Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14690 and EX31_RS14695 are separated by 255 nucleotides EX31_RS14695 and EX31_RS14700 overlap by 4 nucleotides EX31_RS14700 and EX31_RS14705 are separated by 68 nucleotides EX31_RS14705 and EX31_RS14710 are separated by 66 nucleotides
EX31_RS14690: EX31_RS14690 - helix-turn-helix transcriptional regulator, at 33,140 to 34,003
_RS14690
EX31_RS14695: EX31_RS14695 - lysozyme, at 34,259 to 34,765
_RS14695
EX31_RS14700: EX31_RS14700 - hypothetical protein, at 34,762 to 35,142
_RS14700
EX31_RS14705: EX31_RS14705 - hypothetical protein, at 35,211 to 35,513
_RS14705
EX31_RS14710: EX31_RS14710 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 35,580 to 37,859
_RS14710
Position (kb) 34
35
36 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 33.898 kb on - strand, within EX31_RS14690 at 33.898 kb on - strand, within EX31_RS14690 at 33.936 kb on + strand at 33.936 kb on + strand at 33.968 kb on + strand at 33.969 kb on - strand at 33.969 kb on - strand at 33.969 kb on - strand at 33.977 kb on + strand at 33.977 kb on + strand at 33.978 kb on - strand at 33.978 kb on - strand at 34.012 kb on + strand at 34.013 kb on - strand at 34.013 kb on - strand at 34.156 kb on + strand at 34.157 kb on - strand at 34.238 kb on + strand at 34.278 kb on + strand at 34.278 kb on + strand at 34.320 kb on + strand, within EX31_RS14695 at 34.320 kb on + strand, within EX31_RS14695 at 34.321 kb on - strand, within EX31_RS14695 at 34.321 kb on - strand, within EX31_RS14695 at 34.321 kb on - strand, within EX31_RS14695 at 34.326 kb on + strand, within EX31_RS14695 at 34.327 kb on - strand, within EX31_RS14695 at 34.441 kb on + strand, within EX31_RS14695 at 34.528 kb on + strand, within EX31_RS14695 at 34.529 kb on - strand, within EX31_RS14695 at 34.529 kb on - strand, within EX31_RS14695 at 34.532 kb on + strand, within EX31_RS14695 at 34.533 kb on - strand, within EX31_RS14695 at 34.533 kb on - strand, within EX31_RS14695 at 34.533 kb on - strand, within EX31_RS14695 at 34.533 kb on - strand, within EX31_RS14695 at 34.577 kb on + strand, within EX31_RS14695 at 34.578 kb on - strand, within EX31_RS14695 at 34.578 kb on - strand, within EX31_RS14695 at 34.747 kb on + strand at 34.748 kb on - strand at 34.775 kb on + strand at 34.844 kb on + strand, within EX31_RS14700 at 34.844 kb on + strand, within EX31_RS14700 at 34.844 kb on + strand, within EX31_RS14700 at 34.845 kb on - strand, within EX31_RS14700 at 34.845 kb on - strand, within EX31_RS14700 at 34.845 kb on - strand, within EX31_RS14700 at 34.845 kb on - strand, within EX31_RS14700 at 34.845 kb on - strand, within EX31_RS14700 at 34.869 kb on + strand, within EX31_RS14700 at 34.869 kb on + strand, within EX31_RS14700 at 34.869 kb on + strand, within EX31_RS14700 at 34.869 kb on + strand, within EX31_RS14700 at 34.870 kb on - strand, within EX31_RS14700 at 34.870 kb on - strand, within EX31_RS14700 at 34.870 kb on - strand, within EX31_RS14700 at 34.870 kb on - strand, within EX31_RS14700 at 34.920 kb on + strand, within EX31_RS14700 at 34.928 kb on + strand, within EX31_RS14700 at 34.928 kb on + strand, within EX31_RS14700 at 34.928 kb on + strand, within EX31_RS14700 at 34.928 kb on + strand, within EX31_RS14700 at 34.928 kb on + strand, within EX31_RS14700 at 34.928 kb on + strand, within EX31_RS14700 at 34.928 kb on + strand, within EX31_RS14700 at 34.929 kb on - strand, within EX31_RS14700 at 34.929 kb on - strand, within EX31_RS14700 at 34.929 kb on - strand, within EX31_RS14700 at 34.983 kb on + strand, within EX31_RS14700 at 35.137 kb on - strand at 35.205 kb on + strand at 35.206 kb on - strand at 35.255 kb on + strand, within EX31_RS14705 at 35.255 kb on + strand, within EX31_RS14705 at 35.255 kb on + strand, within EX31_RS14705 at 35.280 kb on - strand, within EX31_RS14705 at 35.280 kb on - strand, within EX31_RS14705 at 35.294 kb on + strand, within EX31_RS14705 at 35.323 kb on - strand, within EX31_RS14705 at 35.380 kb on + strand, within EX31_RS14705 at 35.380 kb on + strand, within EX31_RS14705 at 35.380 kb on + strand, within EX31_RS14705 at 35.380 kb on + strand, within EX31_RS14705 at 35.380 kb on + strand, within EX31_RS14705 at 35.380 kb on + strand, within EX31_RS14705 at 35.380 kb on + strand, within EX31_RS14705 at 35.380 kb on + strand, within EX31_RS14705 at 35.380 kb on + strand, within EX31_RS14705 at 35.381 kb on - strand, within EX31_RS14705 at 35.381 kb on - strand, within EX31_RS14705 at 35.381 kb on - strand, within EX31_RS14705 at 35.381 kb on - strand, within EX31_RS14705 at 35.381 kb on - strand, within EX31_RS14705 at 35.381 kb on - strand, within EX31_RS14705 at 35.382 kb on + strand, within EX31_RS14705 at 35.383 kb on - strand, within EX31_RS14705 at 35.383 kb on - strand, within EX31_RS14705 at 35.383 kb on - strand, within EX31_RS14705 at 35.383 kb on - strand, within EX31_RS14705 at 35.385 kb on + strand, within EX31_RS14705 at 35.385 kb on + strand, within EX31_RS14705 at 35.385 kb on + strand, within EX31_RS14705 at 35.385 kb on + strand, within EX31_RS14705 at 35.385 kb on + strand, within EX31_RS14705 at 35.386 kb on - strand, within EX31_RS14705 at 35.386 kb on - strand, within EX31_RS14705 at 35.386 kb on - strand, within EX31_RS14705 at 35.472 kb on + strand, within EX31_RS14705 at 35.511 kb on + strand at 35.560 kb on + strand at 35.560 kb on + strand at 35.560 kb on + strand at 35.560 kb on + strand at 35.560 kb on + strand at 35.560 kb on + strand at 35.560 kb on + strand at 35.561 kb on - strand at 35.561 kb on - strand at 35.561 kb on - strand at 35.561 kb on - strand at 35.561 kb on - strand at 35.566 kb on + strand at 35.567 kb on - strand at 35.567 kb on - strand at 35.705 kb on + strand at 35.705 kb on + strand at 35.721 kb on - strand at 35.999 kb on - strand, within EX31_RS14710
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 33,898 - EX31_RS14690 0.88 +1.8 33,898 - EX31_RS14690 0.88 -0.6 33,936 + -0.7 33,936 + +0.1 33,968 + +1.4 33,969 - -1.4 33,969 - +1.1 33,969 - -0.9 33,977 + -0.5 33,977 + +0.1 33,978 - -0.3 33,978 - +1.3 34,012 + -0.1 34,013 - +0.0 34,013 - -0.6 34,156 + -0.7 34,157 - +0.9 34,238 + +0.3 34,278 + +0.1 34,278 + +0.5 34,320 + EX31_RS14695 0.12 -0.0 34,320 + EX31_RS14695 0.12 -0.5 34,321 - EX31_RS14695 0.12 -0.5 34,321 - EX31_RS14695 0.12 +0.3 34,321 - EX31_RS14695 0.12 -0.4 34,326 + EX31_RS14695 0.13 +0.4 34,327 - EX31_RS14695 0.13 -0.4 34,441 + EX31_RS14695 0.36 -1.1 34,528 + EX31_RS14695 0.53 +0.2 34,529 - EX31_RS14695 0.53 -0.9 34,529 - EX31_RS14695 0.53 +0.4 34,532 + EX31_RS14695 0.54 +0.3 34,533 - EX31_RS14695 0.54 -0.9 34,533 - EX31_RS14695 0.54 +0.6 34,533 - EX31_RS14695 0.54 +0.8 34,533 - EX31_RS14695 0.54 -1.4 34,577 + EX31_RS14695 0.63 -0.3 34,578 - EX31_RS14695 0.63 +0.3 34,578 - EX31_RS14695 0.63 +0.4 34,747 + -1.0 34,748 - +0.1 34,775 + -0.6 34,844 + EX31_RS14700 0.22 -0.5 34,844 + EX31_RS14700 0.22 +0.9 34,844 + EX31_RS14700 0.22 -0.5 34,845 - EX31_RS14700 0.22 +0.7 34,845 - EX31_RS14700 0.22 -1.5 34,845 - EX31_RS14700 0.22 -1.8 34,845 - EX31_RS14700 0.22 +0.8 34,845 - EX31_RS14700 0.22 -0.2 34,869 + EX31_RS14700 0.28 -0.5 34,869 + EX31_RS14700 0.28 -0.7 34,869 + EX31_RS14700 0.28 -0.8 34,869 + EX31_RS14700 0.28 +0.9 34,870 - EX31_RS14700 0.28 -0.2 34,870 - EX31_RS14700 0.28 -0.2 34,870 - EX31_RS14700 0.28 -1.0 34,870 - EX31_RS14700 0.28 +0.7 34,920 + EX31_RS14700 0.41 -0.0 34,928 + EX31_RS14700 0.44 -0.1 34,928 + EX31_RS14700 0.44 +0.4 34,928 + EX31_RS14700 0.44 -1.0 34,928 + EX31_RS14700 0.44 -0.0 34,928 + EX31_RS14700 0.44 -1.4 34,928 + EX31_RS14700 0.44 -0.7 34,928 + EX31_RS14700 0.44 +0.4 34,929 - EX31_RS14700 0.44 -0.5 34,929 - EX31_RS14700 0.44 +0.7 34,929 - EX31_RS14700 0.44 -0.4 34,983 + EX31_RS14700 0.58 +0.3 35,137 - +0.7 35,205 + -0.4 35,206 - +0.9 35,255 + EX31_RS14705 0.15 +1.7 35,255 + EX31_RS14705 0.15 +0.1 35,255 + EX31_RS14705 0.15 +1.3 35,280 - EX31_RS14705 0.23 -0.1 35,280 - EX31_RS14705 0.23 -0.9 35,294 + EX31_RS14705 0.27 +0.5 35,323 - EX31_RS14705 0.37 -0.6 35,380 + EX31_RS14705 0.56 -1.2 35,380 + EX31_RS14705 0.56 +0.9 35,380 + EX31_RS14705 0.56 -0.5 35,380 + EX31_RS14705 0.56 +1.2 35,380 + EX31_RS14705 0.56 +1.1 35,380 + EX31_RS14705 0.56 +1.2 35,380 + EX31_RS14705 0.56 +0.9 35,380 + EX31_RS14705 0.56 -0.5 35,380 + EX31_RS14705 0.56 -0.1 35,381 - EX31_RS14705 0.56 -0.1 35,381 - EX31_RS14705 0.56 -0.4 35,381 - EX31_RS14705 0.56 +1.2 35,381 - EX31_RS14705 0.56 -1.3 35,381 - EX31_RS14705 0.56 +0.3 35,381 - EX31_RS14705 0.56 -0.5 35,382 + EX31_RS14705 0.56 -0.2 35,383 - EX31_RS14705 0.57 -0.1 35,383 - EX31_RS14705 0.57 +0.5 35,383 - EX31_RS14705 0.57 +0.0 35,383 - EX31_RS14705 0.57 +0.3 35,385 + EX31_RS14705 0.57 +1.0 35,385 + EX31_RS14705 0.57 +0.1 35,385 + EX31_RS14705 0.57 -0.2 35,385 + EX31_RS14705 0.57 -0.2 35,385 + EX31_RS14705 0.57 -0.6 35,386 - EX31_RS14705 0.58 -0.7 35,386 - EX31_RS14705 0.58 -0.4 35,386 - EX31_RS14705 0.58 +0.2 35,472 + EX31_RS14705 0.86 -0.0 35,511 + +1.3 35,560 + -1.2 35,560 + -1.2 35,560 + -0.6 35,560 + -1.2 35,560 + -1.1 35,560 + -0.6 35,560 + +0.3 35,561 - +0.2 35,561 - +1.1 35,561 - -0.3 35,561 - +0.3 35,561 - -0.9 35,566 + +0.2 35,567 - +1.3 35,567 - -0.3 35,705 + -2.1 35,705 + -3.1 35,721 - -3.3 35,999 - EX31_RS14710 0.18 -4.0
Or see this region's nucleotide sequence