Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13355 and EX31_RS13365 are separated by 189 nucleotides EX31_RS13365 and EX31_RS13370 are separated by 157 nucleotides
EX31_RS13355: EX31_RS13355 - hypothetical protein, at 102,755 to 103,468
_RS13355
EX31_RS13365: EX31_RS13365 - type VI secretion system tube protein Hcp, at 103,658 to 104,137
_RS13365
EX31_RS13370: EX31_RS13370 - efflux transporter outer membrane subunit, at 104,295 to 105,743
_RS13370
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.675 kb on + strand at 102.676 kb on - strand at 102.694 kb on + strand at 102.694 kb on + strand at 102.695 kb on - strand at 102.697 kb on - strand at 102.710 kb on - strand at 102.721 kb on + strand at 102.771 kb on - strand at 102.771 kb on - strand at 102.774 kb on + strand at 102.774 kb on + strand at 102.774 kb on + strand at 102.775 kb on - strand at 102.775 kb on - strand at 102.775 kb on - strand at 102.775 kb on - strand at 102.804 kb on + strand at 102.832 kb on + strand, within EX31_RS13355 at 102.832 kb on + strand, within EX31_RS13355 at 102.832 kb on + strand, within EX31_RS13355 at 102.832 kb on + strand, within EX31_RS13355 at 102.832 kb on + strand, within EX31_RS13355 at 102.833 kb on - strand, within EX31_RS13355 at 102.833 kb on - strand, within EX31_RS13355 at 102.833 kb on - strand, within EX31_RS13355 at 102.833 kb on - strand, within EX31_RS13355 at 102.833 kb on - strand, within EX31_RS13355 at 102.836 kb on + strand, within EX31_RS13355 at 102.836 kb on + strand, within EX31_RS13355 at 102.836 kb on + strand, within EX31_RS13355 at 102.836 kb on + strand, within EX31_RS13355 at 102.837 kb on - strand, within EX31_RS13355 at 102.837 kb on - strand, within EX31_RS13355 at 102.837 kb on - strand, within EX31_RS13355 at 102.865 kb on + strand, within EX31_RS13355 at 102.868 kb on + strand, within EX31_RS13355 at 102.869 kb on - strand, within EX31_RS13355 at 102.899 kb on + strand, within EX31_RS13355 at 102.901 kb on + strand, within EX31_RS13355 at 102.946 kb on - strand, within EX31_RS13355 at 103.009 kb on - strand, within EX31_RS13355 at 103.021 kb on - strand, within EX31_RS13355 at 103.023 kb on - strand, within EX31_RS13355 at 103.023 kb on - strand, within EX31_RS13355 at 103.041 kb on + strand, within EX31_RS13355 at 103.045 kb on + strand, within EX31_RS13355 at 103.045 kb on + strand, within EX31_RS13355 at 103.045 kb on + strand, within EX31_RS13355 at 103.045 kb on + strand, within EX31_RS13355 at 103.112 kb on - strand, within EX31_RS13355 at 103.189 kb on + strand, within EX31_RS13355 at 103.189 kb on + strand, within EX31_RS13355 at 103.189 kb on + strand, within EX31_RS13355 at 103.190 kb on - strand, within EX31_RS13355 at 103.190 kb on - strand, within EX31_RS13355 at 103.226 kb on - strand, within EX31_RS13355 at 103.226 kb on - strand, within EX31_RS13355 at 103.388 kb on - strand, within EX31_RS13355 at 103.390 kb on - strand, within EX31_RS13355 at 103.542 kb on + strand at 103.705 kb on + strand at 103.705 kb on + strand at 103.705 kb on + strand at 103.706 kb on - strand, within EX31_RS13365 at 103.722 kb on + strand, within EX31_RS13365 at 103.722 kb on + strand, within EX31_RS13365 at 103.723 kb on - strand, within EX31_RS13365 at 103.744 kb on + strand, within EX31_RS13365 at 103.745 kb on - strand, within EX31_RS13365 at 103.746 kb on + strand, within EX31_RS13365 at 103.746 kb on + strand, within EX31_RS13365 at 103.746 kb on + strand, within EX31_RS13365 at 103.746 kb on + strand, within EX31_RS13365 at 103.746 kb on + strand, within EX31_RS13365 at 103.752 kb on + strand, within EX31_RS13365 at 103.753 kb on - strand, within EX31_RS13365 at 103.773 kb on + strand, within EX31_RS13365 at 103.774 kb on - strand, within EX31_RS13365 at 103.779 kb on + strand, within EX31_RS13365 at 103.779 kb on + strand, within EX31_RS13365 at 103.786 kb on - strand, within EX31_RS13365 at 103.821 kb on + strand, within EX31_RS13365 at 103.872 kb on + strand, within EX31_RS13365 at 103.872 kb on + strand, within EX31_RS13365 at 103.917 kb on + strand, within EX31_RS13365 at 104.010 kb on + strand, within EX31_RS13365 at 104.011 kb on - strand, within EX31_RS13365 at 104.047 kb on + strand, within EX31_RS13365 at 104.052 kb on + strand, within EX31_RS13365 at 104.072 kb on - strand, within EX31_RS13365 at 104.081 kb on + strand, within EX31_RS13365 at 104.081 kb on + strand, within EX31_RS13365 at 104.092 kb on + strand at 104.098 kb on + strand at 104.125 kb on + strand at 104.161 kb on + strand at 104.161 kb on + strand at 104.161 kb on + strand at 104.161 kb on + strand at 104.161 kb on + strand at 104.161 kb on + strand at 104.162 kb on - strand at 104.162 kb on - strand at 104.162 kb on - strand at 104.166 kb on + strand at 104.206 kb on + strand at 104.206 kb on + strand at 104.206 kb on + strand at 104.207 kb on - strand at 104.207 kb on - strand at 104.207 kb on - strand at 104.260 kb on + strand at 104.260 kb on + strand at 104.260 kb on + strand at 104.260 kb on + strand at 104.261 kb on - strand at 104.261 kb on - strand at 104.261 kb on - strand at 104.261 kb on - strand at 104.281 kb on + strand at 104.296 kb on + strand at 104.296 kb on + strand at 104.296 kb on + strand at 104.297 kb on - strand at 104.297 kb on - strand at 104.297 kb on - strand at 104.297 kb on - strand at 104.300 kb on + strand at 104.300 kb on + strand at 104.301 kb on - strand at 104.455 kb on + strand, within EX31_RS13370 at 104.464 kb on + strand, within EX31_RS13370 at 104.464 kb on + strand, within EX31_RS13370 at 104.464 kb on + strand, within EX31_RS13370 at 104.464 kb on + strand, within EX31_RS13370 at 104.464 kb on + strand, within EX31_RS13370 at 104.464 kb on + strand, within EX31_RS13370 at 104.465 kb on - strand, within EX31_RS13370 at 104.465 kb on - strand, within EX31_RS13370 at 104.552 kb on - strand, within EX31_RS13370 at 104.614 kb on + strand, within EX31_RS13370 at 104.614 kb on + strand, within EX31_RS13370 at 104.614 kb on + strand, within EX31_RS13370 at 104.614 kb on + strand, within EX31_RS13370 at 104.615 kb on - strand, within EX31_RS13370 at 104.615 kb on - strand, within EX31_RS13370 at 104.615 kb on - strand, within EX31_RS13370 at 104.665 kb on - strand, within EX31_RS13370 at 104.724 kb on - strand, within EX31_RS13370 at 104.761 kb on - strand, within EX31_RS13370 at 104.761 kb on - strand, within EX31_RS13370 at 104.761 kb on - strand, within EX31_RS13370 at 104.761 kb on - strand, within EX31_RS13370 at 104.779 kb on + strand, within EX31_RS13370 at 104.779 kb on + strand, within EX31_RS13370 at 104.779 kb on + strand, within EX31_RS13370 at 104.779 kb on + strand, within EX31_RS13370 at 104.779 kb on + strand, within EX31_RS13370 at 104.780 kb on - strand, within EX31_RS13370 at 104.780 kb on - strand, within EX31_RS13370 at 104.780 kb on - strand, within EX31_RS13370 at 104.780 kb on - strand, within EX31_RS13370 at 104.907 kb on + strand, within EX31_RS13370 at 104.908 kb on - strand, within EX31_RS13370 at 104.908 kb on - strand, within EX31_RS13370 at 104.956 kb on - strand, within EX31_RS13370 at 105.062 kb on + strand, within EX31_RS13370 at 105.063 kb on - strand, within EX31_RS13370 at 105.063 kb on - strand, within EX31_RS13370 at 105.077 kb on - strand, within EX31_RS13370 at 105.077 kb on - strand, within EX31_RS13370 at 105.077 kb on - strand, within EX31_RS13370 at 105.109 kb on + strand, within EX31_RS13370 at 105.110 kb on - strand, within EX31_RS13370 at 105.119 kb on + strand, within EX31_RS13370 at 105.120 kb on - strand, within EX31_RS13370 at 105.120 kb on - strand, within EX31_RS13370 at 105.120 kb on - strand, within EX31_RS13370 at 105.120 kb on - strand, within EX31_RS13370 at 105.128 kb on + strand, within EX31_RS13370 at 105.128 kb on + strand, within EX31_RS13370 at 105.128 kb on + strand, within EX31_RS13370 at 105.128 kb on + strand, within EX31_RS13370 at 105.128 kb on + strand, within EX31_RS13370 at 105.129 kb on - strand, within EX31_RS13370 at 105.130 kb on + strand, within EX31_RS13370 at 105.130 kb on + strand, within EX31_RS13370 at 105.130 kb on + strand, within EX31_RS13370 at 105.130 kb on + strand, within EX31_RS13370 at 105.131 kb on - strand, within EX31_RS13370 at 105.131 kb on - strand, within EX31_RS13370 at 105.131 kb on - strand, within EX31_RS13370 at 105.131 kb on - strand, within EX31_RS13370 at 105.131 kb on - strand, within EX31_RS13370 at 105.131 kb on - strand, within EX31_RS13370
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 102,675 + -0.8 102,676 - -0.4 102,694 + -2.0 102,694 + +0.6 102,695 - +1.4 102,697 - -0.7 102,710 - -0.5 102,721 + +1.0 102,771 - -0.5 102,771 - -1.0 102,774 + -0.0 102,774 + -0.9 102,774 + -0.8 102,775 - -0.2 102,775 - -1.3 102,775 - -0.6 102,775 - +0.2 102,804 + +0.2 102,832 + EX31_RS13355 0.11 -1.0 102,832 + EX31_RS13355 0.11 -1.4 102,832 + EX31_RS13355 0.11 +0.2 102,832 + EX31_RS13355 0.11 -0.5 102,832 + EX31_RS13355 0.11 -0.7 102,833 - EX31_RS13355 0.11 +0.7 102,833 - EX31_RS13355 0.11 -0.4 102,833 - EX31_RS13355 0.11 -0.3 102,833 - EX31_RS13355 0.11 -1.7 102,833 - EX31_RS13355 0.11 -0.9 102,836 + EX31_RS13355 0.11 -1.4 102,836 + EX31_RS13355 0.11 -1.4 102,836 + EX31_RS13355 0.11 -1.4 102,836 + EX31_RS13355 0.11 +1.4 102,837 - EX31_RS13355 0.11 -1.6 102,837 - EX31_RS13355 0.11 +1.0 102,837 - EX31_RS13355 0.11 -0.3 102,865 + EX31_RS13355 0.15 -0.6 102,868 + EX31_RS13355 0.16 -0.1 102,869 - EX31_RS13355 0.16 -0.7 102,899 + EX31_RS13355 0.20 +0.8 102,901 + EX31_RS13355 0.20 -0.6 102,946 - EX31_RS13355 0.27 -0.5 103,009 - EX31_RS13355 0.36 +1.1 103,021 - EX31_RS13355 0.37 +0.9 103,023 - EX31_RS13355 0.38 -0.4 103,023 - EX31_RS13355 0.38 -1.4 103,041 + EX31_RS13355 0.40 +0.3 103,045 + EX31_RS13355 0.41 -0.2 103,045 + EX31_RS13355 0.41 -0.2 103,045 + EX31_RS13355 0.41 +0.6 103,045 + EX31_RS13355 0.41 +0.8 103,112 - EX31_RS13355 0.50 +0.2 103,189 + EX31_RS13355 0.61 +0.0 103,189 + EX31_RS13355 0.61 -1.1 103,189 + EX31_RS13355 0.61 +0.3 103,190 - EX31_RS13355 0.61 +0.1 103,190 - EX31_RS13355 0.61 +0.1 103,226 - EX31_RS13355 0.66 +1.3 103,226 - EX31_RS13355 0.66 -0.9 103,388 - EX31_RS13355 0.89 +0.1 103,390 - EX31_RS13355 0.89 -1.0 103,542 + -0.3 103,705 + +0.3 103,705 + -0.5 103,705 + -0.9 103,706 - EX31_RS13365 0.10 -2.6 103,722 + EX31_RS13365 0.13 +0.3 103,722 + EX31_RS13365 0.13 -0.1 103,723 - EX31_RS13365 0.14 -0.1 103,744 + EX31_RS13365 0.18 -0.9 103,745 - EX31_RS13365 0.18 -0.8 103,746 + EX31_RS13365 0.18 +1.4 103,746 + EX31_RS13365 0.18 +0.1 103,746 + EX31_RS13365 0.18 -1.7 103,746 + EX31_RS13365 0.18 -1.1 103,746 + EX31_RS13365 0.18 -0.8 103,752 + EX31_RS13365 0.20 -0.2 103,753 - EX31_RS13365 0.20 +1.3 103,773 + EX31_RS13365 0.24 +1.1 103,774 - EX31_RS13365 0.24 +0.7 103,779 + EX31_RS13365 0.25 -0.2 103,779 + EX31_RS13365 0.25 -0.5 103,786 - EX31_RS13365 0.27 -0.4 103,821 + EX31_RS13365 0.34 -0.3 103,872 + EX31_RS13365 0.45 -1.6 103,872 + EX31_RS13365 0.45 +0.2 103,917 + EX31_RS13365 0.54 +0.3 104,010 + EX31_RS13365 0.73 -0.7 104,011 - EX31_RS13365 0.74 +0.5 104,047 + EX31_RS13365 0.81 +0.0 104,052 + EX31_RS13365 0.82 +0.5 104,072 - EX31_RS13365 0.86 -0.8 104,081 + EX31_RS13365 0.88 -0.7 104,081 + EX31_RS13365 0.88 -0.8 104,092 + +1.0 104,098 + +0.1 104,125 + +0.1 104,161 + -1.0 104,161 + +1.0 104,161 + -0.4 104,161 + -1.3 104,161 + -0.6 104,161 + -0.2 104,162 - +0.1 104,162 - -0.2 104,162 - +1.4 104,166 + +1.1 104,206 + +0.4 104,206 + +0.2 104,206 + -0.9 104,207 - -0.5 104,207 - +0.9 104,207 - +0.6 104,260 + -0.8 104,260 + -1.3 104,260 + -0.4 104,260 + -0.0 104,261 - -0.7 104,261 - +0.1 104,261 - -1.8 104,261 - -0.6 104,281 + -0.2 104,296 + +1.3 104,296 + -0.8 104,296 + +1.1 104,297 - -0.3 104,297 - -0.2 104,297 - -0.5 104,297 - -0.4 104,300 + -0.1 104,300 + +0.2 104,301 - +0.2 104,455 + EX31_RS13370 0.11 +0.4 104,464 + EX31_RS13370 0.12 +0.1 104,464 + EX31_RS13370 0.12 +0.1 104,464 + EX31_RS13370 0.12 -1.2 104,464 + EX31_RS13370 0.12 +0.8 104,464 + EX31_RS13370 0.12 +0.2 104,464 + EX31_RS13370 0.12 +0.7 104,465 - EX31_RS13370 0.12 -1.0 104,465 - EX31_RS13370 0.12 -0.6 104,552 - EX31_RS13370 0.18 -1.2 104,614 + EX31_RS13370 0.22 -1.3 104,614 + EX31_RS13370 0.22 -0.5 104,614 + EX31_RS13370 0.22 +1.7 104,614 + EX31_RS13370 0.22 +0.4 104,615 - EX31_RS13370 0.22 +1.1 104,615 - EX31_RS13370 0.22 -0.6 104,615 - EX31_RS13370 0.22 +0.8 104,665 - EX31_RS13370 0.26 +0.4 104,724 - EX31_RS13370 0.30 +1.0 104,761 - EX31_RS13370 0.32 +1.4 104,761 - EX31_RS13370 0.32 +0.8 104,761 - EX31_RS13370 0.32 -0.9 104,761 - EX31_RS13370 0.32 -0.4 104,779 + EX31_RS13370 0.33 -0.1 104,779 + EX31_RS13370 0.33 -0.5 104,779 + EX31_RS13370 0.33 -0.6 104,779 + EX31_RS13370 0.33 -0.3 104,779 + EX31_RS13370 0.33 -0.5 104,780 - EX31_RS13370 0.33 +0.6 104,780 - EX31_RS13370 0.33 -0.2 104,780 - EX31_RS13370 0.33 -0.2 104,780 - EX31_RS13370 0.33 +0.2 104,907 + EX31_RS13370 0.42 +0.0 104,908 - EX31_RS13370 0.42 -0.6 104,908 - EX31_RS13370 0.42 +0.6 104,956 - EX31_RS13370 0.46 -0.1 105,062 + EX31_RS13370 0.53 -0.2 105,063 - EX31_RS13370 0.53 -0.7 105,063 - EX31_RS13370 0.53 -0.0 105,077 - EX31_RS13370 0.54 -0.1 105,077 - EX31_RS13370 0.54 +0.4 105,077 - EX31_RS13370 0.54 -0.4 105,109 + EX31_RS13370 0.56 +1.1 105,110 - EX31_RS13370 0.56 -0.3 105,119 + EX31_RS13370 0.57 -0.4 105,120 - EX31_RS13370 0.57 +0.7 105,120 - EX31_RS13370 0.57 +0.4 105,120 - EX31_RS13370 0.57 -0.7 105,120 - EX31_RS13370 0.57 +0.4 105,128 + EX31_RS13370 0.57 -0.0 105,128 + EX31_RS13370 0.57 -0.4 105,128 + EX31_RS13370 0.57 +0.1 105,128 + EX31_RS13370 0.57 -0.2 105,128 + EX31_RS13370 0.57 -0.5 105,129 - EX31_RS13370 0.58 -0.3 105,130 + EX31_RS13370 0.58 +2.0 105,130 + EX31_RS13370 0.58 +0.6 105,130 + EX31_RS13370 0.58 -0.3 105,130 + EX31_RS13370 0.58 -0.5 105,131 - EX31_RS13370 0.58 -0.4 105,131 - EX31_RS13370 0.58 +1.8 105,131 - EX31_RS13370 0.58 -0.7 105,131 - EX31_RS13370 0.58 +0.3 105,131 - EX31_RS13370 0.58 -0.3 105,131 - EX31_RS13370 0.58 +0.7
Or see this region's nucleotide sequence