 + +1.3
47,985 + +0.6
47,985 + -0.2
47,985 + +0.1
47,986 - -0.8
47,986 - +0.7
48,007 + +0.0
48,007 + -0.5
48,019 + +1.0
48,036 + +0.5
48,036 + +0.3
48,060 + EX31_RS25380 0.18 +0.1
48,088 + EX31_RS25380 0.32 +1.8
48,088 + EX31_RS25380 0.32 +1.7
48,088 + EX31_RS25380 0.32 -0.2
48,088 + EX31_RS25380 0.32 +0.7
48,088 + EX31_RS25380 0.32 -0.1
48,088 + EX31_RS25380 0.32 +1.1
48,088 + EX31_RS25380 0.32 +0.5
48,101 + EX31_RS25380 0.38 -1.8
48,101 + EX31_RS25380 0.38 +0.8
48,127 + EX31_RS25380 0.51 -0.2
48,476 + EX31_RS15155 0.19 +0.5
48,604 + EX31_RS15155 0.34 +1.0
48,605 - EX31_RS15155 0.34 +0.9
48,738 - EX31_RS15155 0.50 -0.3
48,765 + EX31_RS15155 0.54 +0.3
48,804 + EX31_RS15155 0.58 -2.2

Or see this region's nucleotide sequence