Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15145 and EX31_RS15150 are separated by 327 nucleotides EX31_RS15150 and EX31_RS25380 are separated by 158 nucleotides EX31_RS25380 and EX31_RS15155 are separated by 96 nucleotides
EX31_RS15145: EX31_RS15145 - hydroxymethylbilane synthase, at 44,037 to 44,978
_RS15145
EX31_RS15150: EX31_RS15150 - class I adenylate cyclase, at 45,306 to 47,864
_RS15150
EX31_RS25380: EX31_RS25380 - hypothetical protein, at 48,023 to 48,226
_RS25380
EX31_RS15155: EX31_RS15155 - diaminopimelate epimerase, at 48,323 to 49,147
_RS15155
Position (kb)
45
46
47
48 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 44.993 kb on - strand at 45.014 kb on - strand at 45.025 kb on + strand at 45.025 kb on + strand at 45.026 kb on - strand at 45.026 kb on - strand at 45.026 kb on - strand at 45.026 kb on - strand at 45.041 kb on + strand at 45.041 kb on + strand at 45.041 kb on + strand at 45.041 kb on + strand at 45.042 kb on - strand at 45.042 kb on - strand at 45.055 kb on + strand at 45.056 kb on - strand at 45.108 kb on + strand at 45.131 kb on + strand at 45.131 kb on + strand at 45.131 kb on + strand at 45.131 kb on + strand at 45.131 kb on + strand at 45.131 kb on + strand at 45.131 kb on + strand at 45.132 kb on - strand at 45.132 kb on - strand at 45.132 kb on - strand at 45.132 kb on - strand at 45.132 kb on - strand at 45.145 kb on + strand at 45.146 kb on - strand at 45.210 kb on + strand at 45.239 kb on + strand at 45.239 kb on + strand at 45.239 kb on + strand at 45.239 kb on + strand at 45.239 kb on + strand at 45.289 kb on + strand at 45.289 kb on + strand at 45.289 kb on + strand at 45.289 kb on + strand at 45.289 kb on + strand at 45.289 kb on + strand at 45.289 kb on + strand at 45.289 kb on + strand at 45.290 kb on - strand at 45.290 kb on - strand at 45.309 kb on + strand at 45.315 kb on + strand at 45.945 kb on + strand, within EX31_RS15150 at 46.522 kb on + strand, within EX31_RS15150 at 46.547 kb on + strand, within EX31_RS15150 at 46.572 kb on + strand, within EX31_RS15150 at 46.572 kb on + strand, within EX31_RS15150 at 46.651 kb on + strand, within EX31_RS15150 at 46.652 kb on - strand, within EX31_RS15150 at 46.658 kb on + strand, within EX31_RS15150 at 46.658 kb on + strand, within EX31_RS15150 at 46.659 kb on - strand, within EX31_RS15150 at 46.699 kb on - strand, within EX31_RS15150 at 46.704 kb on + strand, within EX31_RS15150 at 46.704 kb on + strand, within EX31_RS15150 at 46.704 kb on + strand, within EX31_RS15150 at 46.705 kb on - strand, within EX31_RS15150 at 46.705 kb on - strand, within EX31_RS15150 at 46.705 kb on - strand, within EX31_RS15150 at 46.755 kb on + strand, within EX31_RS15150 at 46.757 kb on + strand, within EX31_RS15150 at 46.757 kb on + strand, within EX31_RS15150 at 46.935 kb on + strand, within EX31_RS15150 at 46.935 kb on + strand, within EX31_RS15150 at 46.936 kb on - strand, within EX31_RS15150 at 47.084 kb on + strand, within EX31_RS15150 at 47.084 kb on + strand, within EX31_RS15150 at 47.124 kb on - strand, within EX31_RS15150 at 47.124 kb on - strand, within EX31_RS15150 at 47.230 kb on - strand, within EX31_RS15150 at 47.242 kb on + strand, within EX31_RS15150 at 47.242 kb on + strand, within EX31_RS15150 at 47.425 kb on - strand, within EX31_RS15150 at 47.425 kb on - strand, within EX31_RS15150 at 47.570 kb on + strand, within EX31_RS15150 at 47.573 kb on + strand, within EX31_RS15150 at 47.574 kb on - strand, within EX31_RS15150 at 47.577 kb on + strand, within EX31_RS15150 at 47.577 kb on + strand, within EX31_RS15150 at 47.577 kb on + strand, within EX31_RS15150 at 47.577 kb on + strand, within EX31_RS15150 at 47.578 kb on - strand, within EX31_RS15150 at 47.578 kb on - strand, within EX31_RS15150 at 47.578 kb on - strand, within EX31_RS15150 at 47.578 kb on - strand, within EX31_RS15150 at 47.610 kb on + strand at 47.610 kb on + strand at 47.610 kb on + strand at 47.610 kb on + strand at 47.611 kb on - strand at 47.664 kb on + strand at 47.665 kb on - strand at 47.706 kb on - strand at 47.862 kb on + strand at 47.863 kb on - strand at 47.863 kb on - strand at 47.863 kb on - strand at 47.878 kb on - strand at 47.899 kb on - strand at 47.918 kb on + strand at 47.918 kb on + strand at 47.918 kb on + strand at 47.985 kb on + strand at 47.985 kb on + strand at 47.985 kb on + strand at 47.985 kb on + strand at 47.985 kb on + strand at 47.986 kb on - strand at 47.986 kb on - strand at 48.007 kb on + strand at 48.007 kb on + strand at 48.019 kb on + strand at 48.036 kb on + strand at 48.036 kb on + strand at 48.060 kb on + strand, within EX31_RS25380 at 48.088 kb on + strand, within EX31_RS25380 at 48.088 kb on + strand, within EX31_RS25380 at 48.088 kb on + strand, within EX31_RS25380 at 48.088 kb on + strand, within EX31_RS25380 at 48.088 kb on + strand, within EX31_RS25380 at 48.088 kb on + strand, within EX31_RS25380 at 48.088 kb on + strand, within EX31_RS25380 at 48.101 kb on + strand, within EX31_RS25380 at 48.101 kb on + strand, within EX31_RS25380 at 48.127 kb on + strand, within EX31_RS25380 at 48.476 kb on + strand, within EX31_RS15155 at 48.604 kb on + strand, within EX31_RS15155 at 48.605 kb on - strand, within EX31_RS15155 at 48.738 kb on - strand, within EX31_RS15155 at 48.765 kb on + strand, within EX31_RS15155 at 48.804 kb on + strand, within EX31_RS15155
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 44,993 - +0.5 45,014 - +0.9 45,025 + +0.4 45,025 + -0.4 45,026 - +0.1 45,026 - +0.1 45,026 - +0.4 45,026 - -0.0 45,041 + +0.2 45,041 + +1.5 45,041 + -0.2 45,041 + -0.2 45,042 - -0.1 45,042 - +1.2 45,055 + +0.5 45,056 - +0.2 45,108 + -0.1 45,131 + +1.6 45,131 + -0.0 45,131 + +0.2 45,131 + -0.6 45,131 + -1.3 45,131 + -0.5 45,131 + +0.5 45,132 - +0.2 45,132 - -0.4 45,132 - +0.3 45,132 - -0.6 45,132 - -0.0 45,145 + +0.2 45,146 - -0.3 45,210 + -0.6 45,239 + +0.1 45,239 + +0.4 45,239 + +0.1 45,239 + +0.3 45,239 + +1.7 45,289 + +0.5 45,289 + -0.9 45,289 + +1.2 45,289 + +1.9 45,289 + -0.3 45,289 + -1.3 45,289 + +0.2 45,289 + -0.0 45,290 - +1.2 45,290 - +1.2 45,309 + +1.6 45,315 + +1.7 45,945 + EX31_RS15150 0.25 +0.4 46,522 + EX31_RS15150 0.48 +0.8 46,547 + EX31_RS15150 0.48 +1.0 46,572 + EX31_RS15150 0.49 -1.0 46,572 + EX31_RS15150 0.49 -0.6 46,651 + EX31_RS15150 0.53 +0.1 46,652 - EX31_RS15150 0.53 +0.5 46,658 + EX31_RS15150 0.53 +1.3 46,658 + EX31_RS15150 0.53 +0.5 46,659 - EX31_RS15150 0.53 -0.4 46,699 - EX31_RS15150 0.54 -0.4 46,704 + EX31_RS15150 0.55 +2.0 46,704 + EX31_RS15150 0.55 +1.4 46,704 + EX31_RS15150 0.55 +1.4 46,705 - EX31_RS15150 0.55 +0.2 46,705 - EX31_RS15150 0.55 +0.3 46,705 - EX31_RS15150 0.55 -0.8 46,755 + EX31_RS15150 0.57 +1.9 46,757 + EX31_RS15150 0.57 +0.9 46,757 + EX31_RS15150 0.57 -0.3 46,935 + EX31_RS15150 0.64 +0.8 46,935 + EX31_RS15150 0.64 +0.4 46,936 - EX31_RS15150 0.64 +1.1 47,084 + EX31_RS15150 0.69 +0.8 47,084 + EX31_RS15150 0.69 +0.8 47,124 - EX31_RS15150 0.71 +2.3 47,124 - EX31_RS15150 0.71 -0.1 47,230 - EX31_RS15150 0.75 +0.4 47,242 + EX31_RS15150 0.76 +1.3 47,242 + EX31_RS15150 0.76 +1.7 47,425 - EX31_RS15150 0.83 +1.2 47,425 - EX31_RS15150 0.83 +0.6 47,570 + EX31_RS15150 0.88 +0.1 47,573 + EX31_RS15150 0.89 +1.4 47,574 - EX31_RS15150 0.89 -0.4 47,577 + EX31_RS15150 0.89 +2.1 47,577 + EX31_RS15150 0.89 +1.0 47,577 + EX31_RS15150 0.89 -0.6 47,577 + EX31_RS15150 0.89 +0.3 47,578 - EX31_RS15150 0.89 +0.1 47,578 - EX31_RS15150 0.89 +0.7 47,578 - EX31_RS15150 0.89 -0.3 47,578 - EX31_RS15150 0.89 -1.4 47,610 + +0.5 47,610 + -1.0 47,610 + -0.1 47,610 + +1.1 47,611 - +0.6 47,664 + +1.0 47,665 - -0.3 47,706 - +0.2 47,862 + +0.2 47,863 - -0.8 47,863 - +0.8 47,863 - -1.3 47,878 - +0.0 47,899 - -0.1 47,918 + -0.8 47,918 + -0.1 47,918 + -0.3 47,985 + +0.9 47,985 + +1.3 47,985 + +0.6 47,985 + -0.2 47,985 + +0.1 47,986 - -0.8 47,986 - +0.7 48,007 + +0.0 48,007 + -0.5 48,019 + +1.0 48,036 + +0.5 48,036 + +0.3 48,060 + EX31_RS25380 0.18 +0.1 48,088 + EX31_RS25380 0.32 +1.8 48,088 + EX31_RS25380 0.32 +1.7 48,088 + EX31_RS25380 0.32 -0.2 48,088 + EX31_RS25380 0.32 +0.7 48,088 + EX31_RS25380 0.32 -0.1 48,088 + EX31_RS25380 0.32 +1.1 48,088 + EX31_RS25380 0.32 +0.5 48,101 + EX31_RS25380 0.38 -1.8 48,101 + EX31_RS25380 0.38 +0.8 48,127 + EX31_RS25380 0.51 -0.2 48,476 + EX31_RS15155 0.19 +0.5 48,604 + EX31_RS15155 0.34 +1.0 48,605 - EX31_RS15155 0.34 +0.9 48,738 - EX31_RS15155 0.50 -0.3 48,765 + EX31_RS15155 0.54 +0.3 48,804 + EX31_RS15155 0.58 -2.2
Or see this region's nucleotide sequence